Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.....................................................................
/home/mcc/execution
total 348K
-rw-r--r-- 1 mcc users 4.4K May 30 21:45 CTLCardinality.txt
-rw-r--r-- 1 mcc users 22K May 30 21:45 CTLCardinality.xml
-rw-r--r-- 1 mcc users 6.8K May 29 15:49 CTLFireability.txt
-rw-r--r-- 1 mcc users 23K May 29 15:49 CTLFireability.xml
-rw-r--r-- 1 mcc users 2.8K May 28 09:52 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 28 09:52 LTLCardinality.xml
-rw-r--r-- 1 mcc users 3.4K May 28 08:07 LTLFireability.txt
-rw-r--r-- 1 mcc users 11K May 28 08:07 LTLFireability.xml
-rw-r--r-- 1 mcc users 1 May 24 11:17 NewModel
-rw-r--r-- 1 mcc users 4.3K May 28 06:38 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 28 06:38 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 106 May 26 06:29 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 344 May 26 06:29 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 4.7K May 27 04:07 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 14K May 27 04:07 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 28 07:31 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 28 07:31 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 24 11:17 equiv_col
-rw-r--r-- 1 mcc users 5 May 24 11:17 instance
-rw-r--r-- 1 mcc users 6 May 24 11:17 iscolored
-rw-r--r-- 1 mcc users 166K May 24 11:17 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstools
Input is MAPKbis-PT-5320, examination is LTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r284-csrt-152749174900302
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPKbis-PT-5320-LTLCardinality-00
FORMULA_NAME MAPKbis-PT-5320-LTLCardinality-01
FORMULA_NAME MAPKbis-PT-5320-LTLCardinality-02
FORMULA_NAME MAPKbis-PT-5320-LTLCardinality-03
FORMULA_NAME MAPKbis-PT-5320-LTLCardinality-04
FORMULA_NAME MAPKbis-PT-5320-LTLCardinality-05
FORMULA_NAME MAPKbis-PT-5320-LTLCardinality-06
FORMULA_NAME MAPKbis-PT-5320-LTLCardinality-07
FORMULA_NAME MAPKbis-PT-5320-LTLCardinality-08
FORMULA_NAME MAPKbis-PT-5320-LTLCardinality-09
FORMULA_NAME MAPKbis-PT-5320-LTLCardinality-10
FORMULA_NAME MAPKbis-PT-5320-LTLCardinality-11
FORMULA_NAME MAPKbis-PT-5320-LTLCardinality-12
FORMULA_NAME MAPKbis-PT-5320-LTLCardinality-13
FORMULA_NAME MAPKbis-PT-5320-LTLCardinality-14
FORMULA_NAME MAPKbis-PT-5320-LTLCardinality-15

=== Now, execution of the tool begins

BK_START 1527926829336

Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLCardinality.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLCardinality.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLCardinality.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLCardinality.ltl -c -stutter-deadlock
Read 16 LTL properties
Checking formula 0 : !((F(F(X(F("(ERK_equals_0<=GADD45_equals_1)"))))))
Formula 0 simplified : !FXF"(ERK_equals_0<=GADD45_equals_1)"
Reverse transition relation is NOT exact ! Due to transitions AP1_equals_1_to_AP1_equals_0_when_ATF2_equals_0_and_FOS_equals_0, AP1_equals_1_to_AP1_equals_0_when_JUN_equals_0, ATF2_equals_1_to_ATF2_equals_0_when_JNK_equals_0_and_p38_equals_0, ATM_equals_0_to_ATM_equals_1_when_DNA_damage_equals_1, Apoptosis_equals_1_to_Apoptosis_equals_0_when_FOXO3_equals_0, Apoptosis_equals_1_to_Apoptosis_equals_0_when_p53_equals_0, CREB_equals_1_to_CREB_equals_0_when_MSK_equals_0, DUSP1_equals_1_to_DUSP1_equals_0_when_CREB_equals_0, ELK1_equals_1_to_ELK1_equals_0_when_ERK_equals_0_and_JNK_equals_0_and_p38_equals_0, FOXO3_equals_1_to_FOXO3_equals_0_when_JNK_equals_0, GADD45_equals_1_to_GADD45_equals_0_when_SMAD_equals_0_and_p53_equals_0, Growth_Arrest_equals_1_to_Growth_Arrest_equals_0_when_p21_equals_0, JNK_equals_1_to_JNK_equals_0_when_DUSP1_equals_0_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAK1_equals_0_and_TAOK_equals_0, JUN_equals_1_to_JUN_equals_0_when_JNK_equals_0, MAX_equals_1_to_MAX_equals_0_when_p38_equals_0, MDM2_equals_1_to_MDM2_equals_0_when_AKT_equals_0_and_p53_equals_0, MSK_equals_1_to_MSK_equals_0_when_ERK_equals_0_and_p38_equals_0, MTK1_equals_0_to_MTK1_equals_1_when_GADD45_equals_1, MTK1_equals_1_to_MTK1_equals_0_when_GADD45_equals_0, MYC_equals_1_to_MYC_equals_0_when_AKT_equals_0_and_MAX_equals_0, MYC_equals_1_to_MYC_equals_0_when_MSK_equals_0, PPP2CA_equals_1_to_PPP2CA_equals_0_when_p38_equals_0, PTEN_equals_1_to_PTEN_equals_0_when_p53_equals_0, TAOK_equals_0_to_TAOK_equals_1_when_ATM_equals_1, p14_equals_1_to_p14_equals_0_when_MYC_equals_0, p21_equals_1_to_p21_equals_0_when_p53_equals_0, p38_equals_1_to_p38_equals_0_when_DUSP1_equals_0_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAK1_equals_0_and_TAOK_equals_0, p38_equals_1_to_p38_equals_0_when_DUSP1_equals_1_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAK1_equals_0, p38_equals_1_to_p38_equals_0_when_DUSP1_equals_1_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAOK_equals_0, p53_equals_0_to_p53_equals_1_when_ATM_equals_1_and_MDM2_equals_0, p53_equals_0_to_p53_equals_1_when_ATM_equals_1_and_p38_equals_1, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :106/32/31/169
Computing Next relation with stutter on 1 deadlock states
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.
Normalized transition count is 95
// Phase 1: matrix 95 rows 98 cols
invariant :EGFR_equals_0 + EGFR_equals_1 = 1
invariant :GAB1_equals_0 + GAB1_equals_1 = 1
invariant :MYC_equals_0 + MYC_equals_1 = 1
invariant :MEK1_2_equals_0 + MEK1_2_equals_1 = 1
invariant :RSK_equals_0 + RSK_equals_1 = 1
invariant :FRS2_equals_0 + FRS2_equals_1 = 1
invariant :Growth_Arrest_equals_0 + Growth_Arrest_equals_1 = 1
invariant :JNK_equals_0 + JNK_equals_1 = 1
invariant :SPRY_equals_0 + SPRY_equals_1 = 1
invariant :p38_equals_0 + p38_equals_1 = 1
invariant :FGFR3_equals_0 + FGFR3_equals_1 = 1
invariant :MSK_equals_0 + MSK_equals_1 = 1
invariant :RAS_equals_0 + RAS_equals_1 = 1
invariant :MAP3K1_3_equals_0 + MAP3K1_3_equals_1 = 1
invariant :CREB_equals_0 + CREB_equals_1 = 1
invariant :p14_equals_0 + p14_equals_1 = 1
invariant :TGFBR_equals_0 + TGFBR_equals_1 = 1
invariant :PTEN_equals_0 + PTEN_equals_1 = 1
invariant :MTK1_equals_0 + MTK1_equals_1 = 1
invariant :PLCG_equals_0 + PLCG_equals_1 = 1
invariant :ELK1_equals_0 + ELK1_equals_1 = 1
invariant :PI3K_equals_0 + PI3K_equals_1 = 1
invariant :SMAD_equals_0 + SMAD_equals_1 = 1
invariant :RAF_equals_0 + RAF_equals_1 = 1
invariant :AKT_0 + AKT_equals_1 = 1
invariant :ATF2_equals_0 + ATF2_equals_1 = 1
invariant :TAK1_equals_0 + TAK1_equals_1 = 1
invariant :GADD45_equals_0 + GADD45_equals_1 = 1
invariant :GRB2_equals_0 + GRB2_equals_1 = 1
invariant :PPP2CA_equals_0 + PPP2CA_equals_1 = 1
invariant :FOXO3_equals_0 + FOXO3_equals_1 = 1
invariant :Apoptosis_equals_0 + Apoptosis_equals_1 = 1
invariant :DUSP1_equals_0 + DUSP1_equals_1 = 1
invariant :PKC_equals_0 + PKC_equals_1 = 1
invariant :FOS_equals_0 + FOS_equals_1 = 1
invariant :Proliferation_equals_0 + Proliferation_equals_1 = 1
invariant :JUN_equals_0 + JUN_equals_1 = 1
invariant :p53_equals_0 + p53_equals_1 = 1
invariant :p70_equals_0 + p70_equals_1 = 1
invariant :PDK1_equals_0 + PDK1_equals_1 = 1
invariant :p21_equals_0 + p21_equals_1 = 1
invariant :AP1_equals_0 + AP1_equals_1 = 1
invariant :SOS_equals_0 + SOS_equals_1 = 1
invariant :ATM_equals_0 + ATM_equals_1 = 1
invariant :ERK_equals_0 + ERK_equals_1 = 1
invariant :MAX_equals_0 + MAX_equals_1 = 1
invariant :TAOK_equals_0 + TAOK_equals_1 = 1
invariant :MDM2_equals_0 + MDM2_equals_1 = 1
invariant :BCL2_equals_0 + BCL2_equals_1 = 1
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
128 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,1.32021,51452,1,0,252,150928,258,156,3245,209757,468
an accepting run exists (use option '-e' to print it)
Formula 0 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLCardinality-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 1 : !((G(F(("(GAB1_equals_1<=SPRY_equals_0)")U("(SPRY_equals_0<=1)")))))
Formula 1 simplified : !GF("(GAB1_equals_1<=SPRY_equals_0)" U "(SPRY_equals_0<=1)")
Computing Next relation with stutter on 1 deadlock states
2 unique states visited
0 strongly connected components in search stack
2 transitions explored
2 items max in DFS search stack
8 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,1.40203,54032,1,0,253,160996,265,160,3389,220637,486
no accepting run found
Formula 1 is TRUE no accepting run found.
FORMULA MAPKbis-PT-5320-LTLCardinality-01 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 2 : !(("(PPP2CA_equals_1<=MSK_equals_1)"))
Formula 2 simplified : !"(PPP2CA_equals_1<=MSK_equals_1)"
Computing Next relation with stutter on 1 deadlock states
1 unique states visited
0 strongly connected components in search stack
0 transitions explored
1 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,1.40253,54296,1,0,253,160996,268,160,3393,220637,488
no accepting run found
Formula 2 is TRUE no accepting run found.
FORMULA MAPKbis-PT-5320-LTLCardinality-02 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 3 : !(("(p21_equals_0<=AKT_equals_1)"))
Formula 3 simplified : !"(p21_equals_0<=AKT_equals_1)"
Computing Next relation with stutter on 1 deadlock states
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,1.40344,54296,1,0,253,161043,273,160,3396,220691,494
an accepting run exists (use option '-e' to print it)
Formula 3 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLCardinality-03 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 4 : !(((X(F("(ERK_equals_1>=1)")))U(X(F("(p14_equals_0>=1)")))))
Formula 4 simplified : !(XF"(ERK_equals_1>=1)" U XF"(p14_equals_0>=1)")
Computing Next relation with stutter on 1 deadlock states
2 unique states visited
0 strongly connected components in search stack
1 transitions explored
2 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,1.40392,54296,1,0,253,161043,282,160,3397,220691,498
no accepting run found
Formula 4 is TRUE no accepting run found.
FORMULA MAPKbis-PT-5320-LTLCardinality-04 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 5 : !(((F(G("(EGFR_equals_0>=3)")))U(("(MAP3K1_3_equals_1>=2)")U("(JNK_equals_0>=3)"))))
Formula 5 simplified : !(FG"(EGFR_equals_0>=3)" U ("(MAP3K1_3_equals_1>=2)" U "(JNK_equals_0>=3)"))
Computing Next relation with stutter on 1 deadlock states
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
2 unique states visited
2 strongly connected components in search stack
2 transitions explored
2 items max in DFS search stack
439 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,5.80412,157696,1,0,300,603933,297,280,3406,940876,753
an accepting run exists (use option '-e' to print it)
Formula 5 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLCardinality-05 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 6 : !(("(MEK1_2_equals_0>=3)"))
Formula 6 simplified : !"(MEK1_2_equals_0>=3)"
Computing Next relation with stutter on 1 deadlock states
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,5.80461,157960,1,0,300,603933,300,280,3408,940876,755
an accepting run exists (use option '-e' to print it)
Formula 6 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLCardinality-06 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 7 : !(((F("(FOXO3_equals_1<=0)"))U(X(F("(SMAD_equals_1>=2)")))))
Formula 7 simplified : !(F"(FOXO3_equals_1<=0)" U XF"(SMAD_equals_1>=2)")
Computing Next relation with stutter on 1 deadlock states
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
2 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,5.84382,158740,1,0,300,603933,309,280,3411,941803,860
an accepting run exists (use option '-e' to print it)
Formula 7 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLCardinality-07 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 8 : !(((G(F("(MSK_equals_0<=p53_equals_1)")))U(X(G("(MSK_equals_1<=ERK_equals_1)")))))
Formula 8 simplified : !(GF"(MSK_equals_0<=p53_equals_1)" U XG"(MSK_equals_1<=ERK_equals_1)")
Computing Next relation with stutter on 1 deadlock states
Compilation finished in 3062 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 127 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, ([](<>((LTLAP13==true))))U(X([]((LTLAP14==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 82 ms.
FORMULA MAPKbis-PT-5320-LTLCardinality-08 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, (LTLAP15==true), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 59 ms.
FORMULA MAPKbis-PT-5320-LTLCardinality-09 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, (LTLAP16==true), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 82 ms.
FORMULA MAPKbis-PT-5320-LTLCardinality-10 TRUE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, [](false), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 67 ms.
FORMULA MAPKbis-PT-5320-LTLCardinality-11 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, []([]((LTLAP17==true))), --buchi-type=spotba], workingDir=/home/mcc/execution]
12 unique states visited
3 strongly connected components in search stack
16 transitions explored
6 items max in DFS search stack
237 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,8.23143,211388,1,0,690,852254,330,526,3425,1.24489e+06,1857
an accepting run exists (use option '-e' to print it)
Formula 8 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLCardinality-08 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 9 : !(("(RSK_equals_0>=3)"))
Formula 9 simplified : !"(RSK_equals_0>=3)"
Computing Next relation with stutter on 1 deadlock states
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,8.23206,211388,1,0,690,852254,333,526,3427,1.24489e+06,1859
an accepting run exists (use option '-e' to print it)
Formula 9 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLCardinality-09 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 10 : !(("(p70_equals_1<=MSK_equals_0)"))
Formula 10 simplified : !"(p70_equals_1<=MSK_equals_0)"
Computing Next relation with stutter on 1 deadlock states
1 unique states visited
0 strongly connected components in search stack
0 transitions explored
1 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,8.23248,211652,1,0,690,852254,336,526,3430,1.2449e+06,1861
no accepting run found
Formula 10 is TRUE no accepting run found.
FORMULA MAPKbis-PT-5320-LTLCardinality-10 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 11 : !((G(false)))
Formula 11 simplified : 1
Computing Next relation with stutter on 1 deadlock states
2 unique states visited
2 strongly connected components in search stack
2 transitions explored
2 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,8.23262,211652,1,0,690,852254,336,526,3430,1.2449e+06,1862
an accepting run exists (use option '-e' to print it)
Formula 11 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLCardinality-11 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 12 : !((G(G("(PKC_equals_1<=DUSP1_equals_0)"))))
Formula 12 simplified : !G"(PKC_equals_1<=DUSP1_equals_0)"
Computing Next relation with stutter on 1 deadlock states
2 unique states visited
0 strongly connected components in search stack
2 transitions explored
2 items max in DFS search stack
12 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,8.34539,214028,1,0,739,853171,342,626,3437,1.24838e+06,2119
no accepting run found
Formula 12 is TRUE no accepting run found.
FORMULA MAPKbis-PT-5320-LTLCardinality-12 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 13 : !(((("(TAOK_equals_0<=ATM_equals_0)")U("(GADD45_equals_1>=2)"))U(("(SOS_equals_0>=1)")U("(Proliferation_equals_1>=1)"))))
Formula 13 simplified : !(("(TAOK_equals_0<=ATM_equals_0)" U "(GADD45_equals_1>=2)") U ("(SOS_equals_0>=1)" U "(Proliferation_equals_1>=1)"))
Computing Next relation with stutter on 1 deadlock states
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
9 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,8.43764,216564,1,0,742,853357,381,632,3475,1.24902e+06,2247
an accepting run exists (use option '-e' to print it)
Formula 13 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLCardinality-13 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 14 : !((G(X(("(DUSP1_equals_0>=1)")U("(MYC_equals_0>=1)")))))
Formula 14 simplified : !GX("(DUSP1_equals_0>=1)" U "(MYC_equals_0>=1)")
Computing Next relation with stutter on 1 deadlock states
4 unique states visited
4 strongly connected components in search stack
5 transitions explored
4 items max in DFS search stack
2 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,8.47106,216812,1,0,748,856742,393,637,3481,1.25342e+06,2265
an accepting run exists (use option '-e' to print it)
Formula 14 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLCardinality-14 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 15 : !((X(G("(RAF_equals_1>=2)"))))
Formula 15 simplified : !XG"(RAF_equals_1>=2)"
Computing Next relation with stutter on 1 deadlock states
4 unique states visited
4 strongly connected components in search stack
4 transitions explored
4 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,8.47392,217076,1,0,748,856884,399,637,3484,1.25359e+06,2272
an accepting run exists (use option '-e' to print it)
Formula 15 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLCardinality-15 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
ITS tools runner thread asked to quit. Dying gracefully.
WARNING : LTS min runner thread was asked to interrupt. Dying gracefully.

BK_STOP 1527926843335

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Jun 02, 2018 8:07:11 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
Jun 02, 2018 8:07:11 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Jun 02, 2018 8:07:11 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 86 ms
Jun 02, 2018 8:07:11 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 106 places.
Jun 02, 2018 8:07:12 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 173 transitions.
Jun 02, 2018 8:07:12 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 42 ms
Jun 02, 2018 8:07:12 AM fr.lip6.move.gal.instantiate.DomainAnalyzer computeVariableDomains
INFO: Found a total of 8 fixed domain variables (out of 106 variables) in GAL type MAPKbis_PT_5320
Jun 02, 2018 8:07:12 AM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: Found a total of 8 constant array cells/variables (out of 106 variables) in type MAPKbis_PT_5320
Jun 02, 2018 8:07:12 AM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: DNA_damage_equals_0,DNA_damage_equals_1,EGFR_stimulus_equals_0,FGFR3_stimulus_equals_1,TGFBR_stimulus_equals_1,FGFR3_stimulus_equals_0,TGFBR_stimulus_equals_0,EGFR_stimulus_equals_1,
Jun 02, 2018 8:07:12 AM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Removed 8 constant variables :DNA_damage_equals_0=0, DNA_damage_equals_1=1, EGFR_stimulus_equals_0=1, FGFR3_stimulus_equals_1=0, TGFBR_stimulus_equals_1=0, FGFR3_stimulus_equals_0=1, TGFBR_stimulus_equals_0=1, EGFR_stimulus_equals_1=0
Jun 02, 2018 8:07:12 AM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Simplified 12 expressions due to constant valuations.
Jun 02, 2018 8:07:12 AM fr.lip6.move.gal.instantiate.Simplifier simplifyFalseTransitions
INFO: Removed 4 false transitions.
Jun 02, 2018 8:07:12 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 148 ms
Jun 02, 2018 8:07:12 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/LTLCardinality.pnml.gal : 8 ms
Jun 02, 2018 8:07:12 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSLTLTools
INFO: Time to serialize properties into /home/mcc/execution/LTLCardinality.ltl : 2 ms
Jun 02, 2018 8:07:12 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 169 transitions.
Jun 02, 2018 8:07:12 AM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver computeAndDeclareInvariants
INFO: Computed 49 place invariants in 21 ms
Jun 02, 2018 8:07:12 AM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver init
INFO: Proved 98 variables to be positive in 164 ms
Jun 02, 2018 8:07:12 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may disable matrix : 169 transitions.
Jun 02, 2018 8:07:12 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of disable matrix completed :0/169 took 0 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Jun 02, 2018 8:07:12 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete disable matrix. took 11 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Jun 02, 2018 8:07:12 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may enable matrix : 169 transitions.
Jun 02, 2018 8:07:12 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete enable matrix. took 10 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Jun 02, 2018 8:07:13 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeCoEnablingMatrix
INFO: Computing symmetric co enabling matrix : 169 transitions.
Jun 02, 2018 8:07:15 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(97/169) took 2207 ms. Total solver calls (SAT/UNSAT): 1752(731/1021)
Jun 02, 2018 8:07:16 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Finished co-enabling matrix. took 3196 ms. Total solver calls (SAT/UNSAT): 2219(907/1312)
Jun 02, 2018 8:07:16 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeDoNotAccord
INFO: Computing Do-Not-Accords matrix : 169 transitions.
Jun 02, 2018 8:07:16 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Completed DNA matrix. took 5 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Jun 02, 2018 8:07:16 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 4481ms conformant to PINS in folder :/home/mcc/execution

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPKbis-PT-5320"
export BK_EXAMINATION="LTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/MAPKbis-PT-5320.tgz
mv MAPKbis-PT-5320 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstools"
echo " Input is MAPKbis-PT-5320, examination is LTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r284-csrt-152749174900302"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;