Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...............................................................................
/home/mcc/execution
total 30M
-rw-r--r-- 1 mcc users 5.1K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 24K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.6K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.7K May 26 09:27 LTLCardinality.txt
-rw-r--r-- 1 mcc users 9.8K May 26 09:27 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.8K May 26 09:27 LTLFireability.txt
-rw-r--r-- 1 mcc users 10K May 26 09:27 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 117 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 355 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 4.9K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.9K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 4.0K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 9 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 30M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is PhaseVariation-PT-D30CS100, examination is LTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r261-csrt-152732586000190
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME PhaseVariation-PT-D30CS100-LTLFireability-00
FORMULA_NAME PhaseVariation-PT-D30CS100-LTLFireability-01
FORMULA_NAME PhaseVariation-PT-D30CS100-LTLFireability-02
FORMULA_NAME PhaseVariation-PT-D30CS100-LTLFireability-03
FORMULA_NAME PhaseVariation-PT-D30CS100-LTLFireability-04
FORMULA_NAME PhaseVariation-PT-D30CS100-LTLFireability-05
FORMULA_NAME PhaseVariation-PT-D30CS100-LTLFireability-06
FORMULA_NAME PhaseVariation-PT-D30CS100-LTLFireability-07
FORMULA_NAME PhaseVariation-PT-D30CS100-LTLFireability-08
FORMULA_NAME PhaseVariation-PT-D30CS100-LTLFireability-09
FORMULA_NAME PhaseVariation-PT-D30CS100-LTLFireability-10
FORMULA_NAME PhaseVariation-PT-D30CS100-LTLFireability-11
FORMULA_NAME PhaseVariation-PT-D30CS100-LTLFireability-12
FORMULA_NAME PhaseVariation-PT-D30CS100-LTLFireability-13
FORMULA_NAME PhaseVariation-PT-D30CS100-LTLFireability-14
FORMULA_NAME PhaseVariation-PT-D30CS100-LTLFireability-15

=== Now, execution of the tool begins

BK_START 1527506027500

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph8325005688438772210.txt, -o, /tmp/graph8325005688438772210.bin, -w, /tmp/graph8325005688438772210.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph8325005688438772210.bin, -l, -1, -v, -w, /tmp/graph8325005688438772210.weights, -q, 0, -e, 0.001], workingDir=null]
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock
Read 16 LTL properties
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution] killed by timeout after 400 SECONDS
Checking formula 0 : !((F(F(G(F("(((i0.u725.pool__9_16_>=1)&&(i21.u740.cell___8_17__A_>=1))&&(i21.u740.run_dot>=1))"))))))
Formula 0 simplified : !FGF"(((i0.u725.pool__9_16_>=1)&&(i21.u740.cell___8_17__A_>=1))&&(i21.u740.run_dot>=1))"
built 65 ordering constraints for composite.
built 1500 ordering constraints for composite.
built 1600 ordering constraints for composite.
built 1616 ordering constraints for composite.
built 1976 ordering constraints for composite.
built 952 ordering constraints for composite.
built 936 ordering constraints for composite.
built 1456 ordering constraints for composite.
built 848 ordering constraints for composite.
built 1424 ordering constraints for composite.
built 29464 ordering constraints for composite.
built 2220 ordering constraints for composite.
built 2296 ordering constraints for composite.
built 1512 ordering constraints for composite.
built 880 ordering constraints for composite.
built 980 ordering constraints for composite.
built 1036 ordering constraints for composite.
built 2236 ordering constraints for composite.
built 1392 ordering constraints for composite.
built 1464 ordering constraints for composite.
built 2020 ordering constraints for composite.
built 776 ordering constraints for composite.
built 1552 ordering constraints for composite.
sparsehash FATAL ERROR: failed to allocate 35 groups

BK_STOP 1527508220803

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 28, 2018 11:13:50 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 28, 2018 11:13:50 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 28, 2018 11:13:51 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 1215 ms
May 28, 2018 11:13:51 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 2702 places.
May 28, 2018 11:13:53 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 30977 transitions.
May 28, 2018 11:13:53 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 28, 2018 11:13:58 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 5553 ms
May 28, 2018 11:14:02 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 3458 ms
Begin: Mon May 28 11:14:08 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Mon May 28 11:14:08 2018
network size: 2702 nodes, 41778 links, 61952 weight
quality increased from -0.0978751 to 0.15585
end computation: Mon May 28 11:14:08 2018
level 1:
start computation: Mon May 28 11:14:08 2018
network size: 741 nodes, 7007 links, 61952 weight
quality increased from 0.15585 to 0.216078
end computation: Mon May 28 11:14:08 2018
level 2:
start computation: Mon May 28 11:14:08 2018
network size: 109 nodes, 851 links, 61952 weight
quality increased from 0.216078 to 0.233193
end computation: Mon May 28 11:14:08 2018
level 3:
start computation: Mon May 28 11:14:08 2018
network size: 29 nodes, 195 links, 61952 weight
quality increased from 0.233193 to 0.234057
end computation: Mon May 28 11:14:08 2018
level 4:
start computation: Mon May 28 11:14:08 2018
network size: 22 nodes, 150 links, 61952 weight
quality increased from 0.234057 to 0.234057
end computation: Mon May 28 11:14:08 2018
End: Mon May 28 11:14:08 2018
Total duration: 0 sec
0.234057
May 28, 2018 11:14:08 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 28, 2018 11:14:12 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 4030 ms
May 28, 2018 11:14:13 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 28, 2018 11:20:00 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 71511 redundant transitions.
May 28, 2018 11:20:02 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 657 ms
May 28, 2018 11:20:02 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSLTLTools
INFO: Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 15 ms
May 28, 2018 11:20:07 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 30977 transitions.
May 28, 2018 11:20:07 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (30977) to apply POR reductions. Disabling POR matrices.
May 28, 2018 11:20:11 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 9504ms conformant to PINS in folder :/home/mcc/execution
java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution] killed by timeout after 400 SECONDS
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:78)
at java.lang.Thread.run(Thread.java:748)
ITS-tools command line returned an error code 1

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="PhaseVariation-PT-D30CS100"
export BK_EXAMINATION="LTLFireability"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/PhaseVariation-PT-D30CS100.tgz
mv PhaseVariation-PT-D30CS100 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is PhaseVariation-PT-D30CS100, examination is LTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r261-csrt-152732586000190"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;