Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
........................................................................
/home/mcc/execution
total 200K
-rw-r--r-- 1 mcc users 4.2K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 24K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 15K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.9K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.5K May 26 09:26 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 26 09:26 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.7K May 26 09:26 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.1K May 26 09:26 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 102 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 340 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.6K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.6K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 4 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 25K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstools
Input is MAPK-PT-320, examination is LTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r260-csrt-152732585200055
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPK-PT-320-LTLCardinality-00
FORMULA_NAME MAPK-PT-320-LTLCardinality-01
FORMULA_NAME MAPK-PT-320-LTLCardinality-02
FORMULA_NAME MAPK-PT-320-LTLCardinality-03
FORMULA_NAME MAPK-PT-320-LTLCardinality-04
FORMULA_NAME MAPK-PT-320-LTLCardinality-05
FORMULA_NAME MAPK-PT-320-LTLCardinality-06
FORMULA_NAME MAPK-PT-320-LTLCardinality-07
FORMULA_NAME MAPK-PT-320-LTLCardinality-08
FORMULA_NAME MAPK-PT-320-LTLCardinality-09
FORMULA_NAME MAPK-PT-320-LTLCardinality-10
FORMULA_NAME MAPK-PT-320-LTLCardinality-11
FORMULA_NAME MAPK-PT-320-LTLCardinality-12
FORMULA_NAME MAPK-PT-320-LTLCardinality-13
FORMULA_NAME MAPK-PT-320-LTLCardinality-14
FORMULA_NAME MAPK-PT-320-LTLCardinality-15

=== Now, execution of the tool begins

BK_START 1527484537448

Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLCardinality.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLCardinality.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLCardinality.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLCardinality.ltl -c -stutter-deadlock
Read 16 LTL properties
Checking formula 0 : !((F((X("(MEKPP_Phase2<=MEKP)"))U("(ERKP_Phase3>=3)"))))
Formula 0 simplified : !F(X"(MEKPP_Phase2<=MEKP)" U "(ERKP_Phase3>=3)")
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.
// Phase 1: matrix 30 rows 22 cols
invariant :-1'MEK + ERKP + -1'MEKPP + -1'Phase3 + -1'MEKP + ERKPP + -1'MEKP_Phase2 + -1'MEKPP_Phase2 + ERK + RafP + RafP_Phase1 + -1'RasGTP + Raf = 80
invariant :MEKP_RafP + RafP + MEK_RafP + RafP_Phase1 + -1'RasGTP + Raf = 240
invariant :Phase1 + RafP_Phase1 = 240
invariant :ERKPP_Phase3 + ERKP_Phase3 + Phase3 = 240
invariant :Phase2 + MEKP_Phase2 + MEKPP_Phase2 = 160
invariant :ERK_MEKPP + ERKP_MEKPP + MEK + MEKPP + MEKP + MEKP_Phase2 + MEKPP_Phase2 + -1'RafP + -1'RafP_Phase1 + RasGTP + -1'Raf = -80
invariant :Raf_RasGTP + RasGTP = 80
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Compilation finished in 681 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 50 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, <>((X((LTLAP0==true)))U((LTLAP1==true))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 49 ms.
FORMULA MAPK-PT-320-LTLCardinality-00 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, ([]((LTLAP2==true)))U([]((LTLAP3==true))), --buchi-type=spotba], workingDir=/home/mcc/execution]
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Unexpected exception when executing ltsmin :CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, ([]((LTLAP2==true)))U([]((LTLAP3==true))), --buchi-type=spotba], workingDir=/home/mcc/execution]
255
sparsehash FATAL ERROR: failed to allocate 44 groups

BK_STOP 1527485706769

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 28, 2018 5:15:39 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
May 28, 2018 5:15:39 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 28, 2018 5:15:39 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 36 ms
May 28, 2018 5:15:39 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 22 places.
May 28, 2018 5:15:39 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 30 transitions.
May 28, 2018 5:15:39 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 6 ms
May 28, 2018 5:15:39 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 56 ms
May 28, 2018 5:15:39 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/LTLCardinality.pnml.gal : 2 ms
May 28, 2018 5:15:39 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSLTLTools
INFO: Time to serialize properties into /home/mcc/execution/LTLCardinality.ltl : 2 ms
May 28, 2018 5:15:40 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 30 transitions.
May 28, 2018 5:15:40 AM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver computeAndDeclareInvariants
INFO: Computed 7 place invariants in 9 ms
May 28, 2018 5:15:40 AM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver init
INFO: Proved 22 variables to be positive in 62 ms
May 28, 2018 5:15:40 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may disable matrix : 30 transitions.
May 28, 2018 5:15:40 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of disable matrix completed :0/30 took 0 ms. Total solver calls (SAT/UNSAT): 0(0/0)
May 28, 2018 5:15:40 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete disable matrix. took 1 ms. Total solver calls (SAT/UNSAT): 0(0/0)
May 28, 2018 5:15:40 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may enable matrix : 30 transitions.
May 28, 2018 5:15:40 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete enable matrix. took 0 ms. Total solver calls (SAT/UNSAT): 0(0/0)
May 28, 2018 5:15:42 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeCoEnablingMatrix
INFO: Computing symmetric co enabling matrix : 30 transitions.
May 28, 2018 5:15:43 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(22/30) took 1423 ms. Total solver calls (SAT/UNSAT): 218(218/0)
May 28, 2018 5:15:44 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Finished co-enabling matrix. took 1940 ms. Total solver calls (SAT/UNSAT): 229(229/0)
May 28, 2018 5:15:44 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeDoNotAccord
INFO: Computing Do-Not-Accords matrix : 30 transitions.
May 28, 2018 5:15:44 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Completed DNA matrix. took 356 ms. Total solver calls (SAT/UNSAT): 112(0/112)
May 28, 2018 5:15:44 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 4303ms conformant to PINS in folder :/home/mcc/execution
pins2lts-mc, 0.000: Registering PINS so language module
pins2lts-mc, 0.000: Loading model from ./gal.so
pins2lts-mc, 0.000: library has no initializer
pins2lts-mc, 0.000: loading model GAL
pins2lts-mc, 0.000: completed loading model GAL
pins2lts-mc, 0.000: Initializing POR dependencies: labels 55, guards 30
pins2lts-mc, 0.000: LTL layer: formula: ([]((LTLAP2==true)))U([]((LTLAP3==true)))
pins2lts-mc, 0.000: "([]((LTLAP2==true)))U([]((LTLAP3==true)))" is not a file, parsing as formula...
pins2lts-mc, 0.000: Using Spin LTL semantics
pins2lts-mc, 0.010: buchi has 5 states
pins2lts-mc, 0.010: Forcing use of the an ignoring proviso (cndfs)
pins2lts-mc, 0.012: There are 56 state labels and 1 edge labels
pins2lts-mc, 0.012: State length is 23, there are 45 groups
pins2lts-mc, 0.012: Running cndfs using 1 core (sequential)
pins2lts-mc, 0.012: Using a tree table with 2^27 elements
pins2lts-mc, 0.012: Successor permutation: dynamic
pins2lts-mc, 0.012: Visible groups: 0 / 45, labels: 2 / 56
pins2lts-mc, 0.012: POR cycle proviso: cndfs (ltl)
pins2lts-mc, 0.012: Global bits: 2, count bits: 2, local bits: 0
pins2lts-mc, 0.042: [Blue] 1000 levels 1000 states 1248 transitions
pins2lts-mc, 0.075: [Blue] 2000 levels 2000 states 2266 transitions
pins2lts-mc, 0.137: [Blue] 4000 levels 4000 states 4731 transitions
pins2lts-mc, 0.246: [Blue] 8000 levels 8000 states 10590 transitions
pins2lts-mc, 0.651: [Blue] 16000 levels 16000 states 18686 transitions
pins2lts-mc, 1.314: [Blue] 32000 levels 32000 states 34886 transitions
pins2lts-mc, 2.470: [Blue] 64000 levels 64000 states 67833 transitions
pins2lts-mc, 4.537: [Blue] 128000 levels 128000 states 134923 transitions
pins2lts-mc, 8.538: [Blue] 256000 levels 256000 states 266823 transitions
pins2lts-mc, 16.442: [Blue] 512000 levels 512000 states 529459 transitions
pins2lts-mc, 30.701: [Blue] 1024000 levels 1024000 states 1055315 transitions
pins2lts-mc, 59.064: [Blue] 2048000 levels 2048000 states 2107023 transitions
pins2lts-mc, 116.289: [Blue] 4096000 levels 4096000 states 4210439 transitions
pins2lts-mc, 202.629: Error: tree leafs table full! Change -s/--ratio.
pins2lts-mc, 202.630:
pins2lts-mc, 202.630: Explored 6799584 states 6986803 transitions, fanout: 1.028
pins2lts-mc, 202.630: Total exploration time 202.620 sec (202.620 sec minimum, 202.620 sec on average)
pins2lts-mc, 202.630: States per second: 33558, Transitions per second: 34482
pins2lts-mc, 202.630:
pins2lts-mc, 202.630: State space has 33211643 states, 0 are accepting
pins2lts-mc, 202.630: cndfs_1 (permutation: dynamic) stats:
pins2lts-mc, 202.630: blue states: 6799584 (20.47%), transitions: 0 (per worker)
pins2lts-mc, 202.630: red states: 0 (0.00%), bogus: 0 (0.00%), transitions: 0, waits: 0 (0.00 sec)
pins2lts-mc, 202.630: all-red states: 0 (0.00%), bogus 0 (0.00%)
pins2lts-mc, 202.630:
pins2lts-mc, 202.630: Total memory used for local state coloring: 103.8MB
pins2lts-mc, 202.630:
pins2lts-mc, 202.630: Queue width: 8B, total height: 6799584, memory: 51.88MB
pins2lts-mc, 202.630: Tree memory: 509.4MB, 16.1 B/state, compr.: 17.1%
pins2lts-mc, 202.630: Tree fill ratio (roots/leafs): 24.0%/99.0%
pins2lts-mc, 202.630: Stored 30 string chucks using 0MB
pins2lts-mc, 202.630: Total memory used for chunk indexing: 0MB
pins2lts-mc, 202.630: Est. total memory use: 561.3MB (~1075.9MB paged-in)
java.lang.RuntimeException: Unexpected exception when executing ltsmin :CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, ([]((LTLAP2==true)))U([]((LTLAP3==true))), --buchi-type=spotba], workingDir=/home/mcc/execution]
255
at fr.lip6.move.gal.application.LTSminRunner.checkProperty(LTSminRunner.java:167)
at fr.lip6.move.gal.application.LTSminRunner.access$9(LTSminRunner.java:122)
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:91)
at java.lang.Thread.run(Thread.java:748)
ITS-tools command line returned an error code 1

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPK-PT-320"
export BK_EXAMINATION="LTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/MAPK-PT-320.tgz
mv MAPK-PT-320 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstools"
echo " Input is MAPK-PT-320, examination is LTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r260-csrt-152732585200055"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;