Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..................
/home/mcc/execution
total 3.2M
-rw-r--r-- 1 mcc users 3.7K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.9K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 15K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.8K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.6K May 26 09:26 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 26 09:26 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K May 26 09:26 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.9K May 26 09:26 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 113 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 351 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.1K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 15K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 8 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 3.0M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstools
Input is Diffusion2D-PT-D30N150, examination is LTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r236-blw3-152732477100073
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D30N150-LTLCardinality-00
FORMULA_NAME Diffusion2D-PT-D30N150-LTLCardinality-01
FORMULA_NAME Diffusion2D-PT-D30N150-LTLCardinality-02
FORMULA_NAME Diffusion2D-PT-D30N150-LTLCardinality-03
FORMULA_NAME Diffusion2D-PT-D30N150-LTLCardinality-04
FORMULA_NAME Diffusion2D-PT-D30N150-LTLCardinality-05
FORMULA_NAME Diffusion2D-PT-D30N150-LTLCardinality-06
FORMULA_NAME Diffusion2D-PT-D30N150-LTLCardinality-07
FORMULA_NAME Diffusion2D-PT-D30N150-LTLCardinality-08
FORMULA_NAME Diffusion2D-PT-D30N150-LTLCardinality-09
FORMULA_NAME Diffusion2D-PT-D30N150-LTLCardinality-10
FORMULA_NAME Diffusion2D-PT-D30N150-LTLCardinality-11
FORMULA_NAME Diffusion2D-PT-D30N150-LTLCardinality-12
FORMULA_NAME Diffusion2D-PT-D30N150-LTLCardinality-13
FORMULA_NAME Diffusion2D-PT-D30N150-LTLCardinality-14
FORMULA_NAME Diffusion2D-PT-D30N150-LTLCardinality-15

=== Now, execution of the tool begins

BK_START 1527955182886

Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLCardinality.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLCardinality.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLCardinality.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLCardinality.ltl -c -stutter-deadlock
Read 16 LTL properties
Checking formula 0 : !((F(F(("(cAMP__30_5_>=3)")U("(cAMP__6_13_>=1)")))))
Formula 0 simplified : !F("(cAMP__30_5_>=3)" U "(cAMP__6_13_>=1)")
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Compilation finished in 63906 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 103 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, <>(<>(((LTLAP0==true))U((LTLAP1==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
WARNING : LTSmin timed out (>225 s) on command CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, <>(<>(((LTLAP0==true))U((LTLAP1==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, (LTLAP2==true), --buchi-type=spotba], workingDir=/home/mcc/execution]
WARNING : LTSmin timed out (>225 s) on command CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, (LTLAP2==true), --buchi-type=spotba], workingDir=/home/mcc/execution]
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, [](<>((LTLAP3==true))), --buchi-type=spotba], workingDir=/home/mcc/execution]
WARNING : LTSmin timed out (>225 s) on command CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, [](<>((LTLAP3==true))), --buchi-type=spotba], workingDir=/home/mcc/execution]
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, <>((X((LTLAP4==true)))U([]((LTLAP5==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 221 ms.
FORMULA Diffusion2D-PT-D30N150-LTLCardinality-03 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, X(<>([](X((LTLAP6==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 210 ms.
FORMULA Diffusion2D-PT-D30N150-LTLCardinality-04 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, X(X(((LTLAP7==true))U((LTLAP8==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 346 ms.
FORMULA Diffusion2D-PT-D30N150-LTLCardinality-05 TRUE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, (LTLAP9==true), --buchi-type=spotba], workingDir=/home/mcc/execution]
WARNING : LTSmin timed out (>225 s) on command CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, (LTLAP9==true), --buchi-type=spotba], workingDir=/home/mcc/execution]
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, []((LTLAP10==true)), --buchi-type=spotba], workingDir=/home/mcc/execution]
WARNING : LTSmin timed out (>225 s) on command CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, []((LTLAP10==true)), --buchi-type=spotba], workingDir=/home/mcc/execution]
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, (LTLAP11==true), --buchi-type=spotba], workingDir=/home/mcc/execution]
WARNING : LTSmin timed out (>225 s) on command CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, (LTLAP11==true), --buchi-type=spotba], workingDir=/home/mcc/execution]
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, X((X((LTLAP12==true)))U([]((LTLAP13==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
WARNING : LTSmin timed out (>225 s) on command CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, X((X((LTLAP12==true)))U([]((LTLAP13==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, X((X((LTLAP14==true)))U((LTLAP15==true))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 235 ms.
FORMULA Diffusion2D-PT-D30N150-LTLCardinality-10 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, []((LTLAP16==true)), --buchi-type=spotba], workingDir=/home/mcc/execution]
WARNING : LTSmin timed out (>225 s) on command CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, []((LTLAP16==true)), --buchi-type=spotba], workingDir=/home/mcc/execution]
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, (X(<>((LTLAP17==true))))U((LTLAP18==true)), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 211 ms.
FORMULA Diffusion2D-PT-D30N150-LTLCardinality-12 TRUE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, ((LTLAP19==true))U((LTLAP20==true)), --buchi-type=spotba], workingDir=/home/mcc/execution]
WARNING : LTSmin timed out (>225 s) on command CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, ((LTLAP19==true))U((LTLAP20==true)), --buchi-type=spotba], workingDir=/home/mcc/execution]
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, <>([]([]((LTLAP21==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
WARNING : LTSmin timed out (>225 s) on command CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, <>([]([]((LTLAP21==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, (LTLAP22==true), --buchi-type=spotba], workingDir=/home/mcc/execution]
WARNING : LTSmin timed out (>225 s) on command CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, (LTLAP22==true), --buchi-type=spotba], workingDir=/home/mcc/execution]
Retrying LTSmin with larger timeout 1800 s
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, <>(<>(((LTLAP0==true))U((LTLAP1==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
LTSmin run took 629745 ms.
FORMULA Diffusion2D-PT-D30N150-LTLCardinality-00 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, (LTLAP2==true), --buchi-type=spotba], workingDir=/home/mcc/execution]

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Jun 02, 2018 3:59:44 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
Jun 02, 2018 3:59:44 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Jun 02, 2018 3:59:44 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 317 ms
Jun 02, 2018 3:59:44 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 900 places.
Jun 02, 2018 3:59:45 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 6844 transitions.
Jun 02, 2018 3:59:45 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 761 ms
Jun 02, 2018 3:59:46 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/LTLCardinality.pnml.gal : 69 ms
Jun 02, 2018 3:59:46 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSLTLTools
INFO: Time to serialize properties into /home/mcc/execution/LTLCardinality.ltl : 1 ms
Jun 02, 2018 3:59:46 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 6844 transitions.
Jun 02, 2018 3:59:46 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (6844) to apply POR reductions. Disabling POR matrices.
Jun 02, 2018 3:59:47 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 902ms conformant to PINS in folder :/home/mcc/execution
ITS-tools command line returned an error code 134

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D30N150"
export BK_EXAMINATION="LTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D30N150.tgz
mv Diffusion2D-PT-D30N150 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstools"
echo " Input is Diffusion2D-PT-D30N150, examination is LTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r236-blw3-152732477100073"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;