fond
Model Checking Contest 2018
8th edition, Bratislava, Slovakia, June 26, 2018
Execution of r201-qhx1-152732197900002
Last Updated
June 26, 2018

About the Execution of ITS-Tools.L for Angiogenesis-PT-01

Execution Summary
Max Memory
Used (MB)
Time wait (ms) CPU Usage (ms) I/O Wait (ms) Computed Result Execution
Status
15755.890 17996.00 13529.00 2227.20 FFFFFFFFFFFFFFFF normal

Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..........................
/home/mcc/execution
total 208K
-rw-r--r-- 1 mcc users 4.2K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.7K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:49 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:49 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.5K May 26 09:26 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 26 09:26 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K May 26 09:26 LTLFireability.txt
-rw-r--r-- 1 mcc users 7.9K May 26 09:26 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.7K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 23K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 109 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 347 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 13K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:49 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:49 instance
-rw-r--r-- 1 mcc users 6 May 15 18:49 iscolored
-rw-r--r-- 1 mcc users 33K May 15 18:49 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is Angiogenesis-PT-01, examination is LTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r201-qhx1-152732197900002
=====================================================================


--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-00
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-01
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-02
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-03
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-04
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-05
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-06
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-07
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-08
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-09
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-10
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-11
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-12
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-13
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-14
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-15

=== Now, execution of the tool begins

BK_START 1527414167386

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph8937678954799901380.txt, -o, /tmp/graph8937678954799901380.bin, -w, /tmp/graph8937678954799901380.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph8937678954799901380.bin, -l, -1, -v, -w, /tmp/graph8937678954799901380.weights, -q, 0, -e, 0.001], workingDir=null]
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock
Read 16 LTL properties
Checking formula 0 : !(("((i1.u6.KdStarGStarP3kStarP3>=1)&&(i5.u12.Pip2>=1))"))
Formula 0 simplified : !"((i1.u6.KdStarGStarP3kStarP3>=1)&&(i5.u12.Pip2>=1))"
built 19 ordering constraints for composite.
built 14 ordering constraints for composite.
built 24 ordering constraints for composite.
built 14 ordering constraints for composite.
built 8 ordering constraints for composite.
built 24 ordering constraints for composite.
Reverse transition relation is NOT exact ! Due to transitions k55, i0.u2.k2, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :14/48/2/64
Computing Next relation with stutter on 4 deadlock states
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
5 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.175645,17052,1,0,1152,161,926,1654,188,384,7103
an accepting run exists (use option '-e' to print it)
Formula 0 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 1 : !((F(X(G(F(X("(i3.u10.GStarPgP3>=1)")))))))
Formula 1 simplified : !FXGFX"(i3.u10.GStarPgP3>=1)"
Computing Next relation with stutter on 4 deadlock states
4 unique states visited
4 strongly connected components in search stack
5 transitions explored
4 items max in DFS search stack
1 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.188623,17792,1,0,1214,161,967,1746,189,384,7426
an accepting run exists (use option '-e' to print it)
Formula 1 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-01 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 2 : !((F(F((X("(i3.u10.KdStarGStarPgP3>=1)"))U(X("(i3.u10.KdStarGStarPgP3>=1)"))))))
Formula 2 simplified : !FX"(i3.u10.KdStarGStarPgP3>=1)"
Computing Next relation with stutter on 4 deadlock states
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
1 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.198819,18060,1,0,1535,161,983,2129,190,384,8508
an accepting run exists (use option '-e' to print it)
Formula 2 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-02 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 3 : !((X(X("(i2.u1.DAGE>=1)"))))
Formula 3 simplified : !XX"(i2.u1.DAGE>=1)"
Computing Next relation with stutter on 4 deadlock states
5 unique states visited
5 strongly connected components in search stack
5 transitions explored
5 items max in DFS search stack
1 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.208447,18060,1,0,1583,161,988,2157,190,384,8827
an accepting run exists (use option '-e' to print it)
Formula 3 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-03 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 4 : !((X("((i0.u4.KdStarGStarP3>=1)&&(i3.u10.Pg>=1))")))
Formula 4 simplified : !X"((i0.u4.KdStarGStarP3>=1)&&(i3.u10.Pg>=1))"
Computing Next relation with stutter on 4 deadlock states
4 unique states visited
4 strongly connected components in search stack
4 transitions explored
4 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.211234,18060,1,0,1583,161,996,2157,190,384,8863
an accepting run exists (use option '-e' to print it)
Formula 4 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-04 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 5 : !(("((i5.u0.Pip3>=1)&&(i5.u0.Akt>=1))"))
Formula 5 simplified : !"((i5.u0.Pip3>=1)&&(i5.u0.Akt>=1))"
Computing Next relation with stutter on 4 deadlock states
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.21195,18060,1,0,1583,161,1010,2157,194,384,8870
an accepting run exists (use option '-e' to print it)
Formula 5 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-05 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 6 : !((F(G((G("((i2.u7.KdStarGStarPgStar>=1)&&(i5.u12.Pip2>=1))"))U(X("((i1.u3.GStarP3kP3>=1)&&(i0.u4.KdStar>=1))"))))))
Formula 6 simplified : !FG(G"((i2.u7.KdStarGStarPgStar>=1)&&(i5.u12.Pip2>=1))" U X"((i1.u3.GStarP3kP3>=1)&&(i0.u4.KdStar>=1))")
Computing Next relation with stutter on 4 deadlock states
3 unique states visited
2 strongly connected components in search stack
4 transitions explored
3 items max in DFS search stack
1 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.245735,19796,1,0,2255,164,1062,3144,194,416,11577
an accepting run exists (use option '-e' to print it)
Formula 6 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-06 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 7 : !(("((u5.KdStarGStarP3kStar>=1)&&(i5.u12.Pip2>=1))"))
Formula 7 simplified : !"((u5.KdStarGStarP3kStar>=1)&&(i5.u12.Pip2>=1))"
Computing Next relation with stutter on 4 deadlock states
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.249101,19796,1,0,2255,164,1067,3144,194,416,11583
an accepting run exists (use option '-e' to print it)
Formula 7 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-07 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 8 : !((G((X(G("(u9.KdStarPgStarP2>=1)")))U("(u9.KdStarPgStarP2>=1)"))))
Formula 8 simplified : !G(XG"(u9.KdStarPgStarP2>=1)" U "(u9.KdStarPgStarP2>=1)")
Computing Next relation with stutter on 4 deadlock states
4 unique states visited
4 strongly connected components in search stack
4 transitions explored
4 items max in DFS search stack
1 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.25232,19796,1,0,2255,164,1079,3144,194,416,11599
an accepting run exists (use option '-e' to print it)
Formula 8 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-08 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 9 : !((X(F(X(("(u9.KdStarPg>=1)")U("(i5.u12.PtP2>=1)"))))))
Formula 9 simplified : !XFX("(u9.KdStarPg>=1)" U "(i5.u12.PtP2>=1)")
Computing Next relation with stutter on 4 deadlock states
4 unique states visited
4 strongly connected components in search stack
4 transitions explored
4 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.258044,19796,1,0,2465,164,1099,3413,194,420,12091
an accepting run exists (use option '-e' to print it)
Formula 9 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-09 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 10 : !((F(X(G(X(G("(i1.u6.KdStarGStarP3kStarP3P2>=1)")))))))
Formula 10 simplified : !FXGXG"(i1.u6.KdStarGStarP3kStarP3P2>=1)"
Computing Next relation with stutter on 4 deadlock states
4 unique states visited
3 strongly connected components in search stack
5 transitions explored
4 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.262928,20008,1,0,2465,164,1102,3413,194,420,12137
an accepting run exists (use option '-e' to print it)
Formula 10 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-10 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 11 : !((X((G("((i0.u2.GP3>=1)&&(i0.u4.KdStar>=1))"))U(G("(i2.u7.KdStarGStarPg>=1)")))))
Formula 11 simplified : !X(G"((i0.u2.GP3>=1)&&(i0.u4.KdStar>=1))" U G"(i2.u7.KdStarGStarPg>=1)")
Computing Next relation with stutter on 4 deadlock states
4 unique states visited
4 strongly connected components in search stack
4 transitions explored
4 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.269491,20156,1,0,2465,164,1139,3413,194,420,12216
an accepting run exists (use option '-e' to print it)
Formula 11 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-11 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 12 : !((G("((i2.u7.KdStarGStarPgStar>=1)&&(i5.u12.Pip2>=1))")))
Formula 12 simplified : !G"((i2.u7.KdStarGStarPgStar>=1)&&(i5.u12.Pip2>=1))"
Computing Next relation with stutter on 4 deadlock states
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.274282,20156,1,0,2465,164,1153,3413,194,420,12222
an accepting run exists (use option '-e' to print it)
Formula 12 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-12 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 13 : !(("(i3.u8.KdStarGStarPgStarP3P2>=1)"))
Formula 13 simplified : !"(i3.u8.KdStarGStarPgStarP3P2>=1)"
Computing Next relation with stutter on 4 deadlock states
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.275826,20156,1,0,2465,164,1157,3413,194,420,12230
an accepting run exists (use option '-e' to print it)
Formula 13 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-13 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 14 : !((F((F(G("((u5.KdStarGStarP3kStar>=1)&&(i5.u12.Pip2>=1))")))U(("((u9.KdStarPgStar>=1)&&(i5.u12.Pip2>=1))")U("((i0.u4.KdStarGStarP3>=1)&&(i3.u10.Pg>=1))")))))
Formula 14 simplified : !F(FG"((u5.KdStarGStarP3kStar>=1)&&(i5.u12.Pip2>=1))" U ("((u9.KdStarPgStar>=1)&&(i5.u12.Pip2>=1))" U "((i0.u4.KdStarGStarP3>=1)&&(i3.u10.Pg>=1))"))
Computing Next relation with stutter on 4 deadlock states
2 unique states visited
2 strongly connected components in search stack
2 transitions explored
2 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.283387,20156,1,0,2669,164,1189,3659,194,420,13104
an accepting run exists (use option '-e' to print it)
Formula 14 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-14 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 15 : !((F("(i2.u1.DAGE>=1)")))
Formula 15 simplified : !F"(i2.u1.DAGE>=1)"
Computing Next relation with stutter on 4 deadlock states
2 unique states visited
2 strongly connected components in search stack
2 transitions explored
2 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.291847,20156,1,0,2913,164,1220,4000,194,420,13838
an accepting run exists (use option '-e' to print it)
Formula 15 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-15 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
WARNING : LTS min runner thread was asked to interrupt. Dying gracefully.

BK_STOP 1527414185382

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 27, 2018 9:43:02 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 27, 2018 9:43:02 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 27, 2018 9:43:02 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 58 ms
May 27, 2018 9:43:02 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 39 places.
May 27, 2018 9:43:02 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 64 transitions.
May 27, 2018 9:43:02 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 29 ms
May 27, 2018 9:43:02 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 27, 2018 9:43:02 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 123 ms
May 27, 2018 9:43:02 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 54 ms
Begin: Sun May 27 09:43:03 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Sun May 27 09:43:03 2018
network size: 39 nodes, 138 links, 128 weight
quality increased from -0.0310669 to 0.420563
end computation: Sun May 27 09:43:03 2018
level 1:
start computation: Sun May 27 09:43:03 2018
network size: 13 nodes, 69 links, 128 weight
quality increased from 0.420563 to 0.494049
end computation: Sun May 27 09:43:03 2018
level 2:
start computation: Sun May 27 09:43:03 2018
network size: 7 nodes, 39 links, 128 weight
quality increased from 0.494049 to 0.494049
end computation: Sun May 27 09:43:03 2018
End: Sun May 27 09:43:03 2018
Total duration: 0 sec
0.494049
May 27, 2018 9:43:03 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 27, 2018 9:43:03 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 31 ms
May 27, 2018 9:43:03 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 27, 2018 9:43:03 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 39 redundant transitions.
May 27, 2018 9:43:03 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 6 ms
May 27, 2018 9:43:03 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSLTLTools
INFO: Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 2 ms
May 27, 2018 9:43:03 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 64 transitions.
May 27, 2018 9:43:03 AM org.smtlib.impl.Script execute
WARNING: Script execution failed on command (define-fun _enabledsrc__52 ((src (Array Int Int))) Bool (>= (select src 3) 1)) with error
May 27, 2018 9:43:03 AM org.smtlib.impl.Script execute
WARNING: Script execution failed on command (define-fun _enabled__52 ((step Int)) Bool (_enabledsrc__52 (select s step))) with error (error "Error writing to Z3 solver: java.io.IOException: Stream closed")
Skipping mayMatrices nes/nds Error when declaring system variables to SMT solver.(error "Error writing to Z3 solver: java.io.IOException: Stream closed")
java.lang.RuntimeException: Error when declaring system variables to SMT solver.(error "Error writing to Z3 solver: java.io.IOException: Stream closed")
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.init(NextBMCSolver.java:93)
at fr.lip6.move.gal.gal2smt.bmc.KInductionSolver.init(KInductionSolver.java:59)
at fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver.init(NecessaryEnablingsolver.java:71)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.printLabels(Gal2PinsTransformerNext.java:471)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.printDependencyMatrix(Gal2PinsTransformerNext.java:209)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.buildBodyFile(Gal2PinsTransformerNext.java:85)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.transform(Gal2PinsTransformerNext.java:830)
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:71)
at java.lang.Thread.run(Thread.java:748)
May 27, 2018 9:43:03 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 401ms conformant to PINS in folder :/home/mcc/execution

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-01"
export BK_EXAMINATION="LTLFireability"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-01.tgz
mv Angiogenesis-PT-01 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is Angiogenesis-PT-01, examination is LTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r201-qhx1-152732197900002"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;