Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..................
/home/mcc/execution
total 519M
-rw-r--r-- 1 mcc users 1.8M May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 5.6M May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 48M May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 129M May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.2K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 485K May 26 09:27 LTLCardinality.txt
-rw-r--r-- 1 mcc users 1.5M May 26 09:27 LTLCardinality.xml
-rw-r--r-- 1 mcc users 27M May 26 09:27 LTLFireability.txt
-rw-r--r-- 1 mcc users 72M May 26 09:27 LTLFireability.xml
-rw-r--r-- 1 mcc users 1.1M May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 3.3M May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 107 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 345 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 39M May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 101M May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 299K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 707K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 4 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 91M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is TokenRing-PT-050, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r177-smll-152708747800356
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME TokenRing-PT-050-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1527591514791

Flatten gal took : 14593 ms
Applied a total of 0 rules in 40944 ms. Remains 2601 /2601 variables (removed 0) and now considering 127551/127551 (removed 0) transitions.
// Phase 1: matrix 127551 rows 2601 cols
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph4663315178174094032.txt, -o, /tmp/graph4663315178174094032.bin, -w, /tmp/graph4663315178174094032.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph4663315178174094032.bin, -l, -1, -v, -w, /tmp/graph4663315178174094032.weights, -q, 0, -e, 0.001], workingDir=null]
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution] killed by timeout after 400 SECONDS
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
built 2457 ordering constraints for composite.
built 3752 ordering constraints for composite.
built 3452 ordering constraints for composite.
built 3852 ordering constraints for composite.
built 3852 ordering constraints for composite.
built 3352 ordering constraints for composite.
built 3952 ordering constraints for composite.
built 3652 ordering constraints for composite.
built 3652 ordering constraints for composite.
built 3952 ordering constraints for composite.
built 3652 ordering constraints for composite.
built 3552 ordering constraints for composite.
built 4152 ordering constraints for composite.
built 3552 ordering constraints for composite.
built 3952 ordering constraints for composite.
built 4052 ordering constraints for composite.
built 3752 ordering constraints for composite.
built 3552 ordering constraints for composite.
built 3552 ordering constraints for composite.
built 3952 ordering constraints for composite.
built 3852 ordering constraints for composite.
built 3652 ordering constraints for composite.
built 36447 ordering constraints for composite.
built 3652 ordering constraints for composite.
built 3852 ordering constraints for composite.
built 3852 ordering constraints for composite.
built 3352 ordering constraints for composite.
built 3952 ordering constraints for composite.
built 3752 ordering constraints for composite.
built 3752 ordering constraints for composite.
built 4052 ordering constraints for composite.
built 3852 ordering constraints for composite.
built 3952 ordering constraints for composite.
built 3652 ordering constraints for composite.
built 3752 ordering constraints for composite.
built 3952 ordering constraints for composite.
built 4052 ordering constraints for composite.
built 3552 ordering constraints for composite.
built 3852 ordering constraints for composite.
built 3452 ordering constraints for composite.
built 3552 ordering constraints for composite.
built 3852 ordering constraints for composite.
built 3752 ordering constraints for composite.
built 4052 ordering constraints for composite.
built 3552 ordering constraints for composite.
built 3252 ordering constraints for composite.
built 3552 ordering constraints for composite.
built 3652 ordering constraints for composite.
built 3452 ordering constraints for composite.
built 3652 ordering constraints for composite.
built 3752 ordering constraints for composite.
built 4052 ordering constraints for composite.
built 3952 ordering constraints for composite.

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 29, 2018 10:58:36 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 29, 2018 10:58:36 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 29, 2018 10:58:40 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 3651 ms
May 29, 2018 10:58:40 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 2601 places.
May 29, 2018 10:58:43 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 127551 transitions.
May 29, 2018 10:58:58 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 14589 ms
May 29, 2018 10:58:59 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 729 ms
May 29, 2018 10:59:06 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 127551 transitions.
May 29, 2018 11:02:32 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 29, 2018 11:02:41 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 127551 transitions.
May 29, 2018 11:02:41 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (127551) to apply POR reductions. Disabling POR matrices.
May 29, 2018 11:02:45 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 12719 ms
May 29, 2018 11:02:47 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 14632ms conformant to PINS in folder :/home/mcc/execution
May 29, 2018 11:02:54 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 9360 ms
Begin: Tue May 29 11:03:04 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Tue May 29 11:03:04 2018
network size: 2601 nodes, 132804 links, 255102 weight
quality increased from -0.000389024 to 0.285832
end computation: Tue May 29 11:03:04 2018
level 1:
start computation: Tue May 29 11:03:04 2018
network size: 1138 nodes, 90374 links, 255102 weight
quality increased from 0.285832 to 0.410676
end computation: Tue May 29 11:03:04 2018
level 2:
start computation: Tue May 29 11:03:04 2018
network size: 495 nodes, 44055 links, 255102 weight
quality increased from 0.410676 to 0.463365
end computation: Tue May 29 11:03:04 2018
level 3:
start computation: Tue May 29 11:03:04 2018
network size: 212 nodes, 18458 links, 255102 weight
quality increased from 0.463365 to 0.531079
end computation: Tue May 29 11:03:04 2018
level 4:
start computation: Tue May 29 11:03:04 2018
network size: 60 nodes, 3536 links, 255102 weight
quality increased from 0.531079 to 0.531696
end computation: Tue May 29 11:03:04 2018
level 5:
start computation: Tue May 29 11:03:04 2018
network size: 52 nodes, 2704 links, 255102 weight
quality increased from 0.531696 to 0.531696
end computation: Tue May 29 11:03:04 2018
End: Tue May 29 11:03:04 2018
Total duration: 0 sec
0.531696
May 29, 2018 11:03:04 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 29, 2018 11:03:13 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 8605 ms
May 29, 2018 11:03:13 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution] killed by timeout after 400 SECONDS
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:78)
at java.lang.Thread.run(Thread.java:748)
May 29, 2018 11:19:58 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 303163 redundant transitions.
May 29, 2018 11:20:00 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 708 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="TokenRing-PT-050"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/TokenRing-PT-050.tgz
mv TokenRing-PT-050 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is TokenRing-PT-050, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r177-smll-152708747800356"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;