Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.....................
/home/mcc/execution
total 1.5M
-rw-r--r-- 1 mcc users 3.4K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.8K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.9K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.7K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 6.4K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 111 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 349 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.9K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 16K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 7 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rwxr-xr-x 1 mcc users 1.3M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is SquareGrid-PT-130613, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r165-smll-152705516300205
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME SquareGrid-PT-130613-UpperBounds-00
FORMULA_NAME SquareGrid-PT-130613-UpperBounds-01
FORMULA_NAME SquareGrid-PT-130613-UpperBounds-02
FORMULA_NAME SquareGrid-PT-130613-UpperBounds-03
FORMULA_NAME SquareGrid-PT-130613-UpperBounds-04
FORMULA_NAME SquareGrid-PT-130613-UpperBounds-05
FORMULA_NAME SquareGrid-PT-130613-UpperBounds-06
FORMULA_NAME SquareGrid-PT-130613-UpperBounds-07
FORMULA_NAME SquareGrid-PT-130613-UpperBounds-08
FORMULA_NAME SquareGrid-PT-130613-UpperBounds-09
FORMULA_NAME SquareGrid-PT-130613-UpperBounds-10
FORMULA_NAME SquareGrid-PT-130613-UpperBounds-11
FORMULA_NAME SquareGrid-PT-130613-UpperBounds-12
FORMULA_NAME SquareGrid-PT-130613-UpperBounds-13
FORMULA_NAME SquareGrid-PT-130613-UpperBounds-14
FORMULA_NAME SquareGrid-PT-130613-UpperBounds-15

=== Now, execution of the tool begins

BK_START 1527499767988

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph104902607245979457.txt, -o, /tmp/graph104902607245979457.bin, -w, /tmp/graph104902607245979457.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph104902607245979457.bin, -l, -1, -v, -w, /tmp/graph104902607245979457.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/UpperBounds.pnml.gal, -t, CGAL, -reachable-file, UpperBounds.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/UpperBounds.pnml.gal -t CGAL -reachable-file UpperBounds.prop --nowitness
Loading property file UpperBounds.prop.
Read [bounds] property : SquareGrid-PT-130613-UpperBounds-00 with value :i9.u182.p1o_1_1
Read [bounds] property : SquareGrid-PT-130613-UpperBounds-01 with value :i29.u68.p1il_6_2
Read [bounds] property : SquareGrid-PT-130613-UpperBounds-02 with value :i12.u539.p4i_9_14
Read [bounds] property : SquareGrid-PT-130613-UpperBounds-03 with value :i30.u267.p1o_8_11
Read [bounds] property : SquareGrid-PT-130613-UpperBounds-04 with value :i26.u158.p1i_4_9
Read [bounds] property : SquareGrid-PT-130613-UpperBounds-05 with value :i32.u525.p4il_7_14
Read [bounds] property : SquareGrid-PT-130613-UpperBounds-06 with value :i9.u667.p4o_2_1
Read [bounds] property : SquareGrid-PT-130613-UpperBounds-07 with value :i17.u773.pbl_10_7
Read [bounds] property : SquareGrid-PT-130613-UpperBounds-08 with value :i15.u16.p1i_11_12
Read [bounds] property : SquareGrid-PT-130613-UpperBounds-09 with value :i4.u863.pb2_6_6
Read [bounds] property : SquareGrid-PT-130613-UpperBounds-10 with value :i7.u398.p4il_2_13
Read [bounds] property : SquareGrid-PT-130613-UpperBounds-11 with value :i16.u633.p4ol_9_2
Read [bounds] property : SquareGrid-PT-130613-UpperBounds-12 with value :i17.u471.p4il_11_7
Read [bounds] property : SquareGrid-PT-130613-UpperBounds-13 with value :i33.u448.p4il_9_6
Read [bounds] property : SquareGrid-PT-130613-UpperBounds-14 with value :i21.u818.pb4_2_6
Read [bounds] property : SquareGrid-PT-130613-UpperBounds-15 with value :i25.u502.p4il_4_4
built 112 ordering constraints for composite.
built 72 ordering constraints for composite.
built 106 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 106 ordering constraints for composite.
built 72 ordering constraints for composite.
built 106 ordering constraints for composite.
built 90 ordering constraints for composite.
built 72 ordering constraints for composite.
built 140 ordering constraints for composite.
built 106 ordering constraints for composite.
built 106 ordering constraints for composite.
built 106 ordering constraints for composite.
built 106 ordering constraints for composite.
built 72 ordering constraints for composite.
built 106 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 106 ordering constraints for composite.
built 106 ordering constraints for composite.
built 90 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 56 ordering constraints for composite.
built 106 ordering constraints for composite.
built 72 ordering constraints for composite.
built 106 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 90 ordering constraints for composite.
built 56 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution UpperBounds -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination UpperBounds -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 28, 2018 9:29:30 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, UpperBounds, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 28, 2018 9:29:30 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 28, 2018 9:29:30 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 409 ms
May 28, 2018 9:29:30 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 2301 places.
May 28, 2018 9:29:31 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 2756 transitions.
May 28, 2018 9:29:31 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 28, 2018 9:29:31 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 739 ms
May 28, 2018 9:29:32 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 535 ms
Begin: Mon May 28 09:29:33 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Mon May 28 09:29:33 2018
network size: 2301 nodes, 11128 links, 5512 weight
quality increased from -0.000626421 to 0.498213
end computation: Mon May 28 09:29:33 2018
level 1:
start computation: Mon May 28 09:29:33 2018
network size: 897 nodes, 3705 links, 5512 weight
quality increased from 0.498213 to 0.88087
end computation: Mon May 28 09:29:33 2018
level 2:
start computation: Mon May 28 09:29:33 2018
network size: 169 nodes, 793 links, 5512 weight
quality increased from 0.88087 to 0.909089
end computation: Mon May 28 09:29:33 2018
level 3:
start computation: Mon May 28 09:29:33 2018
network size: 75 nodes, 401 links, 5512 weight
quality increased from 0.909089 to 0.922269
end computation: Mon May 28 09:29:33 2018
level 4:
start computation: Mon May 28 09:29:33 2018
network size: 36 nodes, 194 links, 5512 weight
quality increased from 0.922269 to 0.922456
end computation: Mon May 28 09:29:33 2018
level 5:
start computation: Mon May 28 09:29:33 2018
network size: 35 nodes, 189 links, 5512 weight
quality increased from 0.922456 to 0.922456
end computation: Mon May 28 09:29:33 2018
End: Mon May 28 09:29:33 2018
Total duration: 0 sec
0.922456
May 28, 2018 9:29:33 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 28, 2018 9:29:33 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 287 ms
May 28, 2018 9:29:33 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 28, 2018 9:29:35 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 2704 redundant transitions.
May 28, 2018 9:29:35 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/UpperBounds.pnml.gal : 60 ms
May 28, 2018 9:29:35 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/UpperBounds.prop : 0 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="SquareGrid-PT-130613"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/SquareGrid-PT-130613.tgz
mv SquareGrid-PT-130613 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is SquareGrid-PT-130613, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r165-smll-152705516300205"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;