Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..................
/home/mcc/execution
total 2.4M
-rw-r--r-- 1 mcc users 7.2K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 33K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 62K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 209K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 6.4K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 26K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 13K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 45K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 8.6K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 38K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 104 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 342 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 60K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 193K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 3.0K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 7.5K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 1.7M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is SafeBus-PT-10, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r153-smll-152685551200244
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME SafeBus-PT-10-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1527437827580

Flatten gal took : 683 ms
Applied a total of 0 rules in 91 ms. Remains 306 /306 variables (removed 0) and now considering 1631/1631 (removed 0) transitions.
Normalized transition count is 642
// Phase 1: matrix 642 rows 306 cols
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph5818322329942887009.txt, -o, /tmp/graph5818322329942887009.bin, -w, /tmp/graph5818322329942887009.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph5818322329942887009.bin, -l, -1, -v, -w, /tmp/graph5818322329942887009.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
built 29 ordering constraints for composite.
built 496 ordering constraints for composite.
built 1064 ordering constraints for composite.
Compilation finished in 24069 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 59 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 27, 2018 4:17:09 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 27, 2018 4:17:09 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 27, 2018 4:17:09 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 255 ms
May 27, 2018 4:17:09 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 316 places.
May 27, 2018 4:17:10 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 1631 transitions.
May 27, 2018 4:17:10 PM fr.lip6.move.gal.instantiate.DomainAnalyzer computeVariableDomains
INFO: Found a total of 10 fixed domain variables (out of 316 variables) in GAL type SafeBus_PT_10
May 27, 2018 4:17:10 PM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: Found a total of 10 constant array cells/variables (out of 316 variables) in type SafeBus_PT_10
May 27, 2018 4:17:10 PM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: msgl_6,msgl_9,msgl_10,msgl_3,msgl_4,msgl_2,msgl_1,msgl_8,msgl_7,msgl_5,
May 27, 2018 4:17:10 PM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Removed 10 constant variables :msgl_6=1, msgl_9=1, msgl_10=1, msgl_3=1, msgl_4=1, msgl_2=1, msgl_1=1, msgl_8=1, msgl_7=1, msgl_5=1
May 27, 2018 4:17:10 PM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Simplified 90 expressions due to constant valuations.
May 27, 2018 4:17:10 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 677 ms
May 27, 2018 4:17:10 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 48 ms
May 27, 2018 4:17:11 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 1631 transitions.
May 27, 2018 4:17:12 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 27, 2018 4:17:12 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 1631 transitions.
May 27, 2018 4:17:12 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (1631) to apply POR reductions. Disabling POR matrices.
May 27, 2018 4:17:12 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 334 ms
May 27, 2018 4:17:12 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 546ms conformant to PINS in folder :/home/mcc/execution
May 27, 2018 4:17:12 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 303 ms
Begin: Sun May 27 16:17:13 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Sun May 27 16:17:13 2018
network size: 306 nodes, 4568 links, 3262 weight
quality increased from -0.0198376 to 0.292961
end computation: Sun May 27 16:17:13 2018
level 1:
start computation: Sun May 27 16:17:13 2018
network size: 19 nodes, 239 links, 3262 weight
quality increased from 0.292961 to 0.337764
end computation: Sun May 27 16:17:13 2018
level 2:
start computation: Sun May 27 16:17:13 2018
network size: 7 nodes, 47 links, 3262 weight
quality increased from 0.337764 to 0.342936
end computation: Sun May 27 16:17:13 2018
level 3:
start computation: Sun May 27 16:17:13 2018
network size: 6 nodes, 34 links, 3262 weight
quality increased from 0.342936 to 0.342936
end computation: Sun May 27 16:17:13 2018
End: Sun May 27 16:17:13 2018
Total duration: 0 sec
0.342936
May 27, 2018 4:17:13 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 27, 2018 4:17:13 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 221 ms
May 27, 2018 4:17:13 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 27, 2018 4:17:16 PM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 2593 redundant transitions.
May 27, 2018 4:17:16 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 19 ms
ITS-tools command line returned an error code 134

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="SafeBus-PT-10"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/SafeBus-PT-10.tgz
mv SafeBus-PT-10 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is SafeBus-PT-10, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r153-smll-152685551200244"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;