Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..................
/home/mcc/execution
total 316K
-rw-r--r-- 1 mcc users 5.0K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 27K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 4.8K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 24K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.5K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 9.3K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 3.4K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 15K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.3K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 104 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 342 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 7.4K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 34K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 4.1K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 93K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is SafeBus-PT-03, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r153-smll-152685551200230
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME SafeBus-PT-03-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1527430379509

Flatten gal took : 145 ms
Applied a total of 0 rules in 10 ms. Remains 54 /54 variables (removed 0) and now considering 91/91 (removed 0) transitions.
Normalized transition count is 68
// Phase 1: matrix 68 rows 54 cols
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.
Normalized transition count is 68
// Phase 1: matrix 68 rows 54 cols
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph8071925357043948710.txt, -o, /tmp/graph8071925357043948710.bin, -w, /tmp/graph8071925357043948710.weights], workingDir=null]
invariant :AMC_1_1 + AMC_1_2 + AMC_1_3 + RMC_1 + PMC_1 + -1'wait_cable_1 = 0
invariant :wait_ack_1_2 + wait_ack_1_3 + listen_1 + wait_cable_1 + wait_msg_1 + loop_em_1 = 1
invariant :AMC_2_1 + AMC_2_2 + AMC_2_3 + RMC_2 + PMC_2 + -1'wait_cable_2 = 0
invariant :Cpt2_2 + -2'AMC_1_2 + -2'AMC_2_2 + -2'AMC_3_2 + -1'AMC_1_3 + -1'AMC_2_3 + -1'AMC_3_3 + -1'RMC_1 + -1'RMC_2 + -1'RMC_3 + -1'PMC_1 + -1'PMC_2 + -1'PMC_3 + wait_cable_1 + wait_cable_2 + wait_cable_3 + Cpt1_1 + Cpt1_3 = 1
invariant :-1'wait_ack_1_2 + -1'wait_ack_1_3 + cable_used_1 + -1'FMC_1 + -1'PMC_1 = 0
invariant :Cpt2_1 + AMC_1_2 + AMC_2_2 + AMC_3_2 + 2'AMC_1_3 + 2'AMC_2_3 + 2'AMC_3_3 + RMC_1 + RMC_2 + RMC_3 + PMC_1 + PMC_2 + PMC_3 + -1'wait_cable_1 + -1'wait_cable_2 + -1'wait_cable_3 + -1'Cpt1_1 = 0
invariant :AMC_3_1 + AMC_3_2 + AMC_3_3 + RMC_3 + PMC_3 + -1'wait_cable_3 = 0
invariant :ACK + T_out + -1'wait_ack_2_1 + -1'wait_ack_3_1 + -1'wait_ack_1_2 + -1'wait_ack_3_2 + -1'wait_ack_1_3 + -1'wait_ack_2_3 + MSG_1 + MSG_2 + MSG_3 = 0
invariant :Cpt1_1 + Cpt1_2 + Cpt1_3 = 1
invariant :R_tout + S_tout = 1
invariant :Cpt2_3 + AMC_1_2 + AMC_2_2 + AMC_3_2 + -1'AMC_1_3 + -1'AMC_2_3 + -1'AMC_3_3 + -1'Cpt1_3 = 0
invariant :-1'wait_ack_2_1 + -1'wait_ack_2_3 + cable_used_2 + -1'FMC_2 + -1'PMC_2 = 0
invariant :-1'wait_ack_3_1 + -1'wait_ack_3_2 + cable_used_3 + -1'FMC_3 + -1'PMC_3 = 0
invariant :wait_ack_3_1 + wait_ack_3_2 + listen_3 + wait_cable_3 + wait_msg_3 + loop_em_3 = 1
invariant :FMCb + FMC_1 + FMC_2 + FMC_3 = 1
invariant :wait_ack_2_1 + wait_ack_3_1 + wait_ack_1_2 + wait_ack_3_2 + wait_ack_1_3 + wait_ack_2_3 + FMC_1 + FMC_2 + FMC_3 + cable_free + PMC_1 + PMC_2 + PMC_3 = 1
invariant :wait_ack_2_1 + wait_ack_2_3 + listen_2 + wait_cable_2 + wait_msg_2 + loop_em_2 = 1
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph8071925357043948710.bin, -l, -1, -v, -w, /tmp/graph8071925357043948710.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
built 5 ordering constraints for composite.
built 38 ordering constraints for composite.
built 39 ordering constraints for composite.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,4650,2.65642,68364,638,1846,19766,13280,304,283257,161,742829,0


Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
dead,0,3.02254,68364,1,0,19766,24350,795,283257,940,742829,13608

System contains 0 deadlocks (shown below if less than --print-limit option) !
FORMULA SafeBus-PT-03-ReachabilityDeadlock-0 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
[ 0 ]
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
WARNING : LTS min runner thread was asked to interrupt. Dying gracefully.

BK_STOP 1527430387727

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 27, 2018 2:13:01 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 27, 2018 2:13:02 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 27, 2018 2:13:02 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 99 ms
May 27, 2018 2:13:02 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 57 places.
May 27, 2018 2:13:02 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 91 transitions.
May 27, 2018 2:13:02 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 22 ms
May 27, 2018 2:13:02 PM fr.lip6.move.gal.instantiate.DomainAnalyzer computeVariableDomains
INFO: Found a total of 3 fixed domain variables (out of 57 variables) in GAL type SafeBus_PT_03
May 27, 2018 2:13:02 PM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: Found a total of 3 constant array cells/variables (out of 57 variables) in type SafeBus_PT_03
May 27, 2018 2:13:02 PM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: msgl_1,msgl_3,msgl_2,
May 27, 2018 2:13:02 PM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Removed 3 constant variables :msgl_1=1, msgl_3=1, msgl_2=1
May 27, 2018 2:13:02 PM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Simplified 6 expressions due to constant valuations.
May 27, 2018 2:13:02 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 139 ms
May 27, 2018 2:13:02 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 7 ms
May 27, 2018 2:13:02 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 91 transitions.
May 27, 2018 2:13:03 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 27, 2018 2:13:03 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 52 ms
May 27, 2018 2:13:03 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 91 transitions.
May 27, 2018 2:13:03 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 56 ms
May 27, 2018 2:13:03 PM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver computeAndDeclareInvariants
INFO: Computed 17 place invariants in 10 ms
Begin: Sun May 27 14:13:03 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Sun May 27 14:13:03 2018
network size: 54 nodes, 494 links, 182 weight
quality increased from -0.0269719 to 0.39409
end computation: Sun May 27 14:13:03 2018
level 1:
start computation: Sun May 27 14:13:03 2018
network size: 6 nodes, 28 links, 182 weight
quality increased from 0.39409 to 0.40286
end computation: Sun May 27 14:13:03 2018
level 2:
start computation: Sun May 27 14:13:03 2018
network size: 3 nodes, 9 links, 182 weight
quality increased from 0.40286 to 0.40286
end computation: Sun May 27 14:13:03 2018
End: Sun May 27 14:13:03 2018
Total duration: 0 sec
0.40286
May 27, 2018 2:13:03 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 27, 2018 2:13:03 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 43 ms
May 27, 2018 2:13:03 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 27, 2018 2:13:03 PM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 58 redundant transitions.
May 27, 2018 2:13:03 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 5 ms
May 27, 2018 2:13:03 PM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver init
INFO: Proved 54 variables to be positive in 460 ms
May 27, 2018 2:13:03 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may disable matrix : 91 transitions.
May 27, 2018 2:13:03 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of disable matrix completed :0/91 took 0 ms. Total solver calls (SAT/UNSAT): 0(0/0)
May 27, 2018 2:13:03 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete disable matrix. took 12 ms. Total solver calls (SAT/UNSAT): 0(0/0)
May 27, 2018 2:13:03 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may enable matrix : 91 transitions.
May 27, 2018 2:13:03 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete enable matrix. took 11 ms. Total solver calls (SAT/UNSAT): 0(0/0)
May 27, 2018 2:13:03 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeCoEnablingMatrix
INFO: Computing symmetric co enabling matrix : 91 transitions.
May 27, 2018 2:13:06 PM org.smtlib.impl.Script execute
WARNING: Script execution failed on command (declare-fun s0 () (Array Int Int)) with error (error "Error writing to Z3 solver: java.io.IOException: Broken pipe")
[(declare-fun s0 () (Array Int Int)), (assert (= (+ (select s0 4) (select s0 9) (select s0 33) (select s0 37) 0) (select s0 26))), (assert (= 1 (+ (select s0 28) (select s0 32) (select s0 33) (select s0 34)))), (assert (= 1 (+ (select s0 4) (select s0 5) (select s0 6) (select s0 7) (select s0 8) (select s0 9) (select s0 32) (select s0 33) (select s0 34) (select s0 35) (select s0 36) (select s0 37) (select s0 38)))), (assert (and (>= (select s0 26) 1) (>= (select s0 33) 1))), (assert (>= (select s0 4) 0)), (assert (>= (select s0 5) 0)), (assert (>= (select s0 6) 0)), (assert (>= (select s0 7) 0)), (assert (>= (select s0 8) 0)), (assert (>= (select s0 9) 0)), (assert (>= (select s0 26) 0)), (assert (>= (select s0 28) 0)), (assert (>= (select s0 32) 0)), (assert (>= (select s0 33) 0)), (assert (>= (select s0 34) 0)), (assert (>= (select s0 35) 0)), (assert (>= (select s0 36) 0)), (assert (>= (select s0 37) 0)), (assert (>= (select s0 38) 0))]
Skipping mayMatrices nes/nds SMT solver raised an exception or timeout when executing script :
org.smtlib.impl.Script@2abae550
java.lang.RuntimeException: SMT solver raised an exception or timeout when executing script :
org.smtlib.impl.Script@2abae550
at fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver.computeCoEnablingMatrix(NecessaryEnablingsolver.java:448)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.printLabels(Gal2PinsTransformerNext.java:530)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.printDependencyMatrix(Gal2PinsTransformerNext.java:209)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.buildBodyFile(Gal2PinsTransformerNext.java:85)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.transform(Gal2PinsTransformerNext.java:830)
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:71)
at java.lang.Thread.run(Thread.java:748)
May 27, 2018 2:13:06 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 3613ms conformant to PINS in folder :/home/mcc/execution

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="SafeBus-PT-03"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/SafeBus-PT-03.tgz
mv SafeBus-PT-03 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is SafeBus-PT-03, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r153-smll-152685551200230"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;