Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...................
/home/mcc/execution
total 21M
-rw-r--r-- 1 mcc users 13K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 41K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 259K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 736K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.2K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 26K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 67K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 30K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 78K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 24K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 73K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 110 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 348 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 68K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 213K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 4.9K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 7 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 19M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is PolyORBNT-PT-S10J80, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r129-smll-152673531800398
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME PolyORBNT-PT-S10J80-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1527605274631

Flatten gal took : 3934 ms
Constant places removed 10 places and 0 transitions.
Reduce isomorphic transitions removed 10110 transitions.
Performed 88 Post agglomeration using F-continuation condition.
Iterating post reduction 0 with 10208 rules applied. Total rules applied 10208 place count 1604 transition count 3302
Constant places removed 88 places and 0 transitions.
Iterating post reduction 1 with 88 rules applied. Total rules applied 10296 place count 1516 transition count 3302
Performed 84 Pre agglomeration using Quasi-Persistent + HF-interchangeable + Divergent Free condition.
Pre-agglomeration after 2 with 84 Pre rules applied. Total rules applied 10296 place count 1516 transition count 3218
Constant places removed 84 places and 0 transitions.
Iterating post reduction 2 with 84 rules applied. Total rules applied 10380 place count 1432 transition count 3218
Performed 2 Post agglomeration using F-continuation condition.
Constant places removed 2 places and 0 transitions.
Iterating post reduction 3 with 2 rules applied. Total rules applied 10382 place count 1430 transition count 3216
Applied a total of 10382 rules in 1011 ms. Remains 1430 /1614 variables (removed 184) and now considering 3216/13500 (removed 10284) transitions.
Normalized transition count is 3207
// Phase 1: matrix 3207 rows 1430 cols
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph2453638698194136004.txt, -o, /tmp/graph2453638698194136004.bin, -w, /tmp/graph2453638698194136004.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph2453638698194136004.bin, -l, -1, -v, -w, /tmp/graph2453638698194136004.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
built 158 ordering constraints for composite.
built 1246 ordering constraints for composite.
built 330 ordering constraints for composite.
Compilation finished in 58623 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 78 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 29, 2018 2:47:56 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 29, 2018 2:47:56 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 29, 2018 2:47:57 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 1035 ms
May 29, 2018 2:47:57 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 1614 places.
May 29, 2018 2:47:58 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 13500 transitions.
May 29, 2018 2:48:02 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 3929 ms
May 29, 2018 2:48:02 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 279 ms
May 29, 2018 2:48:04 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 13500 transitions.
May 29, 2018 2:48:09 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 29, 2018 2:48:09 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 3216 transitions.
May 29, 2018 2:48:09 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (3216) to apply POR reductions. Disabling POR matrices.
May 29, 2018 2:48:10 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 611 ms
May 29, 2018 2:48:10 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 663ms conformant to PINS in folder :/home/mcc/execution
May 29, 2018 2:48:10 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 487 ms
Begin: Tue May 29 14:48:11 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Tue May 29 14:48:11 2018
network size: 1430 nodes, 14930 links, 6432 weight
quality increased from -0.01092 to 0.490348
end computation: Tue May 29 14:48:11 2018
level 1:
start computation: Tue May 29 14:48:11 2018
network size: 84 nodes, 2226 links, 6432 weight
quality increased from 0.490348 to 0.50635
end computation: Tue May 29 14:48:11 2018
level 2:
start computation: Tue May 29 14:48:11 2018
network size: 54 nodes, 366 links, 6432 weight
quality increased from 0.50635 to 0.50635
end computation: Tue May 29 14:48:11 2018
End: Tue May 29 14:48:11 2018
Total duration: 0 sec
0.50635
May 29, 2018 2:48:11 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 29, 2018 2:48:11 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 491 ms
May 29, 2018 2:48:11 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 29, 2018 2:48:14 PM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 2639 redundant transitions.
May 29, 2018 2:48:14 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 56 ms
ITS-tools command line returned an error code 134

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="PolyORBNT-PT-S10J80"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/PolyORBNT-PT-S10J80.tgz
mv PolyORBNT-PT-S10J80 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is PolyORBNT-PT-S10J80, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r129-smll-152673531800398"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;