Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.......................
/home/mcc/execution
total 2.8M
-rw-r--r-- 1 mcc users 14K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 50K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 13K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 45K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.2K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 6.9K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 21K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 5.8K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 26K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 25K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 75K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 110 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 348 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 53K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 172K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 5.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 7 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 2.3M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is PolyORBNT-PT-S05J60, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r129-smll-152673531700354
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME PolyORBNT-PT-S05J60-CTLFireability-00
FORMULA_NAME PolyORBNT-PT-S05J60-CTLFireability-01
FORMULA_NAME PolyORBNT-PT-S05J60-CTLFireability-02
FORMULA_NAME PolyORBNT-PT-S05J60-CTLFireability-03
FORMULA_NAME PolyORBNT-PT-S05J60-CTLFireability-04
FORMULA_NAME PolyORBNT-PT-S05J60-CTLFireability-05
FORMULA_NAME PolyORBNT-PT-S05J60-CTLFireability-06
FORMULA_NAME PolyORBNT-PT-S05J60-CTLFireability-07
FORMULA_NAME PolyORBNT-PT-S05J60-CTLFireability-08
FORMULA_NAME PolyORBNT-PT-S05J60-CTLFireability-09
FORMULA_NAME PolyORBNT-PT-S05J60-CTLFireability-10
FORMULA_NAME PolyORBNT-PT-S05J60-CTLFireability-11
FORMULA_NAME PolyORBNT-PT-S05J60-CTLFireability-12
FORMULA_NAME PolyORBNT-PT-S05J60-CTLFireability-13
FORMULA_NAME PolyORBNT-PT-S05J60-CTLFireability-14
FORMULA_NAME PolyORBNT-PT-S05J60-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1527567831885

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph198269630729577866.txt, -o, /tmp/graph198269630729577866.bin, -w, /tmp/graph198269630729577866.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph198269630729577866.bin, -l, -1, -v, -w, /tmp/graph198269630729577866.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
built 108 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 247 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 566 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 23 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
built 14 ordering constraints for composite.
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc

BK_STOP 1527568399673

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 29, 2018 4:23:54 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 29, 2018 4:23:54 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 29, 2018 4:23:54 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 320 ms
May 29, 2018 4:23:54 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 909 places.
May 29, 2018 4:23:54 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 1970 transitions.
May 29, 2018 4:23:54 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 29, 2018 4:23:55 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 727 ms
May 29, 2018 4:23:56 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 605 ms
Begin: Tue May 29 04:23:57 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Tue May 29 04:23:57 2018
network size: 909 nodes, 8950 links, 3940 weight
quality increased from -0.0177719 to 0.499965
end computation: Tue May 29 04:23:57 2018
level 1:
start computation: Tue May 29 04:23:57 2018
network size: 130 nodes, 3338 links, 3940 weight
quality increased from 0.499965 to 0.522818
end computation: Tue May 29 04:23:57 2018
level 2:
start computation: Tue May 29 04:23:57 2018
network size: 64 nodes, 1524 links, 3940 weight
quality increased from 0.522818 to 0.536767
end computation: Tue May 29 04:23:57 2018
level 3:
start computation: Tue May 29 04:23:57 2018
network size: 37 nodes, 245 links, 3940 weight
quality increased from 0.536767 to 0.536767
end computation: Tue May 29 04:23:57 2018
End: Tue May 29 04:23:57 2018
Total duration: 0 sec
0.536767
May 29, 2018 4:23:57 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 29, 2018 4:23:57 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 491 ms
May 29, 2018 4:23:58 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 29, 2018 4:23:59 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 1618 redundant transitions.
May 29, 2018 4:23:59 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 57 ms
May 29, 2018 4:23:59 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 10 ms
ITS-tools command line returned an error code 134

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="PolyORBNT-PT-S05J60"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/PolyORBNT-PT-S05J60.tgz
mv PolyORBNT-PT-S05J60 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is PolyORBNT-PT-S05J60, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r129-smll-152673531700354"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;