Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..................
/home/mcc/execution
total 5.4M
-rw-r--r-- 1 mcc users 8.5K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 30K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 16K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 59K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.9K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 6.7K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 22K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 16K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 54K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 12K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 38K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 113 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 351 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 24K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 81K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 2.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 6.0K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 10 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 5.0M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is PolyORBLF-PT-S04J06T08, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r129-smll-152673531500209
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME PolyORBLF-PT-S04J06T08-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1527442121681

Flatten gal took : 1364 ms
Constant places removed 4 places and 0 transitions.
Reduce isomorphic transitions removed 2168 transitions.
Performed 104 Post agglomeration using F-continuation condition.
Iterating post reduction 0 with 2276 rules applied. Total rules applied 2276 place count 788 transition count 1996
Constant places removed 104 places and 0 transitions.
Iterating post reduction 1 with 104 rules applied. Total rules applied 2380 place count 684 transition count 1996
Performed 88 Pre agglomeration using Quasi-Persistent + HF-interchangeable + Divergent Free condition.
Pre-agglomeration after 2 with 88 Pre rules applied. Total rules applied 2380 place count 684 transition count 1908
Constant places removed 88 places and 0 transitions.
Iterating post reduction 2 with 88 rules applied. Total rules applied 2468 place count 596 transition count 1908
Symmetric choice reduction at 3 with 16 rule applications. Total rules 2484 place count 596 transition count 1908
Constant places removed 16 places and 16 transitions.
Iterating post reduction 3 with 16 rules applied. Total rules applied 2500 place count 580 transition count 1892
Symmetric choice reduction at 4 with 2 rule applications. Total rules 2502 place count 580 transition count 1892
Constant places removed 2 places and 16 transitions.
Iterating post reduction 4 with 2 rules applied. Total rules applied 2504 place count 578 transition count 1876
Performed 56 Post agglomeration using F-continuation condition.
Constant places removed 56 places and 0 transitions.
Iterating post reduction 5 with 56 rules applied. Total rules applied 2560 place count 522 transition count 1820
Applied a total of 2560 rules in 579 ms. Remains 522 /792 variables (removed 270) and now considering 1820/4268 (removed 2448) transitions.
Normalized transition count is 1788
// Phase 1: matrix 1788 rows 522 cols
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph5868741359368549505.txt, -o, /tmp/graph5868741359368549505.bin, -w, /tmp/graph5868741359368549505.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph5868741359368549505.bin, -l, -1, -v, -w, /tmp/graph5868741359368549505.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
built 33 ordering constraints for composite.
built 276 ordering constraints for composite.
built 97 ordering constraints for composite.
built 349 ordering constraints for composite.
built 536 ordering constraints for composite.
Compilation finished in 28612 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 59 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 27, 2018 5:28:43 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 27, 2018 5:28:43 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 27, 2018 5:28:44 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 491 ms
May 27, 2018 5:28:44 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 792 places.
May 27, 2018 5:28:44 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 4268 transitions.
May 27, 2018 5:28:46 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 1359 ms
May 27, 2018 5:28:46 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 107 ms
May 27, 2018 5:28:46 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 4268 transitions.
May 27, 2018 5:28:48 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 27, 2018 5:28:49 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 1820 transitions.
May 27, 2018 5:28:49 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (1820) to apply POR reductions. Disabling POR matrices.
May 27, 2018 5:28:49 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 286 ms
May 27, 2018 5:28:49 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 408ms conformant to PINS in folder :/home/mcc/execution
May 27, 2018 5:28:49 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 307 ms
Begin: Sun May 27 17:28:49 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Sun May 27 17:28:49 2018
network size: 522 nodes, 7210 links, 3640 weight
quality increased from -0.00936834 to 0.528701
end computation: Sun May 27 17:28:49 2018
level 1:
start computation: Sun May 27 17:28:49 2018
network size: 38 nodes, 418 links, 3640 weight
quality increased from 0.528701 to 0.58403
end computation: Sun May 27 17:28:49 2018
level 2:
start computation: Sun May 27 17:28:49 2018
network size: 11 nodes, 65 links, 3640 weight
quality increased from 0.58403 to 0.58403
end computation: Sun May 27 17:28:49 2018
End: Sun May 27 17:28:49 2018
Total duration: 0 sec
0.58403
May 27, 2018 5:28:49 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 27, 2018 5:28:50 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 231 ms
May 27, 2018 5:28:50 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 27, 2018 5:28:51 PM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 1069 redundant transitions.
May 27, 2018 5:28:52 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 27 ms
ITS-tools command line returned an error code 134

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="PolyORBLF-PT-S04J06T08"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/PolyORBLF-PT-S04J06T08.tgz
mv PolyORBLF-PT-S04J06T08 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is PolyORBLF-PT-S04J06T08, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r129-smll-152673531500209"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;