Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
......................
/home/mcc/execution
total 30M
-rw-r--r-- 1 mcc users 5.1K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 24K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.6K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.1K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 13K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 7.6K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 117 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 355 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 4.9K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.9K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 4.0K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 9 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 30M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is PhaseVariation-PT-D30CS100, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r117-csrt-152666477300660
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME PhaseVariation-PT-D30CS100-UpperBounds-00
FORMULA_NAME PhaseVariation-PT-D30CS100-UpperBounds-01
FORMULA_NAME PhaseVariation-PT-D30CS100-UpperBounds-02
FORMULA_NAME PhaseVariation-PT-D30CS100-UpperBounds-03
FORMULA_NAME PhaseVariation-PT-D30CS100-UpperBounds-04
FORMULA_NAME PhaseVariation-PT-D30CS100-UpperBounds-05
FORMULA_NAME PhaseVariation-PT-D30CS100-UpperBounds-06
FORMULA_NAME PhaseVariation-PT-D30CS100-UpperBounds-07
FORMULA_NAME PhaseVariation-PT-D30CS100-UpperBounds-08
FORMULA_NAME PhaseVariation-PT-D30CS100-UpperBounds-09
FORMULA_NAME PhaseVariation-PT-D30CS100-UpperBounds-10
FORMULA_NAME PhaseVariation-PT-D30CS100-UpperBounds-11
FORMULA_NAME PhaseVariation-PT-D30CS100-UpperBounds-12
FORMULA_NAME PhaseVariation-PT-D30CS100-UpperBounds-13
FORMULA_NAME PhaseVariation-PT-D30CS100-UpperBounds-14
FORMULA_NAME PhaseVariation-PT-D30CS100-UpperBounds-15

=== Now, execution of the tool begins

BK_START 1527269511647

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph669385555717323119.txt, -o, /tmp/graph669385555717323119.bin, -w, /tmp/graph669385555717323119.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph669385555717323119.bin, -l, -1, -v, -w, /tmp/graph669385555717323119.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/UpperBounds.pnml.gal, -t, CGAL, -reachable-file, UpperBounds.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/UpperBounds.pnml.gal -t CGAL -reachable-file UpperBounds.prop --nowitness
Loading property file UpperBounds.prop.
Read [bounds] property : PhaseVariation-PT-D30CS100-UpperBounds-00 with value :i10.u800.cell___8_11__A_
Read [bounds] property : PhaseVariation-PT-D30CS100-UpperBounds-01 with value :i4.u431.pool__20_22_
Read [bounds] property : PhaseVariation-PT-D30CS100-UpperBounds-02 with value :i16.u459.cell___21_4__B_
Read [bounds] property : PhaseVariation-PT-D30CS100-UpperBounds-03 with value :i21.u746.pool__7_1_
Read [bounds] property : PhaseVariation-PT-D30CS100-UpperBounds-04 with value :i11.u110.cell___27_23__B_
Read [bounds] property : PhaseVariation-PT-D30CS100-UpperBounds-05 with value :i8.u522.cell___24_6__A_
Read [bounds] property : PhaseVariation-PT-D30CS100-UpperBounds-06 with value :i8.u502.pool__23_6_
Read [bounds] property : PhaseVariation-PT-D30CS100-UpperBounds-07 with value :i11.u110.pool__27_23_
Read [bounds] property : PhaseVariation-PT-D30CS100-UpperBounds-08 with value :i21.u774.pool__8_2_
Read [bounds] property : PhaseVariation-PT-D30CS100-UpperBounds-09 with value :i8.u421.pool__20_10_
Read [bounds] property : PhaseVariation-PT-D30CS100-UpperBounds-10 with value :i14.u714.pool__5_22_
Read [bounds] property : PhaseVariation-PT-D30CS100-UpperBounds-11 with value :i10.u95.cell___25_22__A_
Read [bounds] property : PhaseVariation-PT-D30CS100-UpperBounds-12 with value :i5.u251.cell___13_21__A_
Read [bounds] property : PhaseVariation-PT-D30CS100-UpperBounds-13 with value :i15.u749.cell___7_23__A_
Read [bounds] property : PhaseVariation-PT-D30CS100-UpperBounds-14 with value :i11.u112.cell___27_29__B_
Read [bounds] property : PhaseVariation-PT-D30CS100-UpperBounds-15 with value :i1.u52.cell___16_2__A_
built 64 ordering constraints for composite.
built 2184 ordering constraints for composite.
built 1840 ordering constraints for composite.
built 920 ordering constraints for composite.
built 1044 ordering constraints for composite.
built 1720 ordering constraints for composite.
built 1568 ordering constraints for composite.
built 1368 ordering constraints for composite.
built 1164 ordering constraints for composite.
built 1068 ordering constraints for composite.
built 30976 ordering constraints for composite.
built 1344 ordering constraints for composite.
built 844 ordering constraints for composite.
built 2124 ordering constraints for composite.
built 1760 ordering constraints for composite.
built 900 ordering constraints for composite.
built 1252 ordering constraints for composite.
built 1900 ordering constraints for composite.
built 2180 ordering constraints for composite.
built 2176 ordering constraints for composite.
built 1632 ordering constraints for composite.
built 1516 ordering constraints for composite.
built 1000 ordering constraints for composite.

BK_STOP 1527271136535

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution UpperBounds -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination UpperBounds -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 25, 2018 5:31:53 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, UpperBounds, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 25, 2018 5:31:53 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 25, 2018 5:31:55 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 1249 ms
May 25, 2018 5:31:55 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 2702 places.
May 25, 2018 5:31:57 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 30977 transitions.
May 25, 2018 5:31:57 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 25, 2018 5:32:02 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 5340 ms
May 25, 2018 5:32:05 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 3048 ms
Begin: Fri May 25 17:32:10 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Fri May 25 17:32:10 2018
network size: 2702 nodes, 41778 links, 61952 weight
quality increased from -0.0978751 to 0.154834
end computation: Fri May 25 17:32:10 2018
level 1:
start computation: Fri May 25 17:32:10 2018
network size: 801 nodes, 8739 links, 61952 weight
quality increased from 0.154834 to 0.223155
end computation: Fri May 25 17:32:10 2018
level 2:
start computation: Fri May 25 17:32:10 2018
network size: 118 nodes, 912 links, 61952 weight
quality increased from 0.223155 to 0.243128
end computation: Fri May 25 17:32:10 2018
level 3:
start computation: Fri May 25 17:32:10 2018
network size: 30 nodes, 212 links, 61952 weight
quality increased from 0.243128 to 0.244177
end computation: Fri May 25 17:32:10 2018
level 4:
start computation: Fri May 25 17:32:10 2018
network size: 22 nodes, 148 links, 61952 weight
quality increased from 0.244177 to 0.244177
end computation: Fri May 25 17:32:10 2018
End: Fri May 25 17:32:10 2018
Total duration: 0 sec
0.244177
May 25, 2018 5:32:10 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 25, 2018 5:32:13 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 2782 ms
May 25, 2018 5:32:13 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 25, 2018 5:38:42 PM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 81359 redundant transitions.
May 25, 2018 5:38:43 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/UpperBounds.pnml.gal : 477 ms
May 25, 2018 5:38:43 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/UpperBounds.prop : 4 ms
ITS-tools command line returned an error code 137

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="PhaseVariation-PT-D30CS100"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/PhaseVariation-PT-D30CS100.tgz
mv PhaseVariation-PT-D30CS100 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is PhaseVariation-PT-D30CS100, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r117-csrt-152666477300660"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;