Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...................................................
/home/mcc/execution
total 30M
-rw-r--r-- 1 mcc users 4.4K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 4.8K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 22K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.6K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.9K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.8K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.3K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 117 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 355 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 4.5K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.9K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 4.0K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 9 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 30M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is PhaseVariation-PT-D30CS010, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r117-csrt-152666477300657
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME PhaseVariation-PT-D30CS010-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1527269348423

Flatten gal took : 4838 ms
Constant places removed 1 places and 36 transitions.
Iterating post reduction 0 with 1 rules applied. Total rules applied 1 place count 2701 transition count 30941
Constant places removed 2 places and 16 transitions.
Iterating post reduction 1 with 2 rules applied. Total rules applied 3 place count 2699 transition count 30925
Applied a total of 3 rules in 1319 ms. Remains 2699 /2702 variables (removed 3) and now considering 30925/30977 (removed 52) transitions.
Normalized transition count is 1799
// Phase 1: matrix 1799 rows 2699 cols
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph2321142938475805783.txt, -o, /tmp/graph2321142938475805783.bin, -w, /tmp/graph2321142938475805783.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph2321142938475805783.bin, -l, -1, -v, -w, /tmp/graph2321142938475805783.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution] killed by timeout after 400 SECONDS
No direction supplied, using forward translation only.
built 80 ordering constraints for composite.
built 1436 ordering constraints for composite.
built 980 ordering constraints for composite.
built 1616 ordering constraints for composite.
built 1756 ordering constraints for composite.
built 776 ordering constraints for composite.
built 1096 ordering constraints for composite.
built 1638 ordering constraints for composite.
built 600 ordering constraints for composite.
built 1872 ordering constraints for composite.
built 1596 ordering constraints for composite.
built 1340 ordering constraints for composite.
built 1128 ordering constraints for composite.
built 30924 ordering constraints for composite.
built 1524 ordering constraints for composite.
built 1340 ordering constraints for composite.
built 672 ordering constraints for composite.
built 876 ordering constraints for composite.
built 960 ordering constraints for composite.
built 856 ordering constraints for composite.
built 848 ordering constraints for composite.
built 2080 ordering constraints for composite.
built 1440 ordering constraints for composite.
built 1084 ordering constraints for composite.
built 1092 ordering constraints for composite.
built 1292 ordering constraints for composite.
built 2040 ordering constraints for composite.
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc

BK_STOP 1527270880657

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 25, 2018 5:29:11 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 25, 2018 5:29:11 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 25, 2018 5:29:12 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 1209 ms
May 25, 2018 5:29:12 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 2702 places.
May 25, 2018 5:29:14 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 30977 transitions.
May 25, 2018 5:29:19 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 4833 ms
May 25, 2018 5:29:19 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 270 ms
May 25, 2018 5:29:22 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 30977 transitions.
May 25, 2018 5:29:28 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 25, 2018 5:29:34 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 30925 transitions.
May 25, 2018 5:29:34 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (30925) to apply POR reductions. Disabling POR matrices.
May 25, 2018 5:29:36 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 7367 ms
May 25, 2018 5:29:37 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 8453ms conformant to PINS in folder :/home/mcc/execution
May 25, 2018 5:29:39 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 3279 ms
Begin: Fri May 25 17:29:42 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Fri May 25 17:29:42 2018
network size: 2699 nodes, 41698 links, 61848 weight
quality increased from -0.0978939 to 0.152546
end computation: Fri May 25 17:29:42 2018
level 1:
start computation: Fri May 25 17:29:42 2018
network size: 770 nodes, 8352 links, 61848 weight
quality increased from 0.152546 to 0.218329
end computation: Fri May 25 17:29:42 2018
level 2:
start computation: Fri May 25 17:29:42 2018
network size: 112 nodes, 872 links, 61848 weight
quality increased from 0.218329 to 0.235813
end computation: Fri May 25 17:29:42 2018
level 3:
start computation: Fri May 25 17:29:42 2018
network size: 32 nodes, 228 links, 61848 weight
quality increased from 0.235813 to 0.236388
end computation: Fri May 25 17:29:42 2018
level 4:
start computation: Fri May 25 17:29:42 2018
network size: 26 nodes, 184 links, 61848 weight
quality increased from 0.236388 to 0.236388
end computation: Fri May 25 17:29:42 2018
End: Fri May 25 17:29:42 2018
Total duration: 0 sec
0.236388
May 25, 2018 5:29:43 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 25, 2018 5:29:46 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 2934 ms
May 25, 2018 5:29:46 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 25, 2018 5:35:34 PM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 81007 redundant transitions.
May 25, 2018 5:35:34 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 422 ms
java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution] killed by timeout after 400 SECONDS
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:78)
at java.lang.Thread.run(Thread.java:748)
ITS-tools command line returned an error code 134

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="PhaseVariation-PT-D30CS010"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/PhaseVariation-PT-D30CS010.tgz
mv PhaseVariation-PT-D30CS010 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is PhaseVariation-PT-D30CS010, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r117-csrt-152666477300657"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;