Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...................
/home/mcc/execution
total 30M
-rw-r--r-- 1 mcc users 4.4K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 4.8K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 22K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.6K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.9K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.8K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.3K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 117 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 355 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 4.5K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.9K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 4.0K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 9 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 30M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is PhaseVariation-PT-D30CS010, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r117-csrt-152666477300653
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME PhaseVariation-PT-D30CS010-UpperBounds-00
FORMULA_NAME PhaseVariation-PT-D30CS010-UpperBounds-01
FORMULA_NAME PhaseVariation-PT-D30CS010-UpperBounds-02
FORMULA_NAME PhaseVariation-PT-D30CS010-UpperBounds-03
FORMULA_NAME PhaseVariation-PT-D30CS010-UpperBounds-04
FORMULA_NAME PhaseVariation-PT-D30CS010-UpperBounds-05
FORMULA_NAME PhaseVariation-PT-D30CS010-UpperBounds-06
FORMULA_NAME PhaseVariation-PT-D30CS010-UpperBounds-07
FORMULA_NAME PhaseVariation-PT-D30CS010-UpperBounds-08
FORMULA_NAME PhaseVariation-PT-D30CS010-UpperBounds-09
FORMULA_NAME PhaseVariation-PT-D30CS010-UpperBounds-10
FORMULA_NAME PhaseVariation-PT-D30CS010-UpperBounds-11
FORMULA_NAME PhaseVariation-PT-D30CS010-UpperBounds-12
FORMULA_NAME PhaseVariation-PT-D30CS010-UpperBounds-13
FORMULA_NAME PhaseVariation-PT-D30CS010-UpperBounds-14
FORMULA_NAME PhaseVariation-PT-D30CS010-UpperBounds-15

=== Now, execution of the tool begins

BK_START 1527268753679

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph990478394016075139.txt, -o, /tmp/graph990478394016075139.bin, -w, /tmp/graph990478394016075139.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph990478394016075139.bin, -l, -1, -v, -w, /tmp/graph990478394016075139.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/UpperBounds.pnml.gal, -t, CGAL, -reachable-file, UpperBounds.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/UpperBounds.pnml.gal -t CGAL -reachable-file UpperBounds.prop --nowitness
Loading property file UpperBounds.prop.
Read [bounds] property : PhaseVariation-PT-D30CS010-UpperBounds-00 with value :i2.u322.pool__17_16_
Read [bounds] property : PhaseVariation-PT-D30CS010-UpperBounds-01 with value :i18.u167.cell___8_22__A_
Read [bounds] property : PhaseVariation-PT-D30CS010-UpperBounds-02 with value :i22.u745.cell___6_2__A_
Read [bounds] property : PhaseVariation-PT-D30CS010-UpperBounds-03 with value :i14.u648.cell___4_30__B_
Read [bounds] property : PhaseVariation-PT-D30CS010-UpperBounds-04 with value :i22.u745.cell___3_19__A_
Read [bounds] property : PhaseVariation-PT-D30CS010-UpperBounds-05 with value :i3.u352.cell___18_5__B_
Read [bounds] property : PhaseVariation-PT-D30CS010-UpperBounds-06 with value :i16.u684.cell___6_6__A_
Read [bounds] property : PhaseVariation-PT-D30CS010-UpperBounds-07 with value :i22.u745.cell___24_4__A_
Read [bounds] property : PhaseVariation-PT-D30CS010-UpperBounds-08 with value :i18.u12.cell___11_22__A_
Read [bounds] property : PhaseVariation-PT-D30CS010-UpperBounds-09 with value :i22.u745.cell___18_11__B_
Read [bounds] property : PhaseVariation-PT-D30CS010-UpperBounds-10 with value :i3.u269.cell___14_4__B_
Read [bounds] property : PhaseVariation-PT-D30CS010-UpperBounds-11 with value :i1.u237.pool__13_17_
Read [bounds] property : PhaseVariation-PT-D30CS010-UpperBounds-12 with value :i6.u456.cell___23_10__A_
Read [bounds] property : PhaseVariation-PT-D30CS010-UpperBounds-13 with value :i8.u622.cell___3_23__B_
Read [bounds] property : PhaseVariation-PT-D30CS010-UpperBounds-14 with value :i19.u346.pool__18_24_
Read [bounds] property : PhaseVariation-PT-D30CS010-UpperBounds-15 with value :i15.u199.cell___11_14__B_
built 67 ordering constraints for composite.
built 1288 ordering constraints for composite.
built 1160 ordering constraints for composite.
built 1344 ordering constraints for composite.
built 1264 ordering constraints for composite.
built 1040 ordering constraints for composite.
built 2156 ordering constraints for composite.
built 1592 ordering constraints for composite.
built 1320 ordering constraints for composite.
built 1640 ordering constraints for composite.
built 632 ordering constraints for composite.
built 29556 ordering constraints for composite.
built 1936 ordering constraints for composite.
built 1128 ordering constraints for composite.
built 1440 ordering constraints for composite.
built 1920 ordering constraints for composite.
built 1456 ordering constraints for composite.
built 1804 ordering constraints for composite.
built 1360 ordering constraints for composite.
built 1012 ordering constraints for composite.
built 1832 ordering constraints for composite.
built 944 ordering constraints for composite.
built 1396 ordering constraints for composite.
built 1740 ordering constraints for composite.

BK_STOP 1527270528582

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution UpperBounds -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination UpperBounds -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 25, 2018 5:19:17 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, UpperBounds, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 25, 2018 5:19:17 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 25, 2018 5:19:18 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 1298 ms
May 25, 2018 5:19:19 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 2702 places.
May 25, 2018 5:19:20 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 30977 transitions.
May 25, 2018 5:19:20 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 25, 2018 5:19:26 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 6095 ms
May 25, 2018 5:19:29 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 3384 ms
Begin: Fri May 25 17:19:35 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Fri May 25 17:19:35 2018
network size: 2702 nodes, 41778 links, 61952 weight
quality increased from -0.0978751 to 0.156002
end computation: Fri May 25 17:19:35 2018
level 1:
start computation: Fri May 25 17:19:35 2018
network size: 746 nodes, 7088 links, 61952 weight
quality increased from 0.156002 to 0.216912
end computation: Fri May 25 17:19:35 2018
level 2:
start computation: Fri May 25 17:19:35 2018
network size: 109 nodes, 827 links, 61952 weight
quality increased from 0.216912 to 0.235014
end computation: Fri May 25 17:19:35 2018
level 3:
start computation: Fri May 25 17:19:35 2018
network size: 32 nodes, 224 links, 61952 weight
quality increased from 0.235014 to 0.235956
end computation: Fri May 25 17:19:35 2018
level 4:
start computation: Fri May 25 17:19:35 2018
network size: 24 nodes, 162 links, 61952 weight
quality increased from 0.235956 to 0.235967
end computation: Fri May 25 17:19:35 2018
level 5:
start computation: Fri May 25 17:19:35 2018
network size: 23 nodes, 155 links, 61952 weight
quality increased from 0.235967 to 0.235967
end computation: Fri May 25 17:19:35 2018
End: Fri May 25 17:19:35 2018
Total duration: 0 sec
0.235967
May 25, 2018 5:19:35 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 25, 2018 5:19:38 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 3035 ms
May 25, 2018 5:19:38 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 25, 2018 5:26:41 PM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 71939 redundant transitions.
May 25, 2018 5:26:42 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/UpperBounds.pnml.gal : 433 ms
May 25, 2018 5:26:42 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/UpperBounds.prop : 2 ms
ITS-tools command line returned an error code 137

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="PhaseVariation-PT-D30CS010"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/PhaseVariation-PT-D30CS010.tgz
mv PhaseVariation-PT-D30CS010 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is PhaseVariation-PT-D30CS010, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r117-csrt-152666477300653"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;