Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
....................................................................
/home/mcc/execution
total 2.2M
-rw-r--r-- 1 mcc users 90K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 242K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 63K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 204K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 32K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 86K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 22K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 69K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 34K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 97K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 104 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 342 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 69K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 230K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 9.5K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 21K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 2 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 911K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is Peterson-PT-5, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r117-csrt-152666477200578
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Peterson-PT-5-CTLFireability-00
FORMULA_NAME Peterson-PT-5-CTLFireability-01
FORMULA_NAME Peterson-PT-5-CTLFireability-02
FORMULA_NAME Peterson-PT-5-CTLFireability-03
FORMULA_NAME Peterson-PT-5-CTLFireability-04
FORMULA_NAME Peterson-PT-5-CTLFireability-05
FORMULA_NAME Peterson-PT-5-CTLFireability-06
FORMULA_NAME Peterson-PT-5-CTLFireability-07
FORMULA_NAME Peterson-PT-5-CTLFireability-08
FORMULA_NAME Peterson-PT-5-CTLFireability-09
FORMULA_NAME Peterson-PT-5-CTLFireability-10
FORMULA_NAME Peterson-PT-5-CTLFireability-11
FORMULA_NAME Peterson-PT-5-CTLFireability-12
FORMULA_NAME Peterson-PT-5-CTLFireability-13
FORMULA_NAME Peterson-PT-5-CTLFireability-14
FORMULA_NAME Peterson-PT-5-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1527264187147

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph8939901378944633758.txt, -o, /tmp/graph8939901378944633758.bin, -w, /tmp/graph8939901378944633758.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph8939901378944633758.bin, -l, -1, -v, -w, /tmp/graph8939901378944633758.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
built 236 ordering constraints for composite.
built 13 ordering constraints for composite.
built 6 ordering constraints for composite.
built 10 ordering constraints for composite.
built 10 ordering constraints for composite.
built 8 ordering constraints for composite.
built 10 ordering constraints for composite.
built 141 ordering constraints for composite.
built 40 ordering constraints for composite.
built 181 ordering constraints for composite.
built 10 ordering constraints for composite.
built 10 ordering constraints for composite.
built 10 ordering constraints for composite.
built 13 ordering constraints for composite.
built 185 ordering constraints for composite.
built 10 ordering constraints for composite.
built 8 ordering constraints for composite.
built 70 ordering constraints for composite.
built 10 ordering constraints for composite.
built 7 ordering constraints for composite.
built 35 ordering constraints for composite.
built 9 ordering constraints for composite.
built 10 ordering constraints for composite.
built 119 ordering constraints for composite.
built 9 ordering constraints for composite.
built 10 ordering constraints for composite.
built 36 ordering constraints for composite.
built 62 ordering constraints for composite.
built 13 ordering constraints for composite.
built 64 ordering constraints for composite.
built 34 ordering constraints for composite.
built 34 ordering constraints for composite.
built 10 ordering constraints for composite.
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc

BK_STOP 1527264875876

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 25, 2018 4:03:09 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 25, 2018 4:03:09 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 25, 2018 4:03:10 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 253 ms
May 25, 2018 4:03:10 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 834 places.
May 25, 2018 4:03:10 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 1242 transitions.
May 25, 2018 4:03:10 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 51 ms
May 25, 2018 4:03:10 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 25, 2018 4:03:11 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 279 ms
May 25, 2018 4:03:11 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 184 ms
Begin: Fri May 25 16:03:11 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Fri May 25 16:03:12 2018
network size: 834 nodes, 3522 links, 2484 weight
quality increased from -0.00211158 to 0.555296
end computation: Fri May 25 16:03:12 2018
level 1:
start computation: Fri May 25 16:03:12 2018
network size: 219 nodes, 1637 links, 2484 weight
quality increased from 0.555296 to 0.718463
end computation: Fri May 25 16:03:12 2018
level 2:
start computation: Fri May 25 16:03:12 2018
network size: 60 nodes, 550 links, 2484 weight
quality increased from 0.718463 to 0.726872
end computation: Fri May 25 16:03:12 2018
level 3:
start computation: Fri May 25 16:03:12 2018
network size: 32 nodes, 344 links, 2484 weight
quality increased from 0.726872 to 0.728482
end computation: Fri May 25 16:03:12 2018
End: Fri May 25 16:03:12 2018
Total duration: 1 sec
0.728482
May 25, 2018 4:03:12 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 25, 2018 4:03:12 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 143 ms
May 25, 2018 4:03:12 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 25, 2018 4:03:12 PM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 1032 redundant transitions.
May 25, 2018 4:03:12 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 30 ms
May 25, 2018 4:03:12 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 48 ms
ITS-tools command line returned an error code 134

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Peterson-PT-5"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Peterson-PT-5.tgz
mv Peterson-PT-5 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is Peterson-PT-5, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r117-csrt-152666477200578"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;