Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..................
/home/mcc/execution
total 3.0M
-rw-r--r-- 1 mcc users 4.7K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 22K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.5K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.9K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.2K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 13K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.0K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.1K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 118 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 356 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 4.6K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 21K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 2.0K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 4.0K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 10 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rwxr-xr-x 1 mcc users 2.8M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is HypertorusGrid-PT-d4k3p2b08, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r105-smll-152658635300160
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME HypertorusGrid-PT-d4k3p2b08-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1527384743442

Flatten gal took : 1261 ms
Applied a total of 0 rules in 504 ms. Remains 2025 /2025 variables (removed 0) and now considering 5184/5184 (removed 0) transitions.
// Phase 1: matrix 5184 rows 2025 cols
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph5743156186327275195.txt, -o, /tmp/graph5743156186327275195.bin, -w, /tmp/graph5743156186327275195.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph5743156186327275195.bin, -l, -1, -v, -w, /tmp/graph5743156186327275195.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
built 405 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
Compilation finished in 77931 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 102 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 27, 2018 1:32:25 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 27, 2018 1:32:25 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 27, 2018 1:32:26 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 391 ms
May 27, 2018 1:32:26 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 2025 places.
May 27, 2018 1:32:26 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 5184 transitions.
May 27, 2018 1:32:27 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 1255 ms
May 27, 2018 1:32:28 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 119 ms
May 27, 2018 1:32:28 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 5184 transitions.
May 27, 2018 1:32:36 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 27, 2018 1:32:37 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 5184 transitions.
May 27, 2018 1:32:37 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (5184) to apply POR reductions. Disabling POR matrices.
May 27, 2018 1:32:37 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 1022 ms
May 27, 2018 1:32:37 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 1239ms conformant to PINS in folder :/home/mcc/execution
May 27, 2018 1:32:37 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 564 ms
Begin: Sun May 27 01:32:38 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Sun May 27 01:32:38 2018
network size: 2025 nodes, 15552 links, 10368 weight
quality increased from -0.00106096 to 0.496528
end computation: Sun May 27 01:32:38 2018
level 1:
start computation: Sun May 27 01:32:38 2018
network size: 729 nodes, 3321 links, 10368 weight
quality increased from 0.496528 to 0.925154
end computation: Sun May 27 01:32:38 2018
level 2:
start computation: Sun May 27 01:32:38 2018
network size: 81 nodes, 729 links, 10368 weight
quality increased from 0.925154 to 0.925154
end computation: Sun May 27 01:32:38 2018
End: Sun May 27 01:32:38 2018
Total duration: 0 sec
0.925154
May 27, 2018 1:32:38 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 27, 2018 1:32:39 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 473 ms
May 27, 2018 1:32:39 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 27, 2018 1:32:41 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 7776 redundant transitions.
May 27, 2018 1:32:41 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 70 ms
ITS-tools command line returned an error code 134

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="HypertorusGrid-PT-d4k3p2b08"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/HypertorusGrid-PT-d4k3p2b08.tgz
mv HypertorusGrid-PT-d4k3p2b08 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is HypertorusGrid-PT-d4k3p2b08, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r105-smll-152658635300160"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;