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Model Checking Contest 2018
8th edition, Bratislava, Slovakia, June 26, 2018
Execution of r094-blw7-152650006400336
Last Updated
June 26, 2018

About the Execution of M4M.full for GPPP-PT-C0100N0000100000

Execution Summary
Max Memory
Used (MB)		 Time wait (ms) CPU Usage (ms) I/O Wait (ms) Computed Result Execution
Status
15919.380 591690.00 1102550.00 10786.80 ???????????????? normal

Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.................
/home/mcc/execution
total 192K
-rw-r--r-- 1 mcc users 3.5K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.2K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.7K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.5K May 26 09:26 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 26 09:26 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K May 26 09:26 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.0K May 26 09:26 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 115 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 353 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.6K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 17 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 21K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool mcc4mcc-full
Input is GPPP-PT-C0100N0000100000, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r094-blw7-152650006400336
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-00
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-01
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-02
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-03
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-04
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-05
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-06
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-07
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-08
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-09
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-10
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-11
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-12
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-13
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-14
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-15

=== Now, execution of the tool begins

BK_START 1527537084943


BK_STOP 1527537676633

--------------------
content from stderr:

Prefix is 65b80f64.
Reading known information in /usr/share/mcc4mcc/65b80f64-known.json.
Reading learned information in /usr/share/mcc4mcc/65b80f64-learned.json.
Reading value translations in /usr/share/mcc4mcc/65b80f64-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using GPPP-PT-C0100N0000100000 as instance name.
Using GPPP as model name.
Using algorithm or tool decision-tree.
Model characteristics are: {'Examination': 'ReachabilityFireability', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': False, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': True, 'Source Place': False, 'Sink Place': False, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': True, 'Conservative': False, 'Sub-Conservative': False, 'Nested Units': False, 'Safe': False, 'Deadlock': None, 'Reversible': None, 'Quasi Live': True, 'Live': None}.
Known tools are: [{'Time': 305959, 'Memory': 15952.4, 'Tool': 'lola'}, {'Time': 331578, 'Memory': 15949.29, 'Tool': 'lola'}].
Learned tools are: [{'Tool': 'lola'}].
Learned tool lola is 1.0x far from the best tool lola.
ReachabilityFireability lola GPPP-PT-C0100N0000100000...

Time: 3600 - MCC
----- Start make prepare stdout -----
----- Start make prepare stderr -----
===========================================================================================
GPPP-PT-C0100N0000100000: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete


checking for too many tokens
===========================================================================================
GPPP-PT-C0100N0000100000: translating PT formula ReachabilityFireability into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stderr -----
----- Start make result stdout -----
ReachabilityFireability @ GPPP-PT-C0100N0000100000 @ 3540 seconds
make: [verify] Error 134 (ignored)
----- Start make result stderr -----
----- Kill lola and sara stderr -----
Makefile:222: recipe for target 'verify' failed
----- Start make result stdout -----
lola: LoLA will run for 3540 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 55/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 33 places, 22 transitions, 21 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 30 transition conflict sets
lola: TASK
lola: reading formula from GPPP-PT-C0100N0000100000-ReachabilityFireability.task
lola: E (F ((FIREABLE(Phosphoglucose_isomerase) AND FIREABLE(TIM_forward) AND FIREABLE(Pyruvate_kinase) AND (FIREABLE(Enolase) OR FIREABLE(GAP_dehydrogenase))))) : E (F (((NOT FIREABLE(Ru5P_isomerase) OR NOT FIREABLE(Ru5P_epimerase)) AND FIREABLE(Pyruvate_kinase) AND FIREABLE(Glutathione_reductose)))) : E (F (((FIREABLE(TIM_forward)) AND FIREABLE(G6P_dehydrogenase) AND FIREABLE(Pyruvate_kinase) AND (FIREABLE(Ru5P_isomerase) OR FIREABLE(Lactate_dehydrogenase)) AND ((FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(Glutathione_oxidation)) OR NOT FIREABLE(Enolase) OR (FIREABLE(TIM_backward) AND FIREABLE(Enolase) AND (FIREABLE(remove) OR FIREABLE(Phosphoglycerate_kinase))))))) : E (F ((NOT FIREABLE(GAP_dehydrogenase) AND NOT FIREABLE(Transaldolase) AND (NOT FIREABLE(Enolase) OR NOT FIREABLE(Transaldolase)) AND FIREABLE(Pyruvate_kinase)))) : E (F ((FIREABLE(Transaldolase) AND FIREABLE(Ru5P_isomerase) AND FIREABLE(generate) AND NOT FIREABLE(remove) AND NOT FIREABLE(Phosphoglycerate_mutase) AND FIREABLE(Enolase) AND (FIREABLE(Phosphoglucose_isomerase) OR FIREABLE(Aldolase) OR FIREABLE(Ru5P_epimerase))))) : E (F ((FIREABLE(Lactate_dehydrogenase) AND FIREABLE(Transketolase2)))) : A (G ((FIREABLE(Aldolase) OR FIREABLE(Transketolase2) OR NOT FIREABLE(Lactate_dehydrogenase)))) : A (G ((NOT FIREABLE(Pyruvate_kinase) OR NOT FIREABLE(Hexokinase) OR FIREABLE(Glutathione_oxidation) OR (NOT FIREABLE(Glutathione_oxidation) AND FIREABLE(Hexokinase))))) : A (G ((NOT FIREABLE(Ru5P_isomerase) OR NOT FIREABLE(Transaldolase)))) : E (F (FIREABLE(remove))) : E (F (FIREABLE(remove))) : E (F (((NOT FIREABLE(G6P_dehydrogenase)) AND FIREABLE(Lactate_dehydrogenase) AND ((FIREABLE(Transketolase2)) OR FIREABLE(generate)) AND (NOT FIREABLE(G6P_dehydrogenase) OR NOT FIREABLE(Transketolase1))))) : E (F ((FIREABLE(Phosphoglycerate_mutase) AND FIREABLE(Aldolase) AND NOT FIREABLE(generate) AND (FIREABLE(Glutathione_reductose) OR (FIREABLE(Glutathione_oxidation) AND FIREABLE(generate))) AND (FIREABLE(Phosphoglycerate_mutase) OR (FIREABLE(GAP_dehydrogenase) AND FIREABLE(Aldolase)))))) : E (F (FIREABLE(Lactate_dehydrogenase))) : E (F (((NOT FIREABLE(Phosphoglycerate_kinase) OR NOT FIREABLE(Aldolase)) AND NOT FIREABLE(remove) AND FIREABLE(Lactate_dehydrogenase) AND NOT FIREABLE(Phosphofructokinase)))) : A (G ((NOT FIREABLE(TIM_backward) OR NOT FIREABLE(Transketolase2))))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Phosphoglucose_isomerase) AND FIREABLE(TIM_forward) AND FIREABLE(Pyruvate_kinase) AND (FIREABLE(Enolase) OR FIREABLE(GAP_dehydrogenase)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 15 literals and 2 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 625 markings, 627 edges
lola: ========================================
lola: subprocess 1 will run for 236 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (((NOT FIREABLE(Ru5P_isomerase) OR NOT FIREABLE(Ru5P_epimerase)) AND FIREABLE(Pyruvate_kinase) AND FIREABLE(Glutathione_reductose))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 20 literals and 4 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability.sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 18 markings, 17 edges
lola: ========================================
lola: subprocess 2 will run for 252 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (((FIREABLE(TIM_forward)) AND FIREABLE(G6P_dehydrogenase) AND FIREABLE(Pyruvate_kinase) AND (FIREABLE(Ru5P_isomerase) OR FIREABLE(Lactate_dehydrogenase)) AND ((FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(Glutathione_oxidation)) OR NOT FIREABLE(Enolase) OR (FIREABLE(TIM_backward) AND FIREABLE(Enolase) AND (FIREABLE(remove) OR FIREABLE(Phosphoglycerate_kinase)))))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 88 literals and 8 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-2.sara
lola: state equation: calling and running sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 618 markings, 617 edges
lola: ========================================
lola: subprocess 3 will run for 272 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((NOT FIREABLE(GAP_dehydrogenase) AND NOT FIREABLE(Transaldolase) AND (NOT FIREABLE(Enolase) OR NOT FIREABLE(Transaldolase)) AND FIREABLE(Pyruvate_kinase))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 23 markings, 24 edges
lola: state equation: Generated DNF with 240 literals and 48 conjunctive subformulas
lola: ========================================
lola: subprocess 4 will run for 295 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Transaldolase) AND FIREABLE(Ru5P_isomerase) AND FIREABLE(generate) AND NOT FIREABLE(remove) AND NOT FIREABLE(Phosphoglycerate_mutase) AND FIREABLE(Enolase) AND (FIREABLE(Phosphoglucose_isomerase) OR FIREABLE(Aldolase) OR FIREABLE(Ru5P_epimerase)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 64 literals and 6 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-4.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000100000-ReachabilityFireability-4.sara.
sara: place or transition ordering is non-deterministic
lola: sara is running 0 secs || 3400957 markings, 8462652 edges, 680191 markings/sec, 0 secs
lola: sara is running 5 secs || 6714572 markings, 16634525 edges, 662723 markings/sec, 5 secs
lola: sara is running 10 secs || 9921308 markings, 24512879 edges, 641347 markings/sec, 10 secs
lola: sara is running 15 secs || 13070330 markings, 32221107 edges, 629804 markings/sec, 15 secs
lola: sara is running 20 secs || 16164060 markings, 39802463 edges, 618746 markings/sec, 20 secs
lola: sara is running 25 secs || 19203767 markings, 47226895 edges, 607941 markings/sec, 25 secs
lola: sara is running 30 secs || 22366899 markings, 54951435 edges, 632626 markings/sec, 30 secs
lola: sara is running 35 secs || 25442241 markings, 62455093 edges, 615068 markings/sec, 35 secs
lola: sara is running 40 secs || 28429398 markings, 69718235 edges, 597431 markings/sec, 40 secs
lola: sara is running 45 secs || 31414364 markings, 77001697 edges, 596993 markings/sec, 45 secs
lola: sara is running 50 secs || 34416481 markings, 84319318 edges, 600423 markings/sec, 50 secs
lola: sara is running 55 secs || 37366068 markings, 91486745 edges, 589917 markings/sec, 55 secs
lola: sara is running 60 secs || 40262101 markings, 98515052 edges, 579207 markings/sec, 60 secs
lola: sara is running 65 secs || 43167720 markings, 105597974 edges, 581124 markings/sec, 65 secs
lola: sara is running 70 secs || 46029189 markings, 112541218 edges, 572294 markings/sec, 70 secs
lola: sara is running 75 secs || 48869932 markings, 119451418 edges, 568149 markings/sec, 75 secs
lola: sara is running 80 secs || 51858194 markings, 126707912 edges, 597652 markings/sec, 80 secs
lola: sara is running 85 secs || 54741080 markings, 133697448 edges, 576577 markings/sec, 85 secs
lola: sara is running 90 secs || 57597577 markings, 140626627 edges, 571299 markings/sec, 90 secs
lola: sara is running 95 secs || 60461438 markings, 147575857 edges, 572772 markings/sec, 95 secs
lola: sara is running 100 secs || 63310149 markings, 154491301 edges, 569742 markings/sec, 100 secs
lola: sara is running 105 secs || 66142197 markings, 161369744 edges, 566410 markings/sec, 105 secs
lola: sara is running 110 secs || 68899366 markings, 168064083 edges, 551434 markings/sec, 110 secs
lola: sara is running 115 secs || 71639177 markings, 174702512 edges, 547962 markings/sec, 115 secs
lola: sara is running 120 secs || 74528958 markings, 181694819 edges, 577956 markings/sec, 120 secs
lola: sara is running 125 secs || 77307862 markings, 188448160 edges, 555781 markings/sec, 125 secs
lola: sara is running 130 secs || 80045355 markings, 195066049 edges, 547499 markings/sec, 130 secs
lola: sara is running 135 secs || 82861604 markings, 201893203 edges, 563250 markings/sec, 135 secs
lola: sara is running 140 secs || 85592134 markings, 208523485 edges, 546106 markings/sec, 140 secs
lola: sara is running 145 secs || 88376468 markings, 215252115 edges, 556867 markings/sec, 145 secs
lola: sara is running 150 secs || 91032719 markings, 221698853 edges, 531250 markings/sec, 150 secs
lola: sara is running 155 secs || 93857197 markings, 228533501 edges, 564896 markings/sec, 155 secs
lola: sara is running 160 secs || 96529466 markings, 234997414 edges, 534454 markings/sec, 160 secs
lola: sara is running 165 secs || 99121595 markings, 241279945 edges, 518426 markings/sec, 165 secs
lola: sara is running 170 secs || 102071891 markings, 248411777 edges, 590059 markings/sec, 170 secs
lola: sara is running 175 secs || 105007327 markings, 255531502 edges, 587087 markings/sec, 175 secs
lola: sara is running 180 secs || 107897037 markings, 262525667 edges, 577942 markings/sec, 180 secs
lola: sara is running 185 secs || 110739756 markings, 269379921 edges, 568544 markings/sec, 185 secs
lola: sara is running 190 secs || 113565568 markings, 276241237 edges, 565162 markings/sec, 190 secs
lola: sara is running 195 secs || 116319583 markings, 282915162 edges, 550803 markings/sec, 195 secs
lola: sara is running 200 secs || 119172167 markings, 289797166 edges, 570517 markings/sec, 200 secs
lola: sara is running 205 secs || 121985298 markings, 296589551 edges, 562626 markings/sec, 205 secs
lola: sara is running 210 secs || 124671592 markings, 303085700 edges, 537259 markings/sec, 210 secs
lola: sara is running 215 secs || 127500614 markings, 309955338 edges, 565804 markings/sec, 215 secs
lola: sara is running 220 secs || 130259431 markings, 316631405 edges, 551763 markings/sec, 220 secs
lola: sara is running 225 secs || 133058545 markings, 323390385 edges, 559823 markings/sec, 225 secs
lola: sara is running 230 secs || 135725122 markings, 329827962 edges, 533315 markings/sec, 230 secs
lola: sara is running 235 secs || 138573417 markings, 336703119 edges, 569659 markings/sec, 235 secs
lola: sara is running 240 secs || 141423072 markings, 343590284 edges, 569931 markings/sec, 240 secs
lola: sara is running 245 secs || 144104189 markings, 350064341 edges, 536223 markings/sec, 245 secs
lola: sara is running 250 secs || 146901517 markings, 356845354 edges, 559466 markings/sec, 250 secs
lola: sara is running 255 secs || 149606960 markings, 363368929 edges, 541089 markings/sec, 255 secs
lola: sara is running 260 secs || 152413923 markings, 370175086 edges, 561393 markings/sec, 260 secs
lola: sara is running 265 secs || 155025374 markings, 376461783 edges, 522290 markings/sec, 265 secs
lola: sara is running 270 secs || 157826607 markings, 383254848 edges, 560247 markings/sec, 270 secs
lola: sara is running 275 secs || 160509854 markings, 389713732 edges, 536649 markings/sec, 275 secs
lola: sara is running 280 secs || 163316798 markings, 396518848 edges, 561389 markings/sec, 280 secs
lola: sara is running 285 secs || 165910072 markings, 402760712 edges, 518655 markings/sec, 285 secs
lola: local time limit reached - aborting
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 5 will run for 295 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Lactate_dehydrogenase) AND FIREABLE(Transketolase2))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 4 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-5.sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 22 markings, 21 edges
lola: ========================================
lola: subprocess 6 will run for 324 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((FIREABLE(Aldolase) OR FIREABLE(Transketolase2) OR NOT FIREABLE(Lactate_dehydrogenase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 8 literals and 2 conjunctive subformulas
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 19 markings, 18 edges
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-6.sara
lola: ========================================
lola: subprocess 7 will run for 360 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(Pyruvate_kinase) OR NOT FIREABLE(Hexokinase) OR FIREABLE(Glutathione_oxidation) OR (NOT FIREABLE(Glutathione_oxidation) AND FIREABLE(Hexokinase)))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 6 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-7.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000100000-ReachabilityFireability-7.sara.
sara: place or transition ordering is non-deterministic

lola: state equation: solution impossible
lola: SUBRESULT
lola: result: yes
lola: produced by: state equation
lola: The predicate is invariant.
lola: ========================================
lola: subprocess 8 will run for 405 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(Ru5P_isomerase) OR NOT FIREABLE(Transaldolase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 5 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-8.sara
lola: state equation: calling and running sara
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 612 markings, 611 edges
lola: ========================================
lola: subprocess 9 will run for 463 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(remove)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 2 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-9.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000100000-ReachabilityFireability-9.sara.
sara: place or transition ordering is non-deterministic

lola: state equation: solution impossible
lola: SUBRESULT
lola: result: no
lola: produced by: state equation
lola: The predicate is unreachable.
lola: ========================================
lola: subprocess 10 will run for 540 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(remove)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 2 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-10.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000100000-ReachabilityFireability-10.sara.
sara: place or transition ordering is non-deterministic

lola: state equation: solution impossible
lola: SUBRESULT
lola: result: no
lola: produced by: state equation
lola: The predicate is unreachable.
lola: ========================================
lola: subprocess 11 will run for 648 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (((NOT FIREABLE(G6P_dehydrogenase)) AND FIREABLE(Lactate_dehydrogenase) AND ((FIREABLE(Transketolase2)) OR FIREABLE(generate)) AND (NOT FIREABLE(G6P_dehydrogenase) OR NOT FIREABLE(Transketolase1)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 147 literals and 27 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-11.sara
----- Finished stderr -----
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000100000-ReachabilityFireability-11.sara.
sara: place or transition ordering is non-deterministic
lola: sara is running 0 secs || 4676829 markings, 8387711 edges, 935366 markings/sec, 0 secs
lola: sara is running 5 secs || 9219405 markings, 16725442 edges, 908515 markings/sec, 5 secs
lola: sara is running 10 secs || 14227914 markings, 25776673 edges, 1001702 markings/sec, 10 secs
lola: sara is running 15 secs || 19215019 markings, 34749684 edges, 997421 markings/sec, 15 secs
lola: sara is running 20 secs || 22907279 markings, 42392705 edges, 738452 markings/sec, 20 secs
lola: sara is running 25 secs || 26746030 markings, 49807929 edges, 767750 markings/sec, 25 secs
lola: sara is running 30 secs || 30566505 markings, 57270094 edges, 764095 markings/sec, 30 secs
lola: sara is running 35 secs || 34848021 markings, 65711367 edges, 856303 markings/sec, 35 secs
lola: sara is running 40 secs || 39828860 markings, 74663217 edges, 996168 markings/sec, 40 secs
lola: sara is running 45 secs || 44758004 markings, 83483664 edges, 985829 markings/sec, 45 secs
lola: sara is running 50 secs || 49645596 markings, 92200220 edges, 977518 markings/sec, 50 secs
lola: sara is running 55 secs || 54474968 markings, 100785661 edges, 965874 markings/sec, 55 secs
lola: sara is running 60 secs || 58784396 markings, 109131911 edges, 861886 markings/sec, 60 secs
lola: sara is running 65 secs || 62287232 markings, 116702737 edges, 700567 markings/sec, 65 secs
lola: sara is running 70 secs || 65941531 markings, 124120587 edges, 730860 markings/sec, 70 secs
lola: sara is running 75 secs || 69844205 markings, 131591976 edges, 780535 markings/sec, 75 secs
lola: sara is running 80 secs || 73434100 markings, 138997620 edges, 717979 markings/sec, 80 secs
lola: sara is running 85 secs || 77014185 markings, 145982617 edges, 716017 markings/sec, 85 secs
lola: sara is running 90 secs || 80958083 markings, 153602457 edges, 788780 markings/sec, 90 secs
lola: sara is running 95 secs || 84688212 markings, 160671676 edges, 746026 markings/sec, 95 secs
lola: sara is running 100 secs || 88093043 markings, 168233474 edges, 680966 markings/sec, 100 secs
lola: sara is running 105 secs || 91504071 markings, 175570516 edges, 682206 markings/sec, 105 secs
lola: sara is running 110 secs || 95130764 markings, 182961893 edges, 725339 markings/sec, 110 secs
lola: sara is running 115 secs || 98783149 markings, 190125539 edges, 730477 markings/sec, 115 secs
lola: sara is running 120 secs || 102610143 markings, 197474650 edges, 765399 markings/sec, 120 secs
lola: sara is running 125 secs || 106551726 markings, 203829818 edges, 788317 markings/sec, 125 secs
lola: sara is running 130 secs || 110725758 markings, 208352347 edges, 834806 markings/sec, 130 secs
lola: sara is running 135 secs || 114475521 markings, 212551688 edges, 749953 markings/sec, 135 secs
lola: sara is running 140 secs || 119083389 markings, 217765150 edges, 921574 markings/sec, 140 secs
lola: sara is running 145 secs || 123850591 markings, 222883744 edges, 953440 markings/sec, 145 secs
lola: sara is running 150 secs || 127382915 markings, 227007976 edges, 706465 markings/sec, 150 secs
lola: sara is running 155 secs || 130719573 markings, 231109070 edges, 667332 markings/sec, 155 secs
lola: sara is running 160 secs || 134116640 markings, 234926048 edges, 679413 markings/sec, 160 secs
lola: sara is running 165 secs || 137699014 markings, 239361908 edges, 716475 markings/sec, 165 secs
lola: sara is running 170 secs || 141436909 markings, 243563587 edges, 747579 markings/sec, 170 secs
lola: sara is running 175 secs || 144720434 markings, 247415075 edges, 656705 markings/sec, 175 secs
lola: sara is running 180 secs || 147956296 markings, 251371498 edges, 647172 markings/sec, 180 secs
lola: sara is running 185 secs || 151023685 markings, 255051626 edges, 613478 markings/sec, 185 secs
lola: sara is running 190 secs || 154153323 markings, 258945492 edges, 625928 markings/sec, 190 secs
lola: sara is running 195 secs || 157538111 markings, 262746815 edges, 676958 markings/sec, 195 secs
lola: sara is running 200 secs || 161044908 markings, 267092426 edges, 701359 markings/sec, 200 secs
lola: sara is running 205 secs || 164749222 markings, 271237824 edges, 740863 markings/sec, 205 secs
lola: sara is running 210 secs || 167941462 markings, 274947119 edges, 638448 markings/sec, 210 secs
lola: sara is running 215 secs || 171064340 markings, 279038407 edges, 624576 markings/sec, 215 secs
lola: sara is running 220 secs || 174013790 markings, 282554851 edges, 589890 markings/sec, 220 secs
lola: sara is running 225 secs || 176134313 markings, 285372224 edges, 424105 markings/sec, 225 secs
lola: sara is running 230 secs || 176153043 markings, 285393579 edges, 3746 markings/sec, 230 secs
lola: sara is running 235 secs || 176165304 markings, 285407921 edges, 2452 markings/sec, 235 secs
lola: sara is running 240 secs || 176165333 markings, 285407950 edges, 6 markings/sec, 240 secs
lola: sara is running 245 secs || 176165358 markings, 285407979 edges, 5 markings/sec, 245 secs
lola: sara is running 250 secs || 176165402 markings, 285408029 edges, 9 markings/sec, 250 secs
lola: sara is running 255 secs || 176170076 markings, 285413072 edges, 935 markings/sec, 255 secs
lola: sara is running 260 secs || 176173496 markings, 285416708 edges, 684 markings/sec, 260 secs
lola: sara is running 265 secs || 176188939 markings, 285434502 edges, 3089 markings/sec, 265 secs
lola: Child process aborted or communication problem between parent and child process
terminate called after throwing an instance of 'std::runtime_error'
what(): parse error at position 0: unexpected character, last read: '`'
Aborted (core dumped)
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-0 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-1 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-2 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-3 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-4 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-5 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-6 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-7 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-8 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-9 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-10 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-11 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-12 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-13 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-14 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-15 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stdout -----
----- Finished stdout -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0100N0000100000"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="mcc4mcc-full"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0100N0000100000.tgz
mv GPPP-PT-C0100N0000100000 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool mcc4mcc-full"
echo " Input is GPPP-PT-C0100N0000100000, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r094-blw7-152650006400336"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;