Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
....................................................................................
/home/mcc/execution
total 184K
-rw-r--r-- 1 mcc users 4.1K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 26K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.5K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 16K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.7K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.2K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 9.3K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.9K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.5K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 2.9K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 14K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 110 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 348 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 15K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.6K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.7K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 4 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 14K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is Eratosthenes-PT-020, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r093-blw7-152650005200013
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Eratosthenes-PT-020-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1527353441231

Flatten gal took : 40 ms
Reduce isomorphic transitions removed 7 transitions.
Iterating post reduction 0 with 7 rules applied. Total rules applied 7 place count 11 transition count 20
Constant places removed 2 places and 2 transitions.
Iterating post reduction 1 with 2 rules applied. Total rules applied 9 place count 9 transition count 18
Applied a total of 9 rules in 5 ms. Remains 9 /11 variables (removed 2) and now considering 18/27 (removed 9) transitions.
Normalized transition count is 9
// Phase 1: matrix 9 rows 9 cols
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph2566541032914310671.txt, -o, /tmp/graph2566541032914310671.bin, -w, /tmp/graph2566541032914310671.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph2566541032914310671.bin, -l, -1, -v, -w, /tmp/graph2566541032914310671.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.
Normalized transition count is 9
// Phase 1: matrix 9 rows 9 cols

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,512,0.009533,4308,2,10,5,90,6,0,39,67,0


Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
dead,1,0.010458,4308,2,10,7,147,9,1,147,98,2

System contains 1 deadlocks (shown below if less than --print-limit option) !
FORMULA Eratosthenes-PT-020-ReachabilityDeadlock-0 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
[ ]
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
WARNING : LTS min runner thread was asked to interrupt. Dying gracefully.

BK_STOP 1527353443634

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 26, 2018 4:50:42 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 26, 2018 4:50:42 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 26, 2018 4:50:42 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 26 ms
May 26, 2018 4:50:42 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 19 places.
May 26, 2018 4:50:43 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 27 transitions.
May 26, 2018 4:50:43 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 6 ms
May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.DomainAnalyzer computeVariableDomains
INFO: Found a total of 4 fixed domain variables (out of 19 variables) in GAL type Eratosthenes_PT_020
May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: Found a total of 4 constant array cells/variables (out of 19 variables) in type Eratosthenes_PT_020
May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: p19,p11,p13,p17,
May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.DomainAnalyzer computeVariableDomains
INFO: Found a total of 8 fixed domain variables (out of 19 variables) in GAL type Eratosthenes_PT_020
May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: Found a total of 8 constant array cells/variables (out of 19 variables) in type Eratosthenes_PT_020
May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: p19,p11,p5,p13,p2,p17,p7,p3,
May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Removed 8 constant variables :p19=1, p11=1, p5=1, p13=1, p2=1, p17=1, p7=1, p3=1
May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Simplified 18 expressions due to constant valuations.
May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 36 ms
May 26, 2018 4:50:43 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 1 ms
May 26, 2018 4:50:43 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 27 transitions.
May 26, 2018 4:50:43 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 4 ms
May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 3 ms
May 26, 2018 4:50:43 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 18 transitions.
Begin: Sat May 26 16:50:43 2018
May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 3 ms
May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.CompositeBuilder$Partition getIndex
INFO: Could not find partition element corresponding to p6 in partition

May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.CompositeBuilder$Partition getIndex
INFO: Could not find partition element corresponding to p4 in partition

May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.CompositeBuilder$Partition getIndex
INFO: Could not find partition element corresponding to p8 in partition

May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.CompositeBuilder$Partition getIndex
INFO: Could not find partition element corresponding to p9 in partition

May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.CompositeBuilder$Partition getIndex
INFO: Could not find partition element corresponding to p10 in partition

May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.CompositeBuilder$Partition getIndex
INFO: Could not find partition element corresponding to p12 in partition

May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.CompositeBuilder$Partition getIndex
INFO: Could not find partition element corresponding to p16 in partition

May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.CompositeBuilder$Partition getIndex
INFO: Could not find partition element corresponding to p18 in partition

May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.CompositeBuilder$Partition getIndex
INFO: Could not find partition element corresponding to p20 in partition

May 26, 2018 4:50:43 PM fr.lip6.move.gal.application.MccTranslator applyOrder
WARNING: Could not apply decomposition. Using flat GAL structure.
java.lang.ArrayIndexOutOfBoundsException: -1
at org.eclipse.emf.common.util.BasicEList.get(BasicEList.java:348)
at fr.lip6.move.gal.instantiate.CompositeBuilder.galToCompositeWithPartition(CompositeBuilder.java:434)
at fr.lip6.move.gal.instantiate.CompositeBuilder.decomposeWithOrder(CompositeBuilder.java:145)
at fr.lip6.move.gal.application.MccTranslator.applyOrder(MccTranslator.java:120)
at fr.lip6.move.gal.application.MccTranslator.flattenSpec(MccTranslator.java:147)
at fr.lip6.move.gal.application.Application.start(Application.java:288)
at fr.lip6.move.gal.itscl.application.Application.start(Application.java:40)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:653)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:590)
at org.eclipse.equinox.launcher.Main.run(Main.java:1499)
at org.eclipse.equinox.launcher.Main.main(Main.java:1472)
May 26, 2018 4:50:43 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 2 ms
May 26, 2018 4:50:43 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 1 ms
May 26, 2018 4:50:43 PM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver computeAndDeclareInvariants
INFO: Computed 0 place invariants in 1 ms
May 26, 2018 4:50:43 PM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver init
INFO: Proved 9 variables to be positive in 46 ms
May 26, 2018 4:50:43 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may disable matrix : 18 transitions.
May 26, 2018 4:50:43 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of disable matrix completed :0/18 took 0 ms. Total solver calls (SAT/UNSAT): 0(0/0)
May 26, 2018 4:50:43 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete disable matrix. took 0 ms. Total solver calls (SAT/UNSAT): 0(0/0)
May 26, 2018 4:50:43 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may enable matrix : 18 transitions.
May 26, 2018 4:50:43 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete enable matrix. took 0 ms. Total solver calls (SAT/UNSAT): 0(0/0)
May 26, 2018 4:50:43 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeCoEnablingMatrix
INFO: Computing symmetric co enabling matrix : 18 transitions.
May 26, 2018 4:50:43 PM org.smtlib.impl.Script execute
WARNING: Script execution failed on command (declare-fun s0 () (Array Int Int)) with error
May 26, 2018 4:50:43 PM org.smtlib.impl.Script execute
WARNING: Script execution failed on command (assert (>= (select s0 6) 1)) with error (error "Failed to assert expression: java.io.IOException: Stream closed (>= (select s0 6) 1)")
[(declare-fun s0 () (Array Int Int)), (assert (>= (select s0 6) 1)), (assert (>= (select s0 6) 0))]
Skipping mayMatrices nes/nds SMT solver raised an exception or timeout when executing script :
org.smtlib.impl.Script@3369df80
java.lang.RuntimeException: SMT solver raised an exception or timeout when executing script :
org.smtlib.impl.Script@3369df80
at fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver.computeCoEnablingMatrix(NecessaryEnablingsolver.java:448)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.printLabels(Gal2PinsTransformerNext.java:530)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.printDependencyMatrix(Gal2PinsTransformerNext.java:209)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.buildBodyFile(Gal2PinsTransformerNext.java:85)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.transform(Gal2PinsTransformerNext.java:830)
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:71)
at java.lang.Thread.run(Thread.java:748)
May 26, 2018 4:50:43 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 116ms conformant to PINS in folder :/home/mcc/execution

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Eratosthenes-PT-020"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Eratosthenes-PT-020.tgz
mv Eratosthenes-PT-020 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is Eratosthenes-PT-020, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r093-blw7-152650005200013"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;