Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..............................................................
/home/mcc/execution
total 192K
-rw-r--r-- 1 mcc users 3.5K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.2K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.7K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.6K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 115 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 353 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.6K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 17 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 21K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool irma4mcc-structural
Input is GPPP-PT-C0100N0000100000, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r091-blw7-152650003700336
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-00
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-01
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-02
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-03
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-04
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-05
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-06
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-07
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-08
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-09
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-10
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-11
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-12
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-13
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-14
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-15

=== Now, execution of the tool begins

BK_START 1527199952775


BK_STOP 1527200485288

--------------------
content from stderr:

Prefix is 75f5f979.
Reading known information in /usr/share/mcc4mcc/75f5f979-known.json.
Reading learned information in /usr/share/mcc4mcc/75f5f979-learned.json.
Reading value translations in /usr/share/mcc4mcc/75f5f979-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using GPPP-PT-C0100N0000100000 as instance name.
Using GPPP as model name.
Using algorithm or tool decision-tree.
Model characteristics are: {'Examination': 'ReachabilityFireability', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': False, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': True, 'Source Place': False, 'Sink Place': False, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': True, 'Conservative': False, 'Sub-Conservative': False, 'Nested Units': False, 'Safe': False, 'Deadlock': None, 'Reversible': None, 'Quasi Live': True, 'Live': None}.
Known tools are: [{'Time': 305959, 'Memory': 15952.4, 'Tool': 'lola'}, {'Time': 331578, 'Memory': 15949.29, 'Tool': 'lola'}].
Learned tools are: [{'Tool': 'lola'}].
Learned tool lola is 1.0x far from the best tool lola.
ReachabilityFireability lola GPPP-PT-C0100N0000100000...

Time: 3600 - MCC
----- Start make prepare stdout -----
----- Start make prepare stderr -----
===========================================================================================
GPPP-PT-C0100N0000100000: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete


checking for too many tokens
===========================================================================================
GPPP-PT-C0100N0000100000: translating PT formula ReachabilityFireability into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stdout -----
----- Start make result stderr -----
ReachabilityFireability @ GPPP-PT-C0100N0000100000 @ 3539 seconds
Makefile:222: recipe for target 'verify' failed
----- Start make result stdout -----
lola: LoLA will run for 3539 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 55/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 33 places, 22 transitions, 21 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 30 transition conflict sets
lola: TASK
lola: reading formula from GPPP-PT-C0100N0000100000-ReachabilityFireability.task
lola: E (F ((FIREABLE(Phosphoglucose_isomerase) AND FIREABLE(TIM_forward) AND FIREABLE(Pyruvate_kinase) AND (FIREABLE(Enolase) OR FIREABLE(GAP_dehydrogenase))))) : E (F (((NOT FIREABLE(Ru5P_isomerase) OR NOT FIREABLE(Ru5P_epimerase)) AND FIREABLE(Pyruvate_kinase) AND FIREABLE(Glutathione_reductose)))) : E (F (((FIREABLE(TIM_forward)) AND FIREABLE(G6P_dehydrogenase) AND FIREABLE(Pyruvate_kinase) AND (FIREABLE(Ru5P_isomerase) OR FIREABLE(Lactate_dehydrogenase)) AND ((FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(Glutathione_oxidation)) OR NOT FIREABLE(Enolase) OR (FIREABLE(TIM_backward) AND FIREABLE(Enolase) AND (FIREABLE(remove) OR FIREABLE(Phosphoglycerate_kinase))))))) : E (F ((NOT FIREABLE(GAP_dehydrogenase) AND NOT FIREABLE(Transaldolase) AND (NOT FIREABLE(Enolase) OR NOT FIREABLE(Transaldolase)) AND FIREABLE(Pyruvate_kinase)))) : E (F ((FIREABLE(Transaldolase) AND FIREABLE(Ru5P_isomerase) AND FIREABLE(generate) AND NOT FIREABLE(remove) AND NOT FIREABLE(Phosphoglycerate_mutase) AND FIREABLE(Enolase) AND (FIREABLE(Phosphoglucose_isomerase) OR FIREABLE(Aldolase) OR FIREABLE(Ru5P_epimerase))))) : E (F ((FIREABLE(Lactate_dehydrogenase) AND FIREABLE(Transketolase2)))) : A (G ((FIREABLE(Aldolase) OR FIREABLE(Transketolase2) OR NOT FIREABLE(Lactate_dehydrogenase)))) : A (G ((NOT FIREABLE(Pyruvate_kinase) OR NOT FIREABLE(Hexokinase) OR FIREABLE(Glutathione_oxidation) OR (NOT FIREABLE(Glutathione_oxidation) AND FIREABLE(Hexokinase))))) : A (G ((NOT FIREABLE(Ru5P_isomerase) OR NOT FIREABLE(Transaldolase)))) : E (F (FIREABLE(remove))) : E (F (FIREABLE(remove))) : E (F (((NOT FIREABLE(G6P_dehydrogenase)) AND FIREABLE(Lactate_dehydrogenase) AND ((FIREABLE(Transketolase2)) OR FIREABLE(generate)) AND (NOT FIREABLE(G6P_dehydrogenase) OR NOT FIREABLE(Transketolase1))))) : E (F ((FIREABLE(Phosphoglycerate_mutase) AND FIREABLE(Aldolase) AND NOT FIREABLE(generate) AND (FIREABLE(Glutathione_reductose) OR (FIREABLE(Glutathione_oxidation) AND FIREABLE(generate))) AND (FIREABLE(Phosphoglycerate_mutase) OR (FIREABLE(GAP_dehydrogenase) AND FIREABLE(Aldolase)))))) : E (F (FIREABLE(Lactate_dehydrogenase))) : E (F (((NOT FIREABLE(Phosphoglycerate_kinase) OR NOT FIREABLE(Aldolase)) AND NOT FIREABLE(remove) AND FIREABLE(Lactate_dehydrogenase) AND NOT FIREABLE(Phosphofructokinase)))) : A (G ((NOT FIREABLE(TIM_backward) OR NOT FIREABLE(Transketolase2))))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Phosphoglucose_isomerase) AND FIREABLE(TIM_forward) AND FIREABLE(Pyruvate_kinase) AND (FIREABLE(Enolase) OR FIREABLE(GAP_dehydrogenase)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 15 literals and 2 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 625 markings, 627 edges
lola: ========================================
lola: subprocess 1 will run for 235 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (((NOT FIREABLE(Ru5P_isomerase) OR NOT FIREABLE(Ru5P_epimerase)) AND FIREABLE(Pyruvate_kinase) AND FIREABLE(Glutathione_reductose))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 20 literals and 4 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability.sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 18 markings, 17 edges
lola: ========================================
lola: subprocess 2 will run for 252 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (((FIREABLE(TIM_forward)) AND FIREABLE(G6P_dehydrogenase) AND FIREABLE(Pyruvate_kinase) AND (FIREABLE(Ru5P_isomerase) OR FIREABLE(Lactate_dehydrogenase)) AND ((FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(Glutathione_oxidation)) OR NOT FIREABLE(Enolase) OR (FIREABLE(TIM_backward) AND FIREABLE(Enolase) AND (FIREABLE(remove) OR FIREABLE(Phosphoglycerate_kinase)))))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 88 literals and 8 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-2.sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 618 markings, 617 edges
lola: ========================================
lola: subprocess 3 will run for 272 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((NOT FIREABLE(GAP_dehydrogenase) AND NOT FIREABLE(Transaldolase) AND (NOT FIREABLE(Enolase) OR NOT FIREABLE(Transaldolase)) AND FIREABLE(Pyruvate_kinase))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: state equation: Generated DNF with 240 literals and 48 conjunctive subformulas
lola: The predicate is reachable.
lola: 23 markings, 24 edges
lola: lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-3.sara
subprocess 4 will run for 294 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Transaldolase) AND FIREABLE(Ru5P_isomerase) AND FIREABLE(generate) AND NOT FIREABLE(remove) AND NOT FIREABLE(Phosphoglycerate_mutase) AND FIREABLE(Enolase) AND (FIREABLE(Phosphoglucose_isomerase) OR FIREABLE(Aldolase) OR FIREABLE(Ru5P_epimerase)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 64 literals and 6 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-4.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000100000-ReachabilityFireability-4.sara.
sara: place or transition ordering is non-deterministic
lola: sara is running 0 secs || 3377046 markings, 8404291 edges, 675409 markings/sec, 0 secs
lola: sara is running 5 secs || 6445481 markings, 15977793 edges, 613687 markings/sec, 5 secs
lola: sara is running 10 secs || 9629438 markings, 23793779 edges, 636791 markings/sec, 10 secs
lola: sara is running 15 secs || 12775433 markings, 31508476 edges, 629199 markings/sec, 15 secs
lola: sara is running 20 secs || 15846519 markings, 39018980 edges, 614217 markings/sec, 20 secs
lola: sara is running 25 secs || 18882698 markings, 46439389 edges, 607236 markings/sec, 25 secs
lola: sara is running 30 secs || 21984505 markings, 54005010 edges, 620361 markings/sec, 30 secs
lola: sara is running 35 secs || 25029498 markings, 61432585 edges, 608999 markings/sec, 35 secs
lola: sara is running 40 secs || 28071144 markings, 68855763 edges, 608329 markings/sec, 40 secs
lola: sara is running 45 secs || 31005905 markings, 75998823 edges, 586952 markings/sec, 45 secs
lola: sara is running 50 secs || 33979361 markings, 83231722 edges, 594691 markings/sec, 50 secs
lola: sara is running 55 secs || 36949405 markings, 90464766 edges, 594009 markings/sec, 55 secs
lola: sara is running 60 secs || 39854664 markings, 97538124 edges, 581052 markings/sec, 60 secs
lola: sara is running 65 secs || 42682992 markings, 104410524 edges, 565666 markings/sec, 65 secs
lola: sara is running 70 secs || 45577487 markings, 111452440 edges, 578899 markings/sec, 70 secs
lola: sara is running 75 secs || 48392182 markings, 118279164 edges, 562939 markings/sec, 75 secs
lola: sara is running 80 secs || 51342757 markings, 125457895 edges, 590115 markings/sec, 80 secs
lola: sara is running 85 secs || 54152601 markings, 132281490 edges, 561969 markings/sec, 85 secs
lola: sara is running 90 secs || 57035151 markings, 139284801 edges, 576510 markings/sec, 90 secs
lola: sara is running 95 secs || 59868196 markings, 146160780 edges, 566609 markings/sec, 95 secs
lola: sara is running 100 secs || 62712037 markings, 153050209 edges, 568768 markings/sec, 100 secs
lola: sara is running 105 secs || 65480121 markings, 159770340 edges, 553617 markings/sec, 105 secs
lola: sara is running 110 secs || 68262097 markings, 166507917 edges, 556395 markings/sec, 110 secs
lola: sara is running 115 secs || 70998753 markings, 173142362 edges, 547331 markings/sec, 115 secs
lola: sara is running 120 secs || 73857245 markings, 180087644 edges, 571698 markings/sec, 120 secs
lola: sara is running 125 secs || 76580663 markings, 186663287 edges, 544684 markings/sec, 125 secs
lola: sara is running 130 secs || 79419381 markings, 193549368 edges, 567744 markings/sec, 130 secs
lola: sara is running 135 secs || 82175210 markings, 200243580 edges, 551166 markings/sec, 135 secs
lola: sara is running 140 secs || 84885923 markings, 206790872 edges, 542143 markings/sec, 140 secs
lola: sara is running 145 secs || 87628067 markings, 213456558 edges, 548429 markings/sec, 145 secs
lola: sara is running 150 secs || 90366258 markings, 220065841 edges, 547638 markings/sec, 150 secs
lola: sara is running 155 secs || 93073877 markings, 226645092 edges, 541524 markings/sec, 155 secs
lola: sara is running 160 secs || 95779179 markings, 233187623 edges, 541060 markings/sec, 160 secs
lola: sara is running 165 secs || 98400241 markings, 239512962 edges, 524212 markings/sec, 165 secs
lola: sara is running 170 secs || 101201010 markings, 246322181 edges, 560154 markings/sec, 170 secs
lola: sara is running 175 secs || 104138841 markings, 253415108 edges, 587566 markings/sec, 175 secs
lola: sara is running 180 secs || 106956477 markings, 260226163 edges, 563527 markings/sec, 180 secs
lola: sara is running 185 secs || 109890768 markings, 267343650 edges, 586858 markings/sec, 185 secs
lola: sara is running 190 secs || 112674232 markings, 274069927 edges, 556693 markings/sec, 190 secs
lola: sara is running 195 secs || 115391585 markings, 280634901 edges, 543471 markings/sec, 195 secs
lola: sara is running 200 secs || 118227231 markings, 287525005 edges, 567129 markings/sec, 200 secs
lola: sara is running 205 secs || 121055865 markings, 294365685 edges, 565727 markings/sec, 205 secs
lola: sara is running 210 secs || 123845824 markings, 301099128 edges, 557992 markings/sec, 210 secs
lola: sara is running 215 secs || 126571376 markings, 307678513 edges, 545110 markings/sec, 215 secs
lola: sara is running 220 secs || 129278839 markings, 314224438 edges, 541493 markings/sec, 220 secs
lola: sara is running 225 secs || 132045027 markings, 320937720 edges, 553238 markings/sec, 225 secs
lola: sara is running 230 secs || 134644778 markings, 327218941 edges, 519950 markings/sec, 230 secs
lola: sara is running 235 secs || 137487205 markings, 334100507 edges, 568485 markings/sec, 235 secs
lola: sara is running 240 secs || 140293042 markings, 340885402 edges, 561167 markings/sec, 240 secs
lola: sara is running 245 secs || 143113104 markings, 347697088 edges, 564012 markings/sec, 245 secs
lola: sara is running 250 secs || 145788062 markings, 354156106 edges, 534992 markings/sec, 250 secs
lola: sara is running 255 secs || 148571515 markings, 360880498 edges, 556691 markings/sec, 255 secs
lola: sara is running 260 secs || 151276082 markings, 367412704 edges, 540913 markings/sec, 260 secs
lola: sara is running 265 secs || 153992375 markings, 373977051 edges, 543259 markings/sec, 265 secs
lola: sara is running 270 secs || 156636352 markings, 380366079 edges, 528795 markings/sec, 270 secs
lola: sara is running 275 secs || 159399805 markings, 387044739 edges, 552691 markings/sec, 275 secs
lola: sara is running 280 secs || 162094675 markings, 393555708 edges, 538974 markings/sec, 280 secs
lola: sara is running 285 secs || 164795371 markings, 400086873 edges, 540139 markings/sec, 285 secs
lola: local time limit reached - aborting
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 5 will run for 295 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Lactate_dehydrogenase) AND FIREABLE(Transketolase2))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 4 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-5.sara
lola: state equation: calling and running sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 22 markings, 21 edges
lola: ========================================
lola: subprocess 6 will run for 324 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((FIREABLE(Aldolase) OR FIREABLE(Transketolase2) OR NOT FIREABLE(Lactate_dehydrogenase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 8 literals and 2 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-6.sara
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 19 markings, 18 edges
lola: ========================================
lola: subprocess 7 will run for 360 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(Pyruvate_kinase) OR NOT FIREABLE(Hexokinase) OR FIREABLE(Glutathione_oxidation) OR (NOT FIREABLE(Glutathione_oxidation) AND FIREABLE(Hexokinase)))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 6 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-7.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000100000-ReachabilityFireability-7.sara.
sara: place or transition ordering is non-deterministic

lola: state equation: solution impossible
lola: SUBRESULT
lola: result: yes
lola: produced by: state equation
lola: The predicate is invariant.
lola: ========================================
lola: subprocess 8 will run for 405 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(Ru5P_isomerase) OR NOT FIREABLE(Transaldolase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 5 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-8.sara
lola: state equation: calling and running sara
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 612 markings, 611 edges
lola: ========================================
lola: subprocess 9 will run for 463 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(remove)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 2 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-9.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000100000-ReachabilityFireability-9.sara.
sara: place or transition ordering is non-deterministic

lola: state equation: solution impossible
lola: SUBRESULT
lola: result: no
lola: produced by: state equation
lola: The predicate is unreachable.
lola: ========================================
lola: subprocess 10 will run for 540 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(remove)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 2 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-10.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000100000-ReachabilityFireability-10.sara.
sara: place or transition ordering is non-deterministic

lola: state equation: solution impossible
lola: SUBRESULT
lola: result: no
lola: produced by: state equation
lola: The predicate is unreachable.
lola: ========================================
lola: subprocess 11 will run for 649 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (((NOT FIREABLE(G6P_dehydrogenase)) AND FIREABLE(Lactate_dehydrogenase) AND ((FIREABLE(Transketolase2)) OR FIREABLE(generate)) AND (NOT FIREABLE(G6P_dehydrogenase) OR NOT FIREABLE(Transketolase1)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 147 literals and 27 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-11.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000100000-ReachabilityFireability-11.sara.
sara: place or transition ordering is non-deterministic
lola: sara is running 0 secs || 4664369 markings, 8366351 edges, 932874 markings/sec, 0 secs
lola: sara is running 5 secs || 9122868 markings, 16551139 edges, 891700 markings/sec, 5 secs
lola: sara is running 10 secs || 14035687 markings, 25431613 edges, 982564 markings/sec, 10 secs
lola: sara is running 15 secs || 18960324 markings, 34291266 edges, 984927 markings/sec, 15 secs
lola: sara is running 20 secs || 22689886 markings, 41939399 edges, 745912 markings/sec, 20 secs
lola: sara is running 25 secs || 26450402 markings, 49278751 edges, 752103 markings/sec, 25 secs
lola: sara is running 30 secs || 30195144 markings, 56464640 edges, 748948 markings/sec, 30 secs
lola: sara is running 35 secs || 34398229 markings, 64901431 edges, 840617 markings/sec, 35 secs
lola: sara is running 40 secs || 39195906 markings, 73525626 edges, 959535 markings/sec, 40 secs
lola: sara is running 45 secs || 43817479 markings, 81804298 edges, 924315 markings/sec, 45 secs
lola: sara is running 50 secs || 48343120 markings, 89878756 edges, 905128 markings/sec, 50 secs
lola: sara is running 55 secs || 53176505 markings, 98479568 edges, 966677 markings/sec, 55 secs
lola: sara is running 60 secs || 57809201 markings, 106696873 edges, 926539 markings/sec, 60 secs
lola: sara is running 65 secs || 61170866 markings, 114225418 edges, 672333 markings/sec, 65 secs
lola: sara is running 70 secs || 64859843 markings, 121702399 edges, 737795 markings/sec, 70 secs
lola: sara is running 75 secs || 68515357 markings, 129198885 edges, 731103 markings/sec, 75 secs
lola: sara is running 80 secs || 72314170 markings, 136512625 edges, 759763 markings/sec, 80 secs
lola: sara is running 85 secs || 75964853 markings, 143605603 edges, 730137 markings/sec, 85 secs
lola: sara is running 90 secs || 79751521 markings, 151140367 edges, 757334 markings/sec, 90 secs
lola: sara is running 95 secs || 83567681 markings, 158324372 edges, 763232 markings/sec, 95 secs
lola: sara is running 100 secs || 86664759 markings, 165688248 edges, 619416 markings/sec, 100 secs
lola: sara is running 105 secs || 90521830 markings, 173290703 edges, 771414 markings/sec, 105 secs
lola: sara is running 110 secs || 94100457 markings, 180692184 edges, 715725 markings/sec, 110 secs
lola: sara is running 115 secs || 97676852 markings, 187937510 edges, 715279 markings/sec, 115 secs
lola: sara is running 120 secs || 101504645 markings, 195475354 edges, 765559 markings/sec, 120 secs
lola: sara is running 125 secs || 105242500 markings, 202438847 edges, 747571 markings/sec, 125 secs
lola: sara is running 130 secs || 109847382 markings, 207369377 edges, 920976 markings/sec, 130 secs
lola: sara is running 135 secs || 113488001 markings, 211422378 edges, 728124 markings/sec, 135 secs
lola: sara is running 140 secs || 117944355 markings, 216546894 edges, 891271 markings/sec, 140 secs
lola: sara is running 145 secs || 122762281 markings, 221712401 edges, 963585 markings/sec, 145 secs
lola: sara is running 150 secs || 126607038 markings, 225945499 edges, 768951 markings/sec, 150 secs
lola: sara is running 155 secs || 129957258 markings, 230207296 edges, 670044 markings/sec, 155 secs
lola: sara is running 160 secs || 133324028 markings, 234056639 edges, 673354 markings/sec, 160 secs
lola: sara is running 165 secs || 136988488 markings, 238572009 edges, 732892 markings/sec, 165 secs
lola: sara is running 170 secs || 140726387 markings, 242758455 edges, 747580 markings/sec, 170 secs
lola: sara is running 175 secs || 144059085 markings, 246562077 edges, 666540 markings/sec, 175 secs
lola: sara is running 180 secs || 147413227 markings, 250743633 edges, 670828 markings/sec, 180 secs
lola: sara is running 185 secs || 150456003 markings, 254247755 edges, 608555 markings/sec, 185 secs
lola: sara is running 190 secs || 153631053 markings, 258324098 edges, 635010 markings/sec, 190 secs
lola: sara is running 195 secs || 156943196 markings, 262095595 edges, 662429 markings/sec, 195 secs
lola: sara is running 200 secs || 160497087 markings, 266484671 edges, 710778 markings/sec, 200 secs
lola: sara is running 205 secs || 164211079 markings, 270630770 edges, 742798 markings/sec, 205 secs
lola: sara is running 210 secs || 167552611 markings, 274487308 edges, 668306 markings/sec, 210 secs
lola: sara is running 215 secs || 170694379 markings, 278597196 edges, 628354 markings/sec, 215 secs
lola: sara is running 220 secs || 173671365 markings, 282171071 edges, 595397 markings/sec, 220 secs
lola: sara is running 225 secs || 176146592 markings, 285386471 edges, 495045 markings/sec, 225 secs
lola: Child process aborted or communication problem between parent and child process
terminate called after throwing an instance of 'std::runtime_error'
what(): parse error at position 0: unexpected character, last read: '`'
Aborted (core dumped)
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-0 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-1 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-2 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-3 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-4 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-5 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-6 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-7 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-8 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-9 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-10 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-11 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-12 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-13 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-14 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-15 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stdout -----
make: [verify] Error 134 (ignored)
----- Start make result stderr -----
----- Kill lola and sara stderr -----
----- Finished stdout -----
----- Finished stderr -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0100N0000100000"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="irma4mcc-structural"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0100N0000100000.tgz
mv GPPP-PT-C0100N0000100000 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool irma4mcc-structural"
echo " Input is GPPP-PT-C0100N0000100000, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r091-blw7-152650003700336"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;