Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.....................
/home/mcc/execution
total 184K
-rw-r--r-- 1 mcc users 3.2K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.9K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 15K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.7K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.5K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.7K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 115 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 353 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.4K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 16K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 17 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 21K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool irma4mcc-structural
Input is GPPP-PT-C0100N0000000100, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r091-blw7-152650003600312
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-00
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-01
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-02
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-03
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-04
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-05
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-06
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-07
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-08
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-09
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-10
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-11
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-12
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-13
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-14
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1527197194876


BK_STOP 1527197618096

--------------------
content from stderr:

Prefix is 75f5f979.
Reading known information in /usr/share/mcc4mcc/75f5f979-known.json.
Reading learned information in /usr/share/mcc4mcc/75f5f979-learned.json.
Reading value translations in /usr/share/mcc4mcc/75f5f979-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using GPPP-PT-C0100N0000000100 as instance name.
Using GPPP as model name.
Using algorithm or tool bmdt.
Model characteristics are: {'Examination': 'CTLFireability', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': False, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': True, 'Source Place': False, 'Sink Place': False, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': True, 'Conservative': False, 'Sub-Conservative': False, 'Nested Units': False, 'Safe': False, 'Deadlock': None, 'Reversible': None, 'Quasi Live': True, 'Live': None}.
Known tools are: [{'Time': 1345619, 'Memory': 15936.7, 'Tool': 'marcie'}, {'Time': 1362158, 'Memory': 15936.84, 'Tool': 'marcie'}, {'Time': 2403855, 'Memory': 15952.73, 'Tool': 'lola'}, {'Time': 2417954, 'Memory': 15939.02, 'Tool': 'lola'}].
Learned tools are: [{'Tool': 'itstools'}].
CTLFireability marcie GPPP-PT-C0100N0000000100...
timeout --kill-after=10s --signal=SIGINT 1m for testing only
check for maximal unmarked siphon

Marcie rev. 8852M (built: crohr on 2017-05-03)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=CTLFireability.xml --memory=6

parse successfull
net created successfully

Net: GPPP_PT_C0100N0000000100
(NrP: 33 NrTr: 22 NrArc: 83)

ok
check for constant places
ok
parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


net check time: 0m 0.000sec

init dd package: 0m 1.436sec

ptnet_zbdd.cc:255: Boundedness exception: net is not 1-bounded!

parse successfull
net created successfully

Net: GPPP_PT_C0100N0000000100
(NrP: 33 NrTr: 22 NrArc: 83)

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

ok
check if there are transitions that can never fire
ok

net check time: 0m 0.000sec

init dd package: 0m 3.999sec


initing FirstDep: 0m 0.000sec


iterations count:11981 (544), effective:2887 (131)

initing FirstDep: 0m 0.000sec


RS generation: 0m36.787sec


-> reachability set: #nodes 562750 (5.6e+05) #states 2,454,033,179,726,092 (15)



starting MCC model checker
--------------------------


sat_reach.icc:155: Timeout: after 222 sec

checking: EG [EX [EF [IS_FIREABLE [Lactate_dehydrogenase]]]]
normalized: EG [EX [E [true U IS_FIREABLE [Lactate_dehydrogenase]]]]

MC time: 3m43.788sec

checking: EG [~ [IS_FIREABLE [Phosphofructokinase]]]
normalized: EG [~ [IS_FIREABLE [Phosphofructokinase]]]

........................................................................................................................................................
FORMULA GPPP-PT-C0100N0000000100-CTLFireability-06 CANNOT_COMPUTE

MC time: 2m26.665sec

checking: EX [AF [AF [IS_FIREABLE [TIM_forward]]]]
normalized: EX [~ [EG [EG [~ [IS_FIREABLE [TIM_forward]]]]]]


FORMULA GPPP-PT-C0100N0000000100-CTLFireability-14 CANNOT_COMPUTE

MC time: 0m 0.001sec

checking: AF [[EX [IS_FIREABLE [Aldolase]] & EF [IS_FIREABLE [remove]]]]
normalized: ~ [EG [~ [[E [true U IS_FIREABLE [remove]] & EX [IS_FIREABLE [Aldolase]]]]]]


FORMULA GPPP-PT-C0100N0000000100-CTLFireability-09 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: A [IS_FIREABLE [Lactate_dehydrogenase] U ~ [EF [IS_FIREABLE [Lactate_dehydrogenase]]]]
normalized: [~ [EG [E [true U IS_FIREABLE [Lactate_dehydrogenase]]]] & ~ [E [E [true U IS_FIREABLE [Lactate_dehydrogenase]] U [~ [IS_FIREABLE [Lactate_dehydrogenase]] & E [true U IS_FIREABLE [Lactate_dehydrogenase]]]]]]


FORMULA GPPP-PT-C0100N0000000100-CTLFireability-10 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: AG [EX [~ [[IS_FIREABLE [remove] & IS_FIREABLE [Ru5P_epimerase]]]]]
normalized: ~ [E [true U ~ [EX [~ [[IS_FIREABLE [remove] & IS_FIREABLE [Ru5P_epimerase]]]]]]]


FORMULA GPPP-PT-C0100N0000000100-CTLFireability-11 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: E [AF [~ [IS_FIREABLE [Phosphofructokinase]]] U IS_FIREABLE [Transketolase2]]
normalized: E [~ [EG [IS_FIREABLE [Phosphofructokinase]]] U IS_FIREABLE [Transketolase2]]


FORMULA GPPP-PT-C0100N0000000100-CTLFireability-13 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: EF [[EG [~ [IS_FIREABLE [Lactate_dehydrogenase]]] & [IS_FIREABLE [Lactate_dehydrogenase] & ~ [~ [IS_FIREABLE [TIM_forward]]]]]]
normalized: E [true U [[IS_FIREABLE [Lactate_dehydrogenase] & IS_FIREABLE [TIM_forward]] & EG [~ [IS_FIREABLE [Lactate_dehydrogenase]]]]]


FORMULA GPPP-PT-C0100N0000000100-CTLFireability-02 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: AG [EF [[~ [IS_FIREABLE [Glutathione_oxidation]] & [IS_FIREABLE [Transaldolase] & IS_FIREABLE [Phosphofructokinase]]]]]
normalized: ~ [E [true U ~ [E [true U [[IS_FIREABLE [Transaldolase] & IS_FIREABLE [Phosphofructokinase]] & ~ [IS_FIREABLE [Glutathione_oxidation]]]]]]]


FORMULA GPPP-PT-C0100N0000000100-CTLFireability-04 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: EF [[EX [~ [IS_FIREABLE [Phosphoclucose_isomerase]]] & AX [[IS_FIREABLE [Transketolase1] | IS_FIREABLE [Ru5P_isomerase]]]]]
normalized: E [true U [~ [EX [~ [[IS_FIREABLE [Transketolase1] | IS_FIREABLE [Ru5P_isomerase]]]]] & EX [~ [IS_FIREABLE [Phosphoclucose_isomerase]]]]]


FORMULA GPPP-PT-C0100N0000000100-CTLFireability-05 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: [EG [EX [[IS_FIREABLE [Aldolase] & IS_FIREABLE [Glutathione_reductose]]]] | ~ [AF [IS_FIREABLE [Phosphofructokinase]]]]
normalized: [EG [~ [IS_FIREABLE [Phosphofructokinase]]] | EG [EX [[IS_FIREABLE [Aldolase] & IS_FIREABLE [Glutathione_reductose]]]]]


FORMULA GPPP-PT-C0100N0000000100-CTLFireability-08 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: EF [[AX [[IS_FIREABLE [Glutathione_reductose] & IS_FIREABLE [Ru5P_isomerase]]] | IS_FIREABLE [Pyruvate_kinase]]]
normalized: E [true U [IS_FIREABLE [Pyruvate_kinase] | ~ [EX [~ [[IS_FIREABLE [Glutathione_reductose] & IS_FIREABLE [Ru5P_isomerase]]]]]]]


FORMULA GPPP-PT-C0100N0000000100-CTLFireability-12 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: [AF [IS_FIREABLE [TIM_backward]] | [IS_FIREABLE [Aldolase] | ~ [EF [[IS_FIREABLE [Phosphoclucose_isomerase] | IS_FIREABLE [Phosphofructokinase]]]]]]
normalized: [[IS_FIREABLE [Aldolase] | ~ [E [true U [IS_FIREABLE [Phosphoclucose_isomerase] | IS_FIREABLE [Phosphofructokinase]]]]] | ~ [EG [~ [IS_FIREABLE [TIM_backward]]]]]


FORMULA GPPP-PT-C0100N0000000100-CTLFireability-07 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: [~ [~ [AF [[IS_FIREABLE [Ru5P_isomerase] & IS_FIREABLE [Hexokinase]]]]] | [A [IS_FIREABLE [Transketolase1] U IS_FIREABLE [Phosphoglycerate_mutase]] | EG [~ [IS_FIREABLE [TIM_backward]]]]]
normalized: [[EG [~ [IS_FIREABLE [TIM_backward]]] | [~ [EG [~ [IS_FIREABLE [Phosphoglycerate_mutase]]]] & ~ [E [~ [IS_FIREABLE [Phosphoglycerate_mutase]] U [~ [IS_FIREABLE [Transketolase1]] & ~ [IS_FIREABLE [Phosphoglycerate_mutase]]]]]]] | ~ [EG [~ [[IS_FIREABLE [Ru5P_isomerase] & IS_FIREABLE [Hexokinase]]]]]]


FORMULA GPPP-PT-C0100N0000000100-CTLFireability-00 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: E [[~ [[IS_FIREABLE [generate] & IS_FIREABLE [Phosphoglycerate_mutase]]] | ~ [[IS_FIREABLE [Lactate_dehydrogenase] | IS_FIREABLE [Ru5P_epimerase]]]] U AG [[IS_FIREABLE [Lactate_dehydrogenase] & IS_FIREABLE [Glutathione_oxidation]]]]
normalized: E [[~ [[IS_FIREABLE [Lactate_dehydrogenase] | IS_FIREABLE [Ru5P_epimerase]]] | ~ [[IS_FIREABLE [generate] & IS_FIREABLE [Phosphoglycerate_mutase]]]] U ~ [E [true U ~ [[IS_FIREABLE [Lactate_dehydrogenase] & IS_FIREABLE [Glutathione_oxidation]]]]]]


FORMULA GPPP-PT-C0100N0000000100-CTLFireability-01 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: [[AG [[~ [IS_FIREABLE [Pyruvate_kinase]] & [IS_FIREABLE [Phosphoglycerate_mutase] & IS_FIREABLE [TIM_backward]]]] | [[~ [[IS_FIREABLE [generate] | IS_FIREABLE [Lactate_dehydrogenase]]] | EX [IS_FIREABLE [generate]]] | IS_FIREABLE [Enolase]]] | EG [AF [IS_FIREABLE [TIM_backward]]]]
normalized: [EG [~ [EG [~ [IS_FIREABLE [TIM_backward]]]]] | [[IS_FIREABLE [Enolase] | [EX [IS_FIREABLE [generate]] | ~ [[IS_FIREABLE [generate] | IS_FIREABLE [Lactate_dehydrogenase]]]]] | ~ [E [true U ~ [[[IS_FIREABLE [Phosphoglycerate_mutase] & IS_FIREABLE [TIM_backward]] & ~ [IS_FIREABLE [Pyruvate_kinase]]]]]]]]


FORMULA GPPP-PT-C0100N0000000100-CTLFireability-15 CANNOT_COMPUTE

MC time: 0m 0.000sec

checking: EG [EX [EF [IS_FIREABLE [Lactate_dehydrogenase]]]]
normalized: EG [EX [E [true U IS_FIREABLE [Lactate_dehydrogenase]]]]


FORMULA GPPP-PT-C0100N0000000100-CTLFireability-03 CANNOT_COMPUTE

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc

MC time: 0m 0.000sec

totally nodes used: 48274498 (4.8e+07)
number of garbage collections: 0
fire ops cache: hits/miss/sum: 700008895 160115488 860124383
used/not used/entry size/cache size: 62872221 4236643 16 1024MB
basic ops cache: hits/miss/sum: 142474066 28321590 170795656
used/not used/entry size/cache size: 15727432 1049784 12 192MB
unary ops cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 16777216 8 128MB
abstract ops cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 16777216 12 192MB
state nr cache: hits/miss/sum: 3968761 570551 4539312
used/not used/entry size/cache size: 544880 7843728 32 256MB
max state cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 8388608 32 256MB
uniqueHash elements/entry size/size: 67108864 4 256MB
0 34792628
1 21868431
2 7696311
3 1987862
4 488915
5 138908
6 42259
7 31176
8 16615
9 6165
>= 10 39594

Total processing time: 6m59.788sec

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0100N0000000100"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="irma4mcc-structural"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0100N0000000100.tgz
mv GPPP-PT-C0100N0000000100 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool irma4mcc-structural"
echo " Input is GPPP-PT-C0100N0000000100, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r091-blw7-152650003600312"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;