fond
Model Checking Contest 2018
8th edition, Bratislava, Slovakia, June 26, 2018
Execution of r088-blw7-152649998300259
Last Updated
June 26, 2018

About the Execution of LoLA for GPPP-PT-C0001N0000000100

Execution Summary
Max Memory
Used (MB)
Time wait (ms) CPU Usage (ms) I/O Wait (ms) Computed Result Execution
Status
152.450 897.00 1822.00 19.80 TTFFFTTTTFFTTTTF normal

Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
................
/home/mcc/execution
total 188K
-rw-r--r-- 1 mcc users 3.4K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.0K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 15K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.7K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.5K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.4K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 115 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 353 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 17 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 21K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool lola
Input is GPPP-PT-C0001N0000000100, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r088-blw7-152649998300259
=====================================================================


--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-00
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-01
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-02
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-03
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-04
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-05
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-06
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-07
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-08
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-09
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-10
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-11
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-12
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-13
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-14
FORMULA_NAME GPPP-PT-C0001N0000000100-ReachabilityFireability-15

=== Now, execution of the tool begins

BK_START 1526708224943

info: Time: 3600 - MCC
===========================================================================================
prep: translating GPPP-PT-C0001N0000000100 Petri net model.pnml into LoLA format
===========================================================================================
prep: translating PT Petri net complete
prep: check for too many tokens
===========================================================================================
prep: translating GPPP-PT-C0001N0000000100 formula ReachabilityFireability into LoLA format
===========================================================================================
prep: translating PT formula complete
vrfy: Checking ReachabilityFireability @ GPPP-PT-C0001N0000000100 @ 3569 seconds
lola: LoLA will run for 3569 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 55/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: Size of bit vector: 1056
lola: finding significant places
lola: 33 places, 22 transitions, 20 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 30 transition conflict sets
lola: TASK
lola: reading formula from GPPP-PT-C0001N0000000100-ReachabilityFireability.task
lola: A (G ((NOT FIREABLE(remove) OR NOT FIREABLE(Ru5P_isomerase) OR (NOT FIREABLE(Phosphofructokinase) AND NOT FIREABLE(Ru5P_isomerase)) OR FIREABLE(TIM_forward)))) : E (F (((FIREABLE(Pyruvate_kinase) OR FIREABLE(Phosphoclucose_isomerase) OR (FIREABLE(generate) AND FIREABLE(Aldolase))) AND FIREABLE(Aldolase) AND (NOT FIREABLE(Aldolase) OR (FIREABLE(remove) AND FIREABLE(GAP_dehydrogenase)) OR FIREABLE(Glutathione_oxidation))))) : A (G ((NOT FIREABLE(Phosphoglycerate_mutase) OR NOT FIREABLE(Hexokinase) OR FIREABLE(Pyruvate_kinase) OR FIREABLE(Phosphoglycerate_kinase) OR FIREABLE(Glutathione_reductose) OR FIREABLE(Phosphofructokinase) OR FIREABLE(Enolase) OR (FIREABLE(Ru5P_isomerase) AND FIREABLE(Glutathione_oxidation))))) : E (F ((FIREABLE(Transketolase1) AND FIREABLE(Pyruvate_kinase)))) : A (G (NOT FIREABLE(remove))) : E (F (((FIREABLE(Phosphoglycerate_mutase) OR (NOT FIREABLE(Phosphofructokinase) AND FIREABLE(Transketolase1))) AND FIREABLE(Pyruvate_kinase)))) : A (G (())) : A (G ((((FIREABLE(Pyruvate_kinase) OR FIREABLE(GAP_dehydrogenase)) AND NOT FIREABLE(Transketolase1)) OR FIREABLE(TIM_forward) OR NOT FIREABLE(Aldolase) OR NOT FIREABLE(GAP_dehydrogenase) OR FIREABLE(TIM_backward)))) : A (G ((NOT FIREABLE(Transketolase2) OR NOT FIREABLE(remove) OR FIREABLE(TIM_forward) OR FIREABLE(Ru5P_isomerase)))) : E (F ((FIREABLE(Phosphoclucose_isomerase) AND FIREABLE(Phosphofructokinase)))) : E (F (())) : A (G (((NOT FIREABLE(Glutathione_reductose) AND NOT FIREABLE(Transaldolase)) OR (NOT FIREABLE(Ru5P_epimerase) AND NOT FIREABLE(Phosphoglycerate_mutase)) OR (NOT FIREABLE(Pyruvate_kinase) AND NOT FIREABLE(G6P_dehydrogenase)) OR (NOT FIREABLE(Phosphoclucose_isomerase) AND NOT FIREABLE(Transketolase1))))) : A (G (())) : E (F ((NOT FIREABLE(G6P_dehydrogenase) AND NOT FIREABLE(Transketolase1) AND FIREABLE(Phosphoclucose_isomerase) AND FIREABLE(Glutathione_oxidation)))) : E (F ((NOT FIREABLE(Transaldolase) AND NOT FIREABLE(TIM_backward) AND NOT FIREABLE(Lactate_dehydrogenase) AND FIREABLE(remove)))) : E (F ((FIREABLE(Enolase) AND (FIREABLE(Ru5P_isomerase) OR FIREABLE(GAP_dehydrogenase)) AND FIREABLE(Phosphoclucose_isomerase) AND FIREABLE(Transketolase2))))
lola: rewrite Frontend/Parser/formula_rewrite.k:100
lola: rewrite Frontend/Parser/formula_rewrite.k:160
lola: rewrite Frontend/Parser/formula_rewrite.k:151
lola: rewrite Frontend/Parser/formula_rewrite.k:98
lola: rewrite Frontend/Parser/formula_rewrite.k:157
lola: rewrite Frontend/Parser/formula_rewrite.k:148
lola: rewrite Frontend/Parser/formula_rewrite.k:100
lola: rewrite Frontend/Parser/formula_rewrite.k:160
lola: rewrite Frontend/Parser/formula_rewrite.k:151
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 223 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: TRUE
lola: ========================================
lola: SUBTASK
lola: checking initial satisfaction
lola: processed formula: TRUE
lola: processed formula length: 4
lola: 9 rewrites
lola: closed formula file GPPP-PT-C0001N0000000100-ReachabilityFireability.task
lola: processed formula with 0 atomic propositions
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: preprocessing
lola: The net satisfies the property already in its initial state.
lola: 0 markings, 0 edges
lola: ========================================

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-6 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 1 will run for 237 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: FALSE
lola: ========================================
lola: SUBTASK
lola: checking initial satisfaction
lola: processed formula: FALSE
lola: processed formula length: 5
lola: 9 rewrites
lola: closed formula file GPPP-PT-C0001N0000000100-ReachabilityFireability.task
lola: processed formula with 0 atomic propositions
lola: RUNNING
lola: SUBRESULT
lola: result: no
lola: produced by: preprocessing
lola: The net violates the given property already in its initial state.
lola: 0 markings, 0 edges
lola: ========================================

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-10 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 2 will run for 254 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: TRUE
lola: ========================================
lola: SUBTASK
lola: checking initial satisfaction
lola: processed formula: TRUE
lola: processed formula length: 4
lola: 9 rewrites
lola: closed formula file GPPP-PT-C0001N0000000100-ReachabilityFireability.task
lola: processed formula with 0 atomic propositions
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: preprocessing
lola: The net satisfies the property already in its initial state.
lola: 0 markings, 0 edges
lola: ========================================

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-12 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 3 will run for 274 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A (G (NOT FIREABLE(remove)))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:631
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: processed formula: A (G (NOT FIREABLE(remove)))
lola: processed formula length: 28
lola: 11 rewrites
lola: closed formula file GPPP-PT-C0001N0000000100-ReachabilityFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:631
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: formula 0: FIREABLE(remove)
lola: state equation: Generated DNF with 2 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000100-ReachabilityFireability-3-0.sara
lola: state equation: calling and running sara
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 67 markings, 66 edges
lola: ========================================

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-4 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 4 will run for 297 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Transketolase1) AND FIREABLE(Pyruvate_kinase))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: processed formula: E (F ((FIREABLE(Transketolase1) AND FIREABLE(Pyruvate_kinase))))
lola: processed formula length: 64
lola: 10 rewrites
lola: closed formula file GPPP-PT-C0001N0000000100-ReachabilityFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: formula 0: (FIREABLE(Transketolase1) AND FIREABLE(Pyruvate_kinase))
lola: state equation: Generated DNF with 4 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000100-ReachabilityFireability-4-0.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0001N0000000100-ReachabilityFireability-4-0.sara.
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is unreachable.
lola: 66157 markings, 103568 edges
lola: ========================================

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-3 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 5 will run for 324 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Phosphoclucose_isomerase) AND FIREABLE(Phosphofructokinase))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: processed formula: E (F ((FIREABLE(Phosphoclucose_isomerase) AND FIREABLE(Phosphofructokinase))))
lola: processed formula length: 78
lola: 10 rewrites
lola: closed formula file GPPP-PT-C0001N0000000100-ReachabilityFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: formula 0: (FIREABLE(Phosphoclucose_isomerase) AND FIREABLE(Phosphofructokinase))
lola: state equation: Generated DNF with 4 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000100-ReachabilityFireability-5-0.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0001N0000000100-ReachabilityFireability-5-0.sara.

lola: state equation: solution impossible
lola: SUBRESULT
lola: result: no
lola: produced by: state equation
lola: The predicate is unreachable.
lola: ========================================

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-9 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 6 will run for 356 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F (((FIREABLE(Phosphoglycerate_mutase) OR (NOT FIREABLE(Phosphofructokinase) AND FIREABLE(Transketolase1))) AND FIREABLE(Pyruvate_kinase))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: processed formula: E (F (((FIREABLE(Phosphoglycerate_mutase) OR (NOT FIREABLE(Phosphofructokinase) AND FIREABLE(Transketolase1))) AND FIREABLE(Pyruvate_kinase))))
lola: processed formula length: 144
lola: 10 rewrites
lola: closed formula file GPPP-PT-C0001N0000000100-ReachabilityFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: formula 0: ((FIREABLE(Phosphoglycerate_mutase) OR (NOT FIREABLE(Phosphofructokinase) AND FIREABLE(Transketolase1))) AND FIREABLE(Pyruvate_kinase))
lola: state equation: Generated DNF with 13 literals and 3 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000100-ReachabilityFireability-6-0.sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 26 markings, 25 edges
lola: ========================================

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-5 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 7 will run for 396 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(remove) OR NOT FIREABLE(Ru5P_isomerase) OR (NOT FIREABLE(Phosphofructokinase) AND NOT FIREABLE(Ru5P_isomerase)) OR FIREABLE(TIM_forward))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:631
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: processed formula: A (G ((NOT FIREABLE(remove) OR NOT FIREABLE(Ru5P_isomerase) OR (NOT FIREABLE(Phosphofructokinase) AND NOT FIREABLE(Ru5P_isomerase)) OR FIREABLE(TIM_forward))))
lola: processed formula length: 162
lola: 11 rewrites
lola: closed formula file GPPP-PT-C0001N0000000100-ReachabilityFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:631
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: formula 0: (FIREABLE(remove) AND FIREABLE(Ru5P_isomerase) AND (FIREABLE(Phosphofructokinase) OR FIREABLE(Ru5P_isomerase)) AND NOT FIREABLE(TIM_forward))
lola: state equation: Generated DNF with 14 literals and 2 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000100-ReachabilityFireability-7-0.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0001N0000000100-ReachabilityFireability-7-0.sara.

lola: state equation: solution impossible
lola: SUBRESULT
lola: result: yes
lola: produced by: state equation
lola: The predicate is invariant.

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-0 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: ========================================
lola: subprocess 8 will run for 446 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(Transketolase2) OR NOT FIREABLE(remove) OR FIREABLE(TIM_forward) OR FIREABLE(Ru5P_isomerase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:631
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: processed formula: A (G ((NOT FIREABLE(Transketolase2) OR NOT FIREABLE(remove) OR FIREABLE(TIM_forward) OR FIREABLE(Ru5P_isomerase))))
lola: processed formula length: 118
lola: 11 rewrites
lola: closed formula file GPPP-PT-C0001N0000000100-ReachabilityFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:631
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: formula 0: (FIREABLE(Transketolase2) AND FIREABLE(remove) AND NOT FIREABLE(TIM_forward) AND NOT FIREABLE(Ru5P_isomerase))
lola: state equation: Generated DNF with 12 literals and 2 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000100-ReachabilityFireability-8-0.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0001N0000000100-ReachabilityFireability-8-0.sara.

lola: state equation: solution impossible
lola: SUBRESULT
lola: result: yes
lola: produced by: state equation
lola: The predicate is invariant.
lola: ========================================

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-8 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 9 will run for 509 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F ((NOT FIREABLE(G6P_dehydrogenase) AND NOT FIREABLE(Transketolase1) AND FIREABLE(Phosphoclucose_isomerase) AND FIREABLE(Glutathione_oxidation))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: processed formula: E (F ((NOT FIREABLE(G6P_dehydrogenase) AND NOT FIREABLE(Transketolase1) AND FIREABLE(Phosphoclucose_isomerase) AND FIREABLE(Glutathione_oxidation))))
lola: processed formula length: 149
lola: 10 rewrites
lola: closed formula file GPPP-PT-C0001N0000000100-ReachabilityFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: formula 0: (NOT FIREABLE(G6P_dehydrogenase) AND NOT FIREABLE(Transketolase1) AND FIREABLE(Phosphoclucose_isomerase) AND FIREABLE(Glutathione_oxidation))
lola: state equation: Generated DNF with 20 literals and 4 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000100-ReachabilityFireability-9-0.sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 71 markings, 70 edges
lola: ========================================

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-13 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 10 will run for 594 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F ((NOT FIREABLE(Transaldolase) AND NOT FIREABLE(TIM_backward) AND NOT FIREABLE(Lactate_dehydrogenase) AND FIREABLE(remove))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: processed formula: E (F ((NOT FIREABLE(Transaldolase) AND NOT FIREABLE(TIM_backward) AND NOT FIREABLE(Lactate_dehydrogenase) AND FIREABLE(remove))))
lola: processed formula length: 129
lola: 10 rewrites
lola: closed formula file GPPP-PT-C0001N0000000100-ReachabilityFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: formula 0: (NOT FIREABLE(Transaldolase) AND NOT FIREABLE(TIM_backward) AND NOT FIREABLE(Lactate_dehydrogenase) AND FIREABLE(remove))
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 77 markings, 85 edges
lola:
FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-14 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 11 will run for 713 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Enolase) AND (FIREABLE(Ru5P_isomerase) OR FIREABLE(GAP_dehydrogenase)) AND FIREABLE(Phosphoclucose_isomerase) AND FIREABLE(Transketolase2))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: processed formula: E (F ((FIREABLE(Enolase) AND (FIREABLE(Ru5P_isomerase) OR FIREABLE(GAP_dehydrogenase)) AND FIREABLE(Phosphoclucose_isomerase) AND FIREABLE(Transketolase2))))
lola: processed formula length: 158
lola: 10 rewrites
lola: closed formula file GPPP-PT-C0001N0000000100-ReachabilityFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: formula 0: (FIREABLE(Enolase) AND (FIREABLE(Ru5P_isomerase) OR FIREABLE(GAP_dehydrogenase)) AND FIREABLE(Phosphoclucose_isomerase) AND FIREABLE(Transketolase2))
lola: state equation: Generated DNF with 16 literals and 2 conjunctive subformulas
state equation: Generated DNF with 30 literals and 6 conjunctive subformulas
lola: ========================================
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000100-ReachabilityFireability-11-0.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0001N0000000100-ReachabilityFireability-11-0.sara.
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is unreachable.
lola: 88000 markings, 173760 edges
lola: ========================================

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-15 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 12 will run for 892 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A (G ((((FIREABLE(Pyruvate_kinase) OR FIREABLE(GAP_dehydrogenase)) AND NOT FIREABLE(Transketolase1)) OR FIREABLE(TIM_forward) OR NOT FIREABLE(Aldolase) OR NOT FIREABLE(GAP_dehydrogenase) OR FIREABLE(TIM_backward))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:631
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: processed formula: A (G ((((FIREABLE(Pyruvate_kinase) OR FIREABLE(GAP_dehydrogenase)) AND NOT FIREABLE(Transketolase1)) OR FIREABLE(TIM_forward) OR NOT FIREABLE(Aldolase) OR NOT FIREABLE(GAP_dehydrogenase) OR FIREABLE(TIM_backward))))
lola: processed formula length: 220
lola: 11 rewrites
lola: closed formula file GPPP-PT-C0001N0000000100-ReachabilityFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:631
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: formula 0: (((NOT FIREABLE(Pyruvate_kinase) AND NOT FIREABLE(GAP_dehydrogenase)) OR FIREABLE(Transketolase1)) AND NOT FIREABLE(TIM_forward) AND FIREABLE(Aldolase) AND FIREABLE(GAP_dehydrogenase) AND NOT FIREABLE(TIM_backward))
lola: state equation: State predicate is contradiction.
lola: SUBRESULT
lola: result: yes
lola: produced by: state equation
lola: The predicate is invariant.
lola: ========================================

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-7 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 13 will run for 1189 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F (((FIREABLE(Pyruvate_kinase) OR FIREABLE(Phosphoclucose_isomerase) OR (FIREABLE(generate) AND FIREABLE(Aldolase))) AND FIREABLE(Aldolase) AND (NOT FIREABLE(Aldolase) OR (FIREABLE(remove) AND FIREABLE(GAP_dehydrogenase)) OR FIREABLE(Glutathione_oxidation)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: processed formula: E (F (((FIREABLE(Pyruvate_kinase) OR FIREABLE(Phosphoclucose_isomerase) OR (FIREABLE(generate) AND FIREABLE(Aldolase))) AND FIREABLE(Aldolase) AND (NOT FIREABLE(Aldolase) OR (FIREABLE(remove) AND FIREABLE(GAP_dehydrogenase)) OR FIREABLE(Glutathione_oxidation)))))
lola: processed formula length: 267
lola: 10 rewrites
lola: closed formula file GPPP-PT-C0001N0000000100-ReachabilityFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: formula 0: ((FIREABLE(Pyruvate_kinase) OR FIREABLE(Phosphoclucose_isomerase) OR (FIREABLE(generate) AND FIREABLE(Aldolase))) AND FIREABLE(Aldolase) AND (NOT FIREABLE(Aldolase) OR (FIREABLE(remove) AND FIREABLE(GAP_dehydrogenase)) OR FIREABLE(Glutathione_oxidation)))
lola: state equation: Generated DNF with 39 literals and 6 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000100-ReachabilityFireability-13-0.sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 2236 markings, 2235 edges
lola: ========================================

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-1 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 14 will run for 1784 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A (G (((NOT FIREABLE(Glutathione_reductose) AND NOT FIREABLE(Transaldolase)) OR (NOT FIREABLE(Ru5P_epimerase) AND NOT FIREABLE(Phosphoglycerate_mutase)) OR (NOT FIREABLE(Pyruvate_kinase) AND NOT FIREABLE(G6P_dehydrogenase)) OR (NOT FIREABLE(Phosphoclucose_isomerase) AND NOT FIREABLE(Transketolase1)))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:631
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: processed formula: A (G (((NOT FIREABLE(Glutathione_reductose) AND NOT FIREABLE(Transaldolase)) OR (NOT FIREABLE(Ru5P_epimerase) AND NOT FIREABLE(Phosphoglycerate_mutase)) OR (NOT FIREABLE(Pyruvate_kinase) AND NOT FIREABLE(G6P_dehydrogenase)) OR (NOT FIREABLE(Phosphoclucose_isomerase) AND NOT FIREABLE(Transketolase1)))))
lola: processed formula length: 306
lola: 11 rewrites
lola: closed formula file GPPP-PT-C0001N0000000100-ReachabilityFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:631
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: formula 0: ((FIREABLE(Glutathione_reductose) OR FIREABLE(Transaldolase)) AND (FIREABLE(Ru5P_epimerase) OR FIREABLE(Phosphoglycerate_mutase)) AND (FIREABLE(Pyruvate_kinase) OR FIREABLE(G6P_dehydrogenase)) AND (FIREABLE(Phosphoclucose_isomerase) OR FIREABLE(Transketolase1)))
lola: state equation: Generated DNF with 136 literals and 16 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000100-ReachabilityFireability-14-0.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0001N0000000100-ReachabilityFireability-14-0.sara.
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is invariant.
lola: 121016 markings, 259694 edges

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-11 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 15 will run for 3569 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(Phosphoglycerate_mutase) OR NOT FIREABLE(Hexokinase) OR FIREABLE(Pyruvate_kinase) OR FIREABLE(Phosphoglycerate_kinase) OR FIREABLE(Glutathione_reductose) OR FIREABLE(Phosphofructokinase) OR FIREABLE(Enolase) OR (FIREABLE(Ru5P_isomerase) AND FIREABLE(Glutathione_oxidation)))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:631
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: processed formula: A (G ((NOT FIREABLE(Phosphoglycerate_mutase) OR NOT FIREABLE(Hexokinase) OR FIREABLE(Pyruvate_kinase) OR FIREABLE(Phosphoglycerate_kinase) OR FIREABLE(Glutathione_reductose) OR FIREABLE(Phosphofructokinase) OR FIREABLE(Enolase) OR (FIREABLE(Ru5P_isomerase) AND FIREABLE(Glutathione_oxidation)))))
lola: processed formula length: 303
lola: 11 rewrites
lola: closed formula file GPPP-PT-C0001N0000000100-ReachabilityFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:631
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: formula 0: (FIREABLE(Phosphoglycerate_mutase) AND FIREABLE(Hexokinase) AND NOT FIREABLE(Pyruvate_kinase) AND NOT FIREABLE(Phosphoglycerate_kinase) AND NOT FIREABLE(Glutathione_reductose) AND NOT FIREABLE(Phosphofructokinase) AND NOT FIREABLE(Enolase) AND (NOT FIREABLE(Ru5P_isomerase) OR NOT FIREABLE(Glutathione_oxidation)))
lola: state equation: Generated DNF with 216 literals and 24 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000100-ReachabilityFireability-15-0.sara
lola: state equation: calling and running sara
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 3566 markings, 3571 edges
lola: ========================================

FORMULA GPPP-PT-C0001N0000000100-ReachabilityFireability-2 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: RESULT
lola:
SUMMARY: yes yes no no no yes yes yes yes no no yes yes yes yes no
lola:
preliminary result: yes yes no no no yes yes yes yes no no yes yes yes yes no
lola: memory consumption: 14768 KB
lola: time consumption: 0 seconds

BK_STOP 1526708225840

--------------------
content from stderr:

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0001N0000000100"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="lola"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0001N0000000100.tgz
mv GPPP-PT-C0001N0000000100 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool lola"
echo " Input is GPPP-PT-C0001N0000000100, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r088-blw7-152649998300259"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;