Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
........................................................................................................................
/home/mcc/execution
total 1.5M
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 22K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.6K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.3K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 10K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.1K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.6K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 105 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 343 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 14K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.6K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.6K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 7 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 1.4M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is Echo-PT-d02r19, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r081-blw3-152649948700447
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Echo-PT-d02r19-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1527379579572

Flatten gal took : 774 ms
Constant places removed 362 places and 1 transitions.
Iterating post reduction 0 with 362 rules applied. Total rules applied 362 place count 3093 transition count 2729
Applied a total of 362 rules in 372 ms. Remains 3093 /3455 variables (removed 362) and now considering 2729/2730 (removed 1) transitions.
// Phase 1: matrix 2729 rows 3093 cols
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph6837029244431881107.txt, -o, /tmp/graph6837029244431881107.bin, -w, /tmp/graph6837029244431881107.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph6837029244431881107.bin, -l, -1, -v, -w, /tmp/graph6837029244431881107.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
built 65 ordering constraints for composite.
built 121 ordering constraints for composite.
built 163 ordering constraints for composite.
built 194 ordering constraints for composite.
built 199 ordering constraints for composite.
built 258 ordering constraints for composite.
built 235 ordering constraints for composite.
built 188 ordering constraints for composite.
built 165 ordering constraints for composite.
built 196 ordering constraints for composite.
built 209 ordering constraints for composite.
built 297 ordering constraints for composite.
built 237 ordering constraints for composite.
built 162 ordering constraints for composite.
built 126 ordering constraints for composite.
built 206 ordering constraints for composite.
built 152 ordering constraints for composite.
Compilation finished in 38843 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 98 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
sparsehash FATAL ERROR: failed to allocate 44 groups

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 27, 2018 12:06:21 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 27, 2018 12:06:21 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 27, 2018 12:06:21 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 288 ms
May 27, 2018 12:06:21 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 3455 places.
May 27, 2018 12:06:21 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 2730 transitions.
May 27, 2018 12:06:22 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 748 ms
May 27, 2018 12:06:22 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 56 ms
May 27, 2018 12:06:23 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 2730 transitions.
May 27, 2018 12:06:25 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 27, 2018 12:06:25 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 2729 transitions.
May 27, 2018 12:06:25 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (2729) to apply POR reductions. Disabling POR matrices.
May 27, 2018 12:06:25 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 413 ms
May 27, 2018 12:06:26 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 696ms conformant to PINS in folder :/home/mcc/execution
May 27, 2018 12:06:26 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 365 ms
Begin: Sun May 27 00:06:26 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Sun May 27 00:06:26 2018
network size: 3093 nodes, 18656 links, 5456 weight
quality increased from -0.000461317 to 0.457184
end computation: Sun May 27 00:06:26 2018
level 1:
start computation: Sun May 27 00:06:26 2018
network size: 466 nodes, 4939 links, 5456 weight
quality increased from 0.457184 to 0.769637
end computation: Sun May 27 00:06:26 2018
level 2:
start computation: Sun May 27 00:06:26 2018
network size: 49 nodes, 298 links, 5456 weight
quality increased from 0.769637 to 0.813259
end computation: Sun May 27 00:06:26 2018
level 3:
start computation: Sun May 27 00:06:26 2018
network size: 20 nodes, 101 links, 5456 weight
quality increased from 0.813259 to 0.815827
end computation: Sun May 27 00:06:26 2018
level 4:
start computation: Sun May 27 00:06:26 2018
network size: 17 nodes, 82 links, 5456 weight
quality increased from 0.815827 to 0.815827
end computation: Sun May 27 00:06:26 2018
End: Sun May 27 00:06:26 2018
Total duration: 0 sec
0.815827
May 27, 2018 12:06:26 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 27, 2018 12:06:26 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 291 ms
May 27, 2018 12:06:27 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 27, 2018 12:06:28 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 3454 redundant transitions.
May 27, 2018 12:06:28 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 43 ms
ITS-tools command line returned an error code 1

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Echo-PT-d02r19"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Echo-PT-d02r19.tgz
mv Echo-PT-d02r19 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is Echo-PT-d02r19, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r081-blw3-152649948700447"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;