Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.................
/home/mcc/execution
total 7.5M
-rw-r--r-- 1 mcc users 3.2K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 14K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.1K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.8K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.2K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.4K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 113 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 351 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.8K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 13K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 8 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 7.3M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is Diffusion2D-PT-D50N150, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r081-blw3-152649948500312
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D50N150-CTLFireability-00
FORMULA_NAME Diffusion2D-PT-D50N150-CTLFireability-01
FORMULA_NAME Diffusion2D-PT-D50N150-CTLFireability-02
FORMULA_NAME Diffusion2D-PT-D50N150-CTLFireability-03
FORMULA_NAME Diffusion2D-PT-D50N150-CTLFireability-04
FORMULA_NAME Diffusion2D-PT-D50N150-CTLFireability-05
FORMULA_NAME Diffusion2D-PT-D50N150-CTLFireability-06
FORMULA_NAME Diffusion2D-PT-D50N150-CTLFireability-07
FORMULA_NAME Diffusion2D-PT-D50N150-CTLFireability-08
FORMULA_NAME Diffusion2D-PT-D50N150-CTLFireability-09
FORMULA_NAME Diffusion2D-PT-D50N150-CTLFireability-10
FORMULA_NAME Diffusion2D-PT-D50N150-CTLFireability-11
FORMULA_NAME Diffusion2D-PT-D50N150-CTLFireability-12
FORMULA_NAME Diffusion2D-PT-D50N150-CTLFireability-13
FORMULA_NAME Diffusion2D-PT-D50N150-CTLFireability-14
FORMULA_NAME Diffusion2D-PT-D50N150-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1527331033096

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph9210196380445658077.txt, -o, /tmp/graph9210196380445658077.bin, -w, /tmp/graph9210196380445658077.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph9210196380445658077.bin, -l, -1, -v, -w, /tmp/graph9210196380445658077.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
built 61 ordering constraints for composite.
built 416 ordering constraints for composite.
built 742 ordering constraints for composite.
built 590 ordering constraints for composite.
built 866 ordering constraints for composite.
built 444 ordering constraints for composite.
built 632 ordering constraints for composite.
built 572 ordering constraints for composite.
built 586 ordering constraints for composite.
built 576 ordering constraints for composite.
built 786 ordering constraints for composite.
built 374 ordering constraints for composite.
built 660 ordering constraints for composite.
built 740 ordering constraints for composite.
built 606 ordering constraints for composite.
built 682 ordering constraints for composite.
built 754 ordering constraints for composite.
built 410 ordering constraints for composite.
built 618 ordering constraints for composite.
built 298 ordering constraints for composite.
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc

BK_STOP 1527332808075

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 26, 2018 10:37:14 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 26, 2018 10:37:14 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 26, 2018 10:37:15 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 445 ms
May 26, 2018 10:37:15 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 2500 places.
May 26, 2018 10:37:15 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 19404 transitions.
May 26, 2018 10:37:15 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 26, 2018 10:37:16 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 1310 ms
May 26, 2018 10:37:17 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 867 ms
Begin: Sat May 26 10:37:19 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Sat May 26 10:37:19 2018
network size: 2500 nodes, 19404 links, 38808 weight
quality increased from -0.000404478 to 0.522922
end computation: Sat May 26 10:37:19 2018
level 1:
start computation: Sat May 26 10:37:19 2018
network size: 356 nodes, 2404 links, 38808 weight
quality increased from 0.522922 to 0.788632
end computation: Sat May 26 10:37:19 2018
level 2:
start computation: Sat May 26 10:37:19 2018
network size: 54 nodes, 326 links, 38808 weight
quality increased from 0.788632 to 0.831542
end computation: Sat May 26 10:37:19 2018
level 3:
start computation: Sat May 26 10:37:19 2018
network size: 21 nodes, 117 links, 38808 weight
quality increased from 0.831542 to 0.832552
end computation: Sat May 26 10:37:19 2018
level 4:
start computation: Sat May 26 10:37:19 2018
network size: 19 nodes, 103 links, 38808 weight
quality increased from 0.832552 to 0.832552
end computation: Sat May 26 10:37:19 2018
End: Sat May 26 10:37:19 2018
Total duration: 0 sec
0.832552
May 26, 2018 10:37:19 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 26, 2018 10:37:20 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 892 ms
May 26, 2018 10:37:20 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 26, 2018 10:37:25 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 13616 redundant transitions.
May 26, 2018 10:37:25 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 157 ms
May 26, 2018 10:37:25 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 2 ms
ITS-tools command line returned an error code 134

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D50N150"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D50N150.tgz
mv Diffusion2D-PT-D50N150 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is Diffusion2D-PT-D50N150, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r081-blw3-152649948500312"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;