Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..................
/home/mcc/execution
total 7.5M
-rw-r--r-- 1 mcc users 3.6K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.0K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.8K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.8K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.8K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.1K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 113 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 351 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.9K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 13K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 8 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 7.3M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is Diffusion2D-PT-D50N100, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r081-blw3-152649948500305
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D50N100-CTLFireability-00
FORMULA_NAME Diffusion2D-PT-D50N100-CTLFireability-01
FORMULA_NAME Diffusion2D-PT-D50N100-CTLFireability-02
FORMULA_NAME Diffusion2D-PT-D50N100-CTLFireability-03
FORMULA_NAME Diffusion2D-PT-D50N100-CTLFireability-04
FORMULA_NAME Diffusion2D-PT-D50N100-CTLFireability-05
FORMULA_NAME Diffusion2D-PT-D50N100-CTLFireability-06
FORMULA_NAME Diffusion2D-PT-D50N100-CTLFireability-07
FORMULA_NAME Diffusion2D-PT-D50N100-CTLFireability-08
FORMULA_NAME Diffusion2D-PT-D50N100-CTLFireability-09
FORMULA_NAME Diffusion2D-PT-D50N100-CTLFireability-10
FORMULA_NAME Diffusion2D-PT-D50N100-CTLFireability-11
FORMULA_NAME Diffusion2D-PT-D50N100-CTLFireability-12
FORMULA_NAME Diffusion2D-PT-D50N100-CTLFireability-13
FORMULA_NAME Diffusion2D-PT-D50N100-CTLFireability-14
FORMULA_NAME Diffusion2D-PT-D50N100-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1527327092015

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph5493178508831641289.txt, -o, /tmp/graph5493178508831641289.bin, -w, /tmp/graph5493178508831641289.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph5493178508831641289.bin, -l, -1, -v, -w, /tmp/graph5493178508831641289.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
built 51 ordering constraints for composite.
built 468 ordering constraints for composite.
built 640 ordering constraints for composite.
built 850 ordering constraints for composite.
built 490 ordering constraints for composite.
built 670 ordering constraints for composite.
built 912 ordering constraints for composite.
built 906 ordering constraints for composite.
built 622 ordering constraints for composite.
built 578 ordering constraints for composite.
built 756 ordering constraints for composite.
built 564 ordering constraints for composite.
built 982 ordering constraints for composite.
built 926 ordering constraints for composite.
built 546 ordering constraints for composite.
built 728 ordering constraints for composite.
built 678 ordering constraints for composite.
terminate called after throwing an instance of 'St9bad_alloc'
what(): std::bad_alloc

BK_STOP 1527329275937

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 26, 2018 9:31:33 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 26, 2018 9:31:33 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 26, 2018 9:31:34 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 494 ms
May 26, 2018 9:31:34 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 2500 places.
May 26, 2018 9:31:34 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 19404 transitions.
May 26, 2018 9:31:34 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 26, 2018 9:31:35 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 1285 ms
May 26, 2018 9:31:36 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 856 ms
Begin: Sat May 26 09:31:38 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Sat May 26 09:31:38 2018
network size: 2500 nodes, 19404 links, 38808 weight
quality increased from -0.000404478 to 0.514098
end computation: Sat May 26 09:31:38 2018
level 1:
start computation: Sat May 26 09:31:38 2018
network size: 365 nodes, 2481 links, 38808 weight
quality increased from 0.514098 to 0.791009
end computation: Sat May 26 09:31:38 2018
level 2:
start computation: Sat May 26 09:31:38 2018
network size: 52 nodes, 308 links, 38808 weight
quality increased from 0.791009 to 0.829746
end computation: Sat May 26 09:31:38 2018
level 3:
start computation: Sat May 26 09:31:38 2018
network size: 20 nodes, 108 links, 38808 weight
quality increased from 0.829746 to 0.832278
end computation: Sat May 26 09:31:38 2018
level 4:
start computation: Sat May 26 09:31:38 2018
network size: 16 nodes, 86 links, 38808 weight
quality increased from 0.832278 to 0.832278
end computation: Sat May 26 09:31:38 2018
End: Sat May 26 09:31:38 2018
Total duration: 0 sec
0.832278
May 26, 2018 9:31:38 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 26, 2018 9:31:38 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 776 ms
May 26, 2018 9:31:39 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 26, 2018 9:31:44 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 13958 redundant transitions.
May 26, 2018 9:31:44 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 181 ms
May 26, 2018 9:31:44 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 2 ms
ITS-tools command line returned an error code 134

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D50N100"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D50N100.tgz
mv Diffusion2D-PT-D50N100 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is Diffusion2D-PT-D50N100, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r081-blw3-152649948500305"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;