Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...................
/home/mcc/execution
total 176K
-rw-r--r-- 1 mcc users 3.2K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 13K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:49 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.2K May 15 18:49 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 9.5K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.3K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 115 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 353 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.3K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.7K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:49 equiv_col
-rw-r--r-- 1 mcc users 7 May 15 18:49 instance
-rw-r--r-- 1 mcc users 6 May 15 18:49 iscolored
-rw-r--r-- 1 mcc users 11K May 15 18:49 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool mcc4mcc-full
Input is CircadianClock-PT-010000, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r034-ebro-152646312700508
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-00
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-01
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-02
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-03
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-04
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-05
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-06
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-07
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-08
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-09
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-10
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-11
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-12
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-13
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-14
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1527052873730


BK_STOP 1527053100171

--------------------
content from stderr:

Prefix is 65b80f64.
Reading known information in /usr/share/mcc4mcc/65b80f64-known.json.
Reading learned information in /usr/share/mcc4mcc/65b80f64-learned.json.
Reading value translations in /usr/share/mcc4mcc/65b80f64-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using CircadianClock-PT-010000 as instance name.
Using CircadianClock as model name.
Using algorithm or tool voting-classifier.
Model characteristics are: {'Examination': 'CTLFireability', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': True, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': True, 'Source Place': False, 'Sink Place': False, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': False, 'Conservative': True, 'Sub-Conservative': True, 'Nested Units': False, 'Safe': None, 'Deadlock': False, 'Reversible': None, 'Quasi Live': True, 'Live': True}.
/usr/local/lib/python3.6/dist-packages/sklearn/preprocessing/label.py:151: DeprecationWarning: The truth value of an empty array is ambiguous. Returning False, but in future this will result in an error. Use `array.size > 0` to check that an array is not empty.
if diff:
Known tools are: [{'Time': 971969, 'Memory': 15944.6, 'Tool': 'lola'}, {'Time': 1004273, 'Memory': 15947.63, 'Tool': 'lola'}].
Learned tools are: [{'Tool': 'lola'}].
Learned tool lola is 1.0x far from the best tool lola.
CTLFireability lola CircadianClock-PT-010000...

Time: 3600 - MCC
----- Start make prepare stdout -----
----- Start make prepare stderr -----
===========================================================================================
CircadianClock-PT-010000: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete


checking for too many tokens
===========================================================================================
CircadianClock-PT-010000: translating PT formula CTLFireability into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stderr -----
----- Start make result stdout -----
CTLFireability @ CircadianClock-PT-010000 @ 3540 seconds
Makefile:222: recipe for target 'verify' failed
----- Start make result stdout -----
make: [verify] Error 134 (ignored)
----- Start make result stderr -----
lola: LoLA will run for 3540 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 30/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 14 places, 16 transitions, 7 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 26 transition conflict sets
lola: TASK
lola: reading formula from CircadianClock-PT-010000-CTLFireability.task
lola: A (G (E (F (A (F (FIREABLE(rel_r))))))) : A (G (NOT(NOT(E (F (FIREABLE(bind_a))))))) : E (F (((A (G (FIREABLE(deg_mr))) AND (NOT FIREABLE(deg_a) AND NOT FIREABLE(deg_c))) AND FIREABLE(deactive)))) : E (F (A (X ((FIREABLE(deg_a) AND FIREABLE(bind_r) AND FIREABLE(deg_ma)))))) : A (F (E (F (())))) : A (F (E ((NOT FIREABLE(transl_a) U NOT FIREABLE(transc_da))))) : A (G (A (G (E (F (FIREABLE(transc_dr_a))))))) : FIREABLE(deg_r) : ((FIREABLE(transc_dr) AND NOT(E (F ((FIREABLE(transc_dr) AND FIREABLE(deg_c)))))) OR (() AND (E ((FIREABLE(transc_da_a) U FIREABLE(deg_mr))) AND A (X (FIREABLE(bind_r)))))) : (A (X (NOT FIREABLE(transc_da))) AND A (X ((A (G (FIREABLE(deg_r))) OR FIREABLE(rel_a))))) : FIREABLE(deg_r) : ((FIREABLE(rel_r) AND FIREABLE(transl_a)) OR FIREABLE(transl_r)) : (A ((NOT FIREABLE(transc_dr) U FIREABLE(transl_r))) AND FIREABLE(rel_a)) : A (((NOT FIREABLE(deactive) OR (FIREABLE(transl_a) AND FIREABLE(transc_dr) AND (FIREABLE(transl_r) OR FIREABLE(transc_da_a)))) U A (G (FIREABLE(deactive))))) : (FIREABLE(bind_a) OR NOT((E (F (FIREABLE(bind_a))) AND NOT(A (G (FIREABLE(transc_dr))))))) : A (F (NOT FIREABLE(transc_da)))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (E (F (A (F (FIREABLE(rel_r)))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: NOT(E(TRUE U NOT(E(TRUE U A(TRUE U FIREABLE(rel_r))))))
lola: processed formula length: 55
lola: 3 rewrites
lola: formula mentions 0 of 14 places; total mentions: 0
lola: closed formula file CircadianClock-PT-010000-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 28 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 3 significant temporal operators and needs 13 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: 1490150 markings, 5202103 edges, 3689348869717491712 markings/sec, 0 secs
lola: 2915126 markings, 10200357 edges, 284995 markings/sec, 5 secs
lola: 4290430 markings, 15010770 edges, 275061 markings/sec, 10 secs
lola: 5660787 markings, 19812206 edges, 274071 markings/sec, 15 secs
lola: 7030704 markings, 24589774 edges, 273983 markings/sec, 20 secs
lola: 8360499 markings, 29261575 edges, 265959 markings/sec, 25 secs
lola: 9638317 markings, 33732783 edges, 255564 markings/sec, 30 secs
lola: 10991100 markings, 38453006 edges, 270557 markings/sec, 35 secs
lola: 12336932 markings, 43177109 edges, 269166 markings/sec, 40 secs
lola: 13653463 markings, 47783167 edges, 263306 markings/sec, 45 secs
lola: 14913366 markings, 52192716 edges, 251981 markings/sec, 50 secs
lola: 16165581 markings, 56569625 edges, 250443 markings/sec, 55 secs
lola: 17384781 markings, 60839130 edges, 243840 markings/sec, 60 secs
lola: 18540270 markings, 64890152 edges, 231098 markings/sec, 65 secs
lola: 19700499 markings, 68951010 edges, 232046 markings/sec, 70 secs
lola: 20927829 markings, 73233063 edges, 245466 markings/sec, 75 secs
lola: 22280323 markings, 77980175 edges, 270499 markings/sec, 80 secs
lola: 23572358 markings, 82487797 edges, 258407 markings/sec, 85 secs
lola: 24799577 markings, 86797066 edges, 245444 markings/sec, 90 secs
lola: 26032604 markings, 91095570 edges, 246605 markings/sec, 95 secs
lola: 27278596 markings, 95473019 edges, 249198 markings/sec, 100 secs
lola: 28492850 markings, 99708016 edges, 242851 markings/sec, 105 secs
lola: 29615522 markings, 103650607 edges, 224534 markings/sec, 110 secs
lola: 30693070 markings, 107402943 edges, 215510 markings/sec, 115 secs
lola: 31973198 markings, 111881369 edges, 256026 markings/sec, 120 secs
lola: 33177080 markings, 116116661 edges, 240776 markings/sec, 125 secs
lola: 34373438 markings, 120292830 edges, 239272 markings/sec, 130 secs
lola: 35516374 markings, 124303717 edges, 228587 markings/sec, 135 secs
lola: 36709614 markings, 128468793 edges, 238648 markings/sec, 140 secs
lola: 37777190 markings, 132216869 edges, 213515 markings/sec, 145 secs
lola: 38853886 markings, 135967857 edges, 215339 markings/sec, 150 secs
lola: 39933994 markings, 139760261 edges, 216022 markings/sec, 155 secs
lola: 40994100 markings, 143473809 edges, 212021 markings/sec, 160 secs
lola: 42374238 markings, 148291187 edges, 276028 markings/sec, 165 secs
lola: 43665664 markings, 152826582 edges, 258285 markings/sec, 170 secs
lola: 44934494 markings, 157255838 edges, 253766 markings/sec, 175 secs
lola: 46152349 markings, 161513888 edges, 243571 markings/sec, 180 secs
lola: 47419437 markings, 165965376 edges, 253418 markings/sec, 185 secs
lola: 48616793 markings, 170154739 edges, 239471 markings/sec, 190 secs
lola: 49817817 markings, 174358776 edges, 240205 markings/sec, 195 secs
lola: 50977594 markings, 178417824 edges, 231955 markings/sec, 200 secs
lola: 52235224 markings, 182807136 edges, 251526 markings/sec, 205 secs
lola: 53357330 markings, 186746649 edges, 224421 markings/sec, 210 secs
lola: 54475448 markings, 190650607 edges, 223624 markings/sec, 215 secs
lola: local time limit reached - aborting
lola: Child process aborted or communication problem between parent and child process
terminate called after throwing an instance of 'std::runtime_error'
what(): parse error at position 0: unexpected character, last read: '\ufffd'
Aborted (core dumped)
FORMULA CircadianClock-PT-010000-CTLFireability-0 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-1 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-2 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-3 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-4 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-5 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-6 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-7 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-8 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-9 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-10 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-11 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-12 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-13 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-14 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-15 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stderr -----
----- Kill lola and sara stdout -----
----- Finished stderr -----
----- Finished stdout -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="CircadianClock-PT-010000"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="mcc4mcc-full"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/CircadianClock-PT-010000.tgz
mv CircadianClock-PT-010000 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool mcc4mcc-full"
echo " Input is CircadianClock-PT-010000, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r034-ebro-152646312700508"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;