Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...................
/home/mcc/execution
total 180K
-rw-r--r-- 1 mcc users 3.0K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 16K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.9K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:49 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.2K May 15 18:49 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.0K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.3K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 115 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 353 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.6K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 23K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:49 equiv_col
-rw-r--r-- 1 mcc users 7 May 15 18:49 instance
-rw-r--r-- 1 mcc users 6 May 15 18:49 iscolored
-rw-r--r-- 1 mcc users 11K May 15 18:49 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool mcc4mcc-full
Input is CircadianClock-PT-001000, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r034-ebro-152646312700501
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME CircadianClock-PT-001000-CTLFireability-00
FORMULA_NAME CircadianClock-PT-001000-CTLFireability-01
FORMULA_NAME CircadianClock-PT-001000-CTLFireability-02
FORMULA_NAME CircadianClock-PT-001000-CTLFireability-03
FORMULA_NAME CircadianClock-PT-001000-CTLFireability-04
FORMULA_NAME CircadianClock-PT-001000-CTLFireability-05
FORMULA_NAME CircadianClock-PT-001000-CTLFireability-06
FORMULA_NAME CircadianClock-PT-001000-CTLFireability-07
FORMULA_NAME CircadianClock-PT-001000-CTLFireability-08
FORMULA_NAME CircadianClock-PT-001000-CTLFireability-09
FORMULA_NAME CircadianClock-PT-001000-CTLFireability-10
FORMULA_NAME CircadianClock-PT-001000-CTLFireability-11
FORMULA_NAME CircadianClock-PT-001000-CTLFireability-12
FORMULA_NAME CircadianClock-PT-001000-CTLFireability-13
FORMULA_NAME CircadianClock-PT-001000-CTLFireability-14
FORMULA_NAME CircadianClock-PT-001000-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1527052338011


BK_STOP 1527052564236

--------------------
content from stderr:

Prefix is 65b80f64.
Reading known information in /usr/share/mcc4mcc/65b80f64-known.json.
Reading learned information in /usr/share/mcc4mcc/65b80f64-learned.json.
Reading value translations in /usr/share/mcc4mcc/65b80f64-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using CircadianClock-PT-001000 as instance name.
Using CircadianClock as model name.
Using algorithm or tool voting-classifier.
Model characteristics are: {'Examination': 'CTLFireability', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': True, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': True, 'Source Place': False, 'Sink Place': False, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': False, 'Conservative': True, 'Sub-Conservative': True, 'Nested Units': False, 'Safe': None, 'Deadlock': False, 'Reversible': None, 'Quasi Live': True, 'Live': True}.
/usr/local/lib/python3.6/dist-packages/sklearn/preprocessing/label.py:151: DeprecationWarning: The truth value of an empty array is ambiguous. Returning False, but in future this will result in an error. Use `array.size > 0` to check that an array is not empty.
if diff:
Known tools are: [{'Time': 80366, 'Memory': 9663.66, 'Tool': 'marcie'}, {'Time': 100500, 'Memory': 9663.63, 'Tool': 'marcie'}, {'Time': 591045, 'Memory': 2963.77, 'Tool': 'itstools'}, {'Time': 616086, 'Memory': 2964.49, 'Tool': 'itstools'}, {'Time': 1543994, 'Memory': 15950.85, 'Tool': 'lola'}, {'Time': 1570447, 'Memory': 1134.1, 'Tool': 'gspn'}, {'Time': 1579606, 'Memory': 1162.18, 'Tool': 'gspn'}, {'Time': 1582554, 'Memory': 15939.64, 'Tool': 'lola'}].
Learned tools are: [{'Tool': 'lola'}].
Learned tool lola is 19.212029962919644x far from the best tool marcie.
CTLFireability lola CircadianClock-PT-001000...
----- Start make prepare stderr -----

Time: 3600 - MCC
----- Start make prepare stdout -----
===========================================================================================
CircadianClock-PT-001000: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete


checking for too many tokens
===========================================================================================
CircadianClock-PT-001000: translating PT formula CTLFireability into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stderr -----
----- Start make result stdout -----
CTLFireability @ CircadianClock-PT-001000 @ 3540 seconds
make: [verify] Error 134 (ignored)
----- Start make result stderr -----
Makefile:222: recipe for target 'verify' failed
----- Start make result stdout -----
lola: LoLA will run for 3540 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 30/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 14 places, 16 transitions, 7 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 26 transition conflict sets
lola: TASK
lola: reading formula from CircadianClock-PT-001000-CTLFireability.task
lola: E (F ((((FIREABLE(bind_r) OR FIREABLE(bind_a) OR FIREABLE(transl_a)) AND A (G (FIREABLE(deg_a)))) AND E (G ((FIREABLE(rel_a) AND FIREABLE(transc_dr))))))) : E (F (A (G (((FIREABLE(deg_ma) OR FIREABLE(transc_da)) AND (FIREABLE(deg_c))))))) : E (F ((NOT(A (G (FIREABLE(transc_dr)))) AND A (X ((FIREABLE(deg_a) AND FIREABLE(transc_dr_a))))))) : ((E (F ((NOT FIREABLE(transc_dr)))) OR E (G (FIREABLE(deg_mr)))) OR (A (X ((NOT FIREABLE(rel_a) AND NOT FIREABLE(deg_ma)))) OR ((FIREABLE(bind_r) AND FIREABLE(transc_dr_a) AND (FIREABLE(deg_r) OR FIREABLE(deg_mr))) OR ((FIREABLE(deg_mr) AND FIREABLE(deactive) AND (FIREABLE(bind_a) OR FIREABLE(bind_r))) AND A (G (FIREABLE(deg_a))))))) : ((NOT FIREABLE(transc_da) AND NOT(E (X ((FIREABLE(deg_mr) OR FIREABLE(deactive)))))) OR (NOT(E (F ((FIREABLE(transl_a) AND FIREABLE(transl_r))))) OR A (X (E (X (FIREABLE(transc_dr_a))))))) : NOT FIREABLE(rel_r) : A ((NOT FIREABLE(deg_a) U (FIREABLE(transc_dr_a) OR E (X (FIREABLE(deg_ma)))))) : FIREABLE(deactive) : ((E (((FIREABLE(deg_a) AND FIREABLE(transc_dr_a)) U NOT FIREABLE(transl_r))) OR (NOT FIREABLE(deg_c) AND A (F ((FIREABLE(transc_dr_a) OR FIREABLE(transl_a)))))) AND A (((FIREABLE(rel_r) OR FIREABLE(bind_r)) U E (G (FIREABLE(deg_r)))))) : A (X (E (X (E (G (FIREABLE(transc_da))))))) : FIREABLE(rel_a) : (NOT(A (G (FIREABLE(deg_ma)))) OR E (X (((FIREABLE(transc_da_a) AND FIREABLE(deg_mr) AND (FIREABLE(transc_da_a) OR FIREABLE(deactive))) AND E (G (FIREABLE(rel_a))))))) : FIREABLE(transl_r) : (E (F (FIREABLE(deg_c))) AND (A ((NOT FIREABLE(transc_dr_a) U NOT FIREABLE(rel_r))) AND NOT(A (X (NOT FIREABLE(deg_ma)))))) : (NOT((E (X ((FIREABLE(rel_a) OR FIREABLE(bind_r)))) AND NOT(A (G (FIREABLE(deg_a)))))) AND (E (F (E (F (FIREABLE(deg_a))))) AND E ((FIREABLE(transc_dr) U (FIREABLE(rel_a) OR FIREABLE(bind_r)))))) : (A (X (A ((FIREABLE(deg_c) U FIREABLE(transc_da_a))))) AND FIREABLE(transl_a))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((((FIREABLE(bind_r) OR FIREABLE(bind_a) OR FIREABLE(transl_a)) AND A (G (FIREABLE(deg_a)))) AND E (G ((FIREABLE(rel_a) AND FIREABLE(transc_dr)))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: E(TRUE U ((FIREABLE(bind_r) OR FIREABLE(bind_a) OR FIREABLE(transl_a)) AND (NOT(E(TRUE U NOT FIREABLE(deg_a))) AND NOT(A(TRUE U (NOT FIREABLE(rel_a) OR NOT FIREABLE(transc_dr)))))))
lola: processed formula length: 184
lola: 6 rewrites
lola: formula mentions 0 of 14 places; total mentions: 0
lola: closed formula file CircadianClock-PT-001000-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 28 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 3 significant temporal operators and needs 13 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: 2003002 markings, 5476341 edges, 3689348869717491712 markings/sec, 0 secs
lola: 3004003 markings, 10953691 edges, 200200 markings/sec, 5 secs
lola: 4005007 markings, 16157942 edges, 200201 markings/sec, 10 secs
lola: 5021793 markings, 21551889 edges, 203357 markings/sec, 15 secs
lola: 6055760 markings, 26621342 edges, 206793 markings/sec, 20 secs
lola: 7012566 markings, 31540084 edges, 191361 markings/sec, 25 secs
lola: 8013012 markings, 36170081 edges, 200089 markings/sec, 30 secs
lola: 9014013 markings, 41432350 edges, 200200 markings/sec, 35 secs
lola: 10015017 markings, 46325989 edges, 200201 markings/sec, 40 secs
lola: 11018017 markings, 51224077 edges, 200600 markings/sec, 45 secs
lola: 12019018 markings, 55854808 edges, 200200 markings/sec, 50 secs
lola: 13020022 markings, 60510683 edges, 200201 markings/sec, 55 secs
lola: 14023022 markings, 65184840 edges, 200600 markings/sec, 60 secs
lola: 15024023 markings, 69912421 edges, 200200 markings/sec, 65 secs
lola: 16025027 markings, 74534963 edges, 200201 markings/sec, 70 secs
lola: 17028027 markings, 79172893 edges, 200600 markings/sec, 75 secs
lola: 18029028 markings, 83992074 edges, 200200 markings/sec, 80 secs
lola: 19030032 markings, 88603080 edges, 200201 markings/sec, 85 secs
lola: 19807060 markings, 93160827 edges, 155406 markings/sec, 90 secs
lola: 20521140 markings, 97591420 edges, 142816 markings/sec, 95 secs
lola: 21447590 markings, 102445870 edges, 185290 markings/sec, 100 secs
lola: 22298045 markings, 107150009 edges, 170091 markings/sec, 105 secs
lola: 23127508 markings, 111811137 edges, 165893 markings/sec, 110 secs
lola: 24039038 markings, 116227839 edges, 182306 markings/sec, 115 secs
lola: 25040042 markings, 120878305 edges, 200201 markings/sec, 120 secs
lola: 26043042 markings, 125370048 edges, 200600 markings/sec, 125 secs
lola: 27044043 markings, 129739304 edges, 200200 markings/sec, 130 secs
lola: 28045047 markings, 134031092 edges, 200201 markings/sec, 135 secs
lola: 29014375 markings, 138600054 edges, 193866 markings/sec, 140 secs
lola: 29741816 markings, 143056963 edges, 145488 markings/sec, 145 secs
lola: 30433948 markings, 147442102 edges, 138426 markings/sec, 150 secs
lola: 31063431 markings, 151704785 edges, 125897 markings/sec, 155 secs
lola: 32053052 markings, 155388516 edges, 197924 markings/sec, 160 secs
lola: 33054053 markings, 160203190 edges, 200200 markings/sec, 165 secs
lola: 34055057 markings, 165302079 edges, 200201 markings/sec, 170 secs
lola: 35058057 markings, 170232514 edges, 200600 markings/sec, 175 secs
lola: 36059058 markings, 174723468 edges, 200200 markings/sec, 180 secs
lola: 37060062 markings, 179225056 edges, 200201 markings/sec, 185 secs
lola: 38063062 markings, 183776436 edges, 200600 markings/sec, 190 secs
lola: 38907012 markings, 188411771 edges, 168790 markings/sec, 195 secs
lola: 39629809 markings, 192858745 edges, 144559 markings/sec, 200 secs
lola: 40360714 markings, 197324049 edges, 146181 markings/sec, 205 secs
lola: 41268852 markings, 202141756 edges, 181628 markings/sec, 210 secs
lola: 42108830 markings, 206824017 edges, 167996 markings/sec, 215 secs
lola: local time limit reached - aborting
lola: Child process aborted or communication problem between parent and child process
terminate called after throwing an instance of 'std::runtime_error'
what(): parse error at position 0: unexpected character, last read: '
Aborted (core dumped)
FORMULA CircadianClock-PT-001000-CTLFireability-0 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-001000-CTLFireability-1 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-001000-CTLFireability-2 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-001000-CTLFireability-3 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-001000-CTLFireability-4 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-001000-CTLFireability-5 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-001000-CTLFireability-6 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-001000-CTLFireability-7 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-001000-CTLFireability-8 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-001000-CTLFireability-9 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-001000-CTLFireability-10 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-001000-CTLFireability-11 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-001000-CTLFireability-12 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-001000-CTLFireability-13 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-001000-CTLFireability-14 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-001000-CTLFireability-15 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stdout -----
----- Kill lola and sara stderr -----
----- Finished stdout -----
----- Finished stderr -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="CircadianClock-PT-001000"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="mcc4mcc-full"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/CircadianClock-PT-001000.tgz
mv CircadianClock-PT-001000 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool mcc4mcc-full"
echo " Input is CircadianClock-PT-001000, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r034-ebro-152646312700501"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;