Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...................
/home/mcc/execution
total 176K
-rw-r--r-- 1 mcc users 3.2K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 13K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:49 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.2K May 15 18:49 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 9.5K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.3K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 115 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 353 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.3K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.7K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:49 equiv_col
-rw-r--r-- 1 mcc users 7 May 15 18:49 instance
-rw-r--r-- 1 mcc users 6 May 15 18:49 iscolored
-rw-r--r-- 1 mcc users 11K May 15 18:49 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool irma4mcc-full
Input is CircadianClock-PT-010000, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r030-ebro-152646308700508
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-00
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-01
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-02
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-03
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-04
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-05
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-06
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-07
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-08
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-09
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-10
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-11
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-12
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-13
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-14
FORMULA_NAME CircadianClock-PT-010000-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1526777843854


BK_STOP 1526778070110

--------------------
content from stderr:

Prefix is 65b80f64.
Reading known information in /usr/share/mcc4mcc/65b80f64-known.json.
Reading learned information in /usr/share/mcc4mcc/65b80f64-learned.json.
Reading value translations in /usr/share/mcc4mcc/65b80f64-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using CircadianClock-PT-010000 as instance name.
Using CircadianClock as model name.
Using algorithm or tool voting-classifier.
Model characteristics are: {'Examination': 'CTLFireability', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': True, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': True, 'Source Place': False, 'Sink Place': False, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': False, 'Conservative': True, 'Sub-Conservative': True, 'Nested Units': False, 'Safe': None, 'Deadlock': False, 'Reversible': None, 'Quasi Live': True, 'Live': True}.
/usr/local/lib/python3.6/dist-packages/sklearn/preprocessing/label.py:151: DeprecationWarning: The truth value of an empty array is ambiguous. Returning False, but in future this will result in an error. Use `array.size > 0` to check that an array is not empty.
if diff:
Known tools are: [{'Time': 971969, 'Memory': 15944.6, 'Tool': 'lola'}, {'Time': 1004273, 'Memory': 15947.63, 'Tool': 'lola'}].
Learned tools are: [{'Tool': 'lola'}].
Learned tool lola is 1.0x far from the best tool lola.
CTLFireability lola CircadianClock-PT-010000...

Time: 3600 - MCC
----- Start make prepare stdout -----
----- Start make prepare stderr -----
===========================================================================================
CircadianClock-PT-010000: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete


checking for too many tokens
===========================================================================================
CircadianClock-PT-010000: translating PT formula CTLFireability into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stdout -----
----- Start make result stderr -----
CTLFireability @ CircadianClock-PT-010000 @ 3540 seconds
make: [verify] Error 134 (ignored)
Makefile:222: recipe for target 'verify' failed
----- Start make result stderr -----
----- Start make result stdout -----
lola: LoLA will run for 3540 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 30/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 14 places, 16 transitions, 7 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 26 transition conflict sets
lola: TASK
lola: reading formula from CircadianClock-PT-010000-CTLFireability.task
lola: A (G (E (F (A (F (FIREABLE(rel_r))))))) : A (G (NOT(NOT(E (F (FIREABLE(bind_a))))))) : E (F (((A (G (FIREABLE(deg_mr))) AND (NOT FIREABLE(deg_a) AND NOT FIREABLE(deg_c))) AND FIREABLE(deactive)))) : E (F (A (X ((FIREABLE(deg_a) AND FIREABLE(bind_r) AND FIREABLE(deg_ma)))))) : A (F (E (F (())))) : A (F (E ((NOT FIREABLE(transl_a) U NOT FIREABLE(transc_da))))) : A (G (A (G (E (F (FIREABLE(transc_dr_a))))))) : FIREABLE(deg_r) : ((FIREABLE(transc_dr) AND NOT(E (F ((FIREABLE(transc_dr) AND FIREABLE(deg_c)))))) OR (() AND (E ((FIREABLE(transc_da_a) U FIREABLE(deg_mr))) AND A (X (FIREABLE(bind_r)))))) : (A (X (NOT FIREABLE(transc_da))) AND A (X ((A (G (FIREABLE(deg_r))) OR FIREABLE(rel_a))))) : FIREABLE(deg_r) : ((FIREABLE(rel_r) AND FIREABLE(transl_a)) OR FIREABLE(transl_r)) : (A ((NOT FIREABLE(transc_dr) U FIREABLE(transl_r))) AND FIREABLE(rel_a)) : A (((NOT FIREABLE(deactive) OR (FIREABLE(transl_a) AND FIREABLE(transc_dr) AND (FIREABLE(transl_r) OR FIREABLE(transc_da_a)))) U A (G (FIREABLE(deactive))))) : (FIREABLE(bind_a) OR NOT((E (F (FIREABLE(bind_a))) AND NOT(A (G (FIREABLE(transc_dr))))))) : A (F (NOT FIREABLE(transc_da)))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (E (F (A (F (FIREABLE(rel_r)))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: NOT(E(TRUE U NOT(E(TRUE U A(TRUE U FIREABLE(rel_r))))))
lola: processed formula length: 55
lola: 3 rewrites
lola: formula mentions 0 of 14 places; total mentions: 0
lola: closed formula file CircadianClock-PT-010000-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 28 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 3 significant temporal operators and needs 13 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: 1445463 markings, 5045827 edges, 3689348869717491712 markings/sec, 0 secs
lola: 2810324 markings, 9831153 edges, 272972 markings/sec, 5 secs
lola: 4143985 markings, 14495024 edges, 266732 markings/sec, 10 secs
lola: 5469985 markings, 19121354 edges, 265200 markings/sec, 15 secs
lola: 6814297 markings, 23846844 edges, 268862 markings/sec, 20 secs
lola: 8039533 markings, 28137728 edges, 245047 markings/sec, 25 secs
lola: 9232530 markings, 32309655 edges, 238599 markings/sec, 30 secs
lola: 10340739 markings, 36192439 edges, 221642 markings/sec, 35 secs
lola: 11575298 markings, 40510611 edges, 246912 markings/sec, 40 secs
lola: 12771278 markings, 44692023 edges, 239196 markings/sec, 45 secs
lola: 13951396 markings, 48815788 edges, 236024 markings/sec, 50 secs
lola: 15094105 markings, 52825664 edges, 228542 markings/sec, 55 secs
lola: 16318361 markings, 57112626 edges, 244851 markings/sec, 60 secs
lola: 17551756 markings, 61425357 edges, 246679 markings/sec, 65 secs
lola: 18741099 markings, 65593458 edges, 237869 markings/sec, 70 secs
lola: 19880787 markings, 69582152 edges, 227938 markings/sec, 75 secs
lola: 21118662 markings, 73913589 edges, 247575 markings/sec, 80 secs
lola: 22463834 markings, 78619453 edges, 269034 markings/sec, 85 secs
lola: 23754645 markings, 83137389 edges, 258162 markings/sec, 90 secs
lola: 24952496 markings, 87315443 edges, 239570 markings/sec, 95 secs
lola: 26166841 markings, 91573384 edges, 242869 markings/sec, 100 secs
lola: 27370921 markings, 95777765 edges, 240816 markings/sec, 105 secs
lola: 28552856 markings, 99928875 edges, 236387 markings/sec, 110 secs
lola: 29692970 markings, 103916774 edges, 228023 markings/sec, 115 secs
lola: 30737099 markings, 107576858 edges, 208826 markings/sec, 120 secs
lola: 32039618 markings, 112136870 edges, 260504 markings/sec, 125 secs
lola: 33265480 markings, 116423798 edges, 245172 markings/sec, 130 secs
lola: 34479203 markings, 120675085 edges, 242745 markings/sec, 135 secs
lola: 35639840 markings, 124737574 edges, 232127 markings/sec, 140 secs
lola: 36820527 markings, 128870267 edges, 236137 markings/sec, 145 secs
lola: 37893790 markings, 132608892 edges, 214653 markings/sec, 150 secs
lola: 38945440 markings, 136305179 edges, 210330 markings/sec, 155 secs
lola: 40010975 markings, 140020979 edges, 213107 markings/sec, 160 secs
lola: 41104897 markings, 143865176 edges, 218784 markings/sec, 165 secs
lola: 42432703 markings, 148493311 edges, 265561 markings/sec, 170 secs
lola: 43617032 markings, 152655946 edges, 236866 markings/sec, 175 secs
lola: 44834484 markings, 156900542 edges, 243490 markings/sec, 180 secs
lola: 46014602 markings, 161028769 edges, 236024 markings/sec, 185 secs
lola: 47234724 markings, 165304900 edges, 244024 markings/sec, 190 secs
lola: 48374838 markings, 169300694 edges, 228023 markings/sec, 195 secs
lola: 49514952 markings, 173283891 edges, 228023 markings/sec, 200 secs
lola: 50581840 markings, 177034831 edges, 213378 markings/sec, 205 secs
lola: 51742128 markings, 181095922 edges, 232058 markings/sec, 210 secs
lola: 52958193 markings, 185350122 edges, 243213 markings/sec, 215 secs
lola: local time limit reached - aborting
lola: Child process aborted or communication problem between parent and child process
terminate called after throwing an instance of 'std::runtime_error'
what(): parse error at position 0: unexpected character, last read: '\ufffd'
Aborted (core dumped)
----- Kill lola and sara stderr -----
FORMULA CircadianClock-PT-010000-CTLFireability-0 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-1 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-2 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-3 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-4 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-5 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-6 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-7 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-8 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-9 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-10 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-11 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-12 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-13 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-14 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA CircadianClock-PT-010000-CTLFireability-15 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stdout -----
----- Finished stdout -----
----- Finished stderr -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="CircadianClock-PT-010000"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="irma4mcc-full"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/CircadianClock-PT-010000.tgz
mv CircadianClock-PT-010000 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool irma4mcc-full"
echo " Input is CircadianClock-PT-010000, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r030-ebro-152646308700508"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;