Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
................................................................................................
/home/mcc/execution
total 204K
-rw-r--r-- 1 mcc users 4.0K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 16K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:49 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:49 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.0K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.3K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 109 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 347 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.7K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:49 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:49 instance
-rw-r--r-- 1 mcc users 6 May 15 18:49 iscolored
-rw-r--r-- 1 mcc users 33K May 15 18:49 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool mcc4mcc-full
Input is Angiogenesis-PT-25, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r022-qhx1-152646247200041
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-25-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1526885923193


BK_STOP 1526886214949

--------------------
content from stderr:

Prefix is 65b80f64.
Reading known information in /usr/share/mcc4mcc/65b80f64-known.json.
Reading learned information in /usr/share/mcc4mcc/65b80f64-learned.json.
Reading value translations in /usr/share/mcc4mcc/65b80f64-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using Angiogenesis-PT-25 as instance name.
Using Angiogenesis as model name.
Using algorithm or tool bmdt.
Model characteristics are: {'Examination': 'ReachabilityDeadlock', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': True, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': False, 'Source Place': False, 'Sink Place': True, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': True, 'Conservative': False, 'Sub-Conservative': False, 'Nested Units': False, 'Safe': None, 'Deadlock': True, 'Reversible': False, 'Quasi Live': False, 'Live': False}.
Known tools are: [{'Time': 70392, 'Memory': 2609.95, 'Tool': 'lola'}, {'Time': 89912, 'Memory': 2871.63, 'Tool': 'lola'}, {'Time': 601744, 'Memory': 6163.1, 'Tool': 'itstools'}, {'Time': 602952, 'Memory': 5851.5, 'Tool': 'itstools'}].
Learned tools are: [{'Tool': 'lola'}].
Learned tool lola is 1.0x far from the best tool lola.
ReachabilityDeadlock lola Angiogenesis-PT-25...
----- Start make prepare stderr -----

Time: 3600 - MCC
----- Start make prepare stdout -----
===========================================================================================
Angiogenesis-PT-25: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete


checking for too many tokens
===========================================================================================
Angiogenesis-PT-25: translating PT formula ReachabilityDeadlock into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stdout -----
----- Start make result stderr -----
ReachabilityDeadlock @ Angiogenesis-PT-25 @ 3538 seconds
----- Start make result stderr -----
----- Start make result stdout -----
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 103/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 39 places, 64 transitions, 31 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 54 transition conflict sets
lola: TASK
lola: reading formula from Angiogenesis-PT-25-ReachabilityDeadlock.task
lola: E (F (DEADLOCK))
lola: E (F (DEADLOCK))
lola: checking reachability of deadlocks
lola: Planning: workflow for deadlock check: siphon||findpath||search) (--findpath=par,--siphontrap=par)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using deadlock preserving stubborn set method with insertion algorithm(--stubborn=tarjan)
lola: SEARCH (findpath)
lola: findpath: using deadlock preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: findpath: starting randomized, memory-less exploration (--search=findpath)
lola: findpath: searching for paths with maximal depth 1000000 (--depthlimit)
lola: findpath: no retry limit given (--retrylimit)
lola: findpath: transitions are chosen randomly
lola: computing symmetries (--symmetry)
lola: time limit for symmetry computation of 300 seconds given (--symmtimelimit)
lola: computed 0 generators (0 in search tree, 0 by composition)
lola: representing 1 symmetries
lola: 0 dead branches visited in search tree
lola: STP: formula with 1263 variables and 3915 clauses shipped to Minisat
lola: stp: The siphon/trap property does not hold
lola: STP completed || 2 tries, 1199106 fired transitions, 0 secs || 662591 markings, 1162884 edges, 132518 markings/sec, 0 secs
lola: STP completed || 3 tries, 2642244 fired transitions, 5 secs || 1413597 markings, 2530209 edges, 150201 markings/sec, 5 secs
lola: STP completed || 5 tries, 4297747 fired transitions, 10 secs || 2150565 markings, 3881465 edges, 147394 markings/sec, 10 secs
lola: STP completed || 6 tries, 5902268 fired transitions, 15 secs || 2861220 markings, 5214659 edges, 142131 markings/sec, 15 secs
lola: STP completed || 8 tries, 7611553 fired transitions, 20 secs || 3562891 markings, 6513732 edges, 140334 markings/sec, 20 secs
lola: STP completed || 9 tries, 8944332 fired transitions, 25 secs || 4168523 markings, 7652468 edges, 121126 markings/sec, 25 secs
lola: STP completed || 11 tries, 10149787 fired transitions, 30 secs || 4709290 markings, 8673798 edges, 108153 markings/sec, 30 secs
lola: STP completed || 12 tries, 11437685 fired transitions, 35 secs || 5247559 markings, 9692531 edges, 107654 markings/sec, 35 secs
lola: STP completed || 13 tries, 12669593 fired transitions, 40 secs || 5787708 markings, 10715396 edges, 108030 markings/sec, 40 secs
lola: STP completed || 14 tries, 13880200 fired transitions, 45 secs || 6324039 markings, 11740348 edges, 107266 markings/sec, 45 secs
lola: STP completed || 16 tries, 15108367 fired transitions, 50 secs || 6859492 markings, 12763303 edges, 107091 markings/sec, 50 secs
lola: STP completed || 17 tries, 16280587 fired transitions, 55 secs || 7401917 markings, 13800181 edges, 108485 markings/sec, 55 secs
lola: STP completed || 18 tries, 17501245 fired transitions, 60 secs || 7939137 markings, 14824584 edges, 107444 markings/sec, 60 secs
lola: STP completed || 19 tries, 18770734 fired transitions, 65 secs || 8513144 markings, 15928215 edges, 114801 markings/sec, 65 secs
lola: STP completed || 21 tries, 20462546 fired transitions, 70 secs || 9185666 markings, 17227547 edges, 134504 markings/sec, 70 secs
lola: STP completed || 23 tries, 22137965 fired transitions, 75 secs || 9857151 markings, 18527541 edges, 134297 markings/sec, 75 secs
lola: STP completed || 24 tries, 23690312 fired transitions, 80 secs || 10532034 markings, 19832764 edges, 134977 markings/sec, 80 secs
lola: STP completed || 26 tries, 25254623 fired transitions, 85 secs || 11198255 markings, 21114921 edges, 133244 markings/sec, 85 secs
lola: STP completed || 28 tries, 27125992 fired transitions, 90 secs || 11861218 markings, 22404154 edges, 132593 markings/sec, 90 secs
lola: STP completed || 29 tries, 28645040 fired transitions, 95 secs || 12530855 markings, 23694602 edges, 133927 markings/sec, 95 secs
lola: STP completed || 30 tries, 29983124 fired transitions, 100 secs || 13093716 markings, 24788721 edges, 112572 markings/sec, 100 secs
lola: STP completed || 32 tries, 31348496 fired transitions, 105 secs || 13614097 markings, 25802735 edges, 104076 markings/sec, 105 secs
lola: STP completed || 33 tries, 32560828 fired transitions, 110 secs || 14128582 markings, 26800969 edges, 102897 markings/sec, 110 secs
lola: STP completed || 35 tries, 34299304 fired transitions, 115 secs || 14635746 markings, 27775135 edges, 101433 markings/sec, 115 secs
lola: STP completed || 36 tries, 35483366 fired transitions, 120 secs || 15158067 markings, 28792649 edges, 104464 markings/sec, 120 secs
lola: STP completed || 37 tries, 36794182 fired transitions, 125 secs || 15672921 markings, 29795600 edges, 102971 markings/sec, 125 secs
lola: STP completed || 39 tries, 38735438 fired transitions, 130 secs || 16179937 markings, 30780728 edges, 101403 markings/sec, 130 secs
lola: STP completed || 41 tries, 40190623 fired transitions, 135 secs || 16699004 markings, 31800129 edges, 103813 markings/sec, 135 secs
lola: STP completed || 42 tries, 41389618 fired transitions, 140 secs || 17220295 markings, 32821877 edges, 104258 markings/sec, 140 secs
lola: STP completed || 43 tries, 42685607 fired transitions, 145 secs || 17739362 markings, 33839341 edges, 103813 markings/sec, 145 secs
lola: STP completed || 44 tries, 43930077 fired transitions, 150 secs || 18258693 markings, 34861251 edges, 103866 markings/sec, 150 secs
lola: STP completed || 46 tries, 45244019 fired transitions, 155 secs || 18775539 markings, 35878747 edges, 103369 markings/sec, 155 secs
lola: STP completed || 47 tries, 46500487 fired transitions, 160 secs || 19300091 markings, 36910559 edges, 104910 markings/sec, 160 secs
lola: STP completed || 49 tries, 48081061 fired transitions, 165 secs || 19814783 markings, 37929377 edges, 102938 markings/sec, 165 secs
lola: STP completed || 50 tries, 49297110 fired transitions, 170 secs || 20338708 markings, 38967134 edges, 104785 markings/sec, 170 secs
lola: STP completed || 51 tries, 50549002 fired transitions, 175 secs || 20856451 markings, 39993485 edges, 103549 markings/sec, 175 secs
lola: STP completed || 52 tries, 51782112 fired transitions, 180 secs || 21370140 markings, 41005325 edges, 102738 markings/sec, 180 secs
lola: STP completed || 54 tries, 53091230 fired transitions, 185 secs || 21886239 markings, 42014549 edges, 103220 markings/sec, 185 secs
lola: STP completed || 55 tries, 54795931 fired transitions, 190 secs || 22394334 markings, 43017907 edges, 101619 markings/sec, 190 secs
lola: STP completed || 57 tries, 56080193 fired transitions, 195 secs || 22911436 markings, 44052202 edges, 103420 markings/sec, 195 secs
lola: STP completed || 58 tries, 57336178 fired transitions, 200 secs || 23428706 markings, 45075966 edges, 103454 markings/sec, 200 secs
lola: STP completed || 59 tries, 58775820 fired transitions, 205 secs || 23936604 markings, 46095051 edges, 101580 markings/sec, 205 secs
lola: STP completed || 61 tries, 60247753 fired transitions, 210 secs || 24447841 markings, 47107129 edges, 102247 markings/sec, 210 secs
lola: STP completed || 62 tries, 61531702 fired transitions, 215 secs || 24958423 markings, 48127885 edges, 102116 markings/sec, 215 secs
lola: STP completed || 63 tries, 62788140 fired transitions, 220 secs || 25473098 markings, 49144633 edges, 102935 markings/sec, 220 secs
lola: STP completed || 65 tries, 64079066 fired transitions, 225 secs || 25993862 markings, 50177859 edges, 104153 markings/sec, 225 secs
lola: STP completed || 66 tries, 65357375 fired transitions, 230 secs || 26513216 markings, 51203651 edges, 103871 markings/sec, 230 secs
lola: STP completed || 67 tries, 66687042 fired transitions, 235 secs || 27025786 markings, 52230969 edges, 102514 markings/sec, 235 secs
lola: RESULT
lola: result: yes
lola: produced by: state space
lola: The net has deadlock(s).
lola: 27055763 markings, 52291567 edges
FORMULA Angiogenesis-PT-25-ReachabilityDeadlock-0 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT SAT_SMT STATE_COMPRESSION STUBBORN_SETS SYMMETRIES TOPOLOGICAL USE_NUPN
----- Kill lola and sara stdout -----
----- Kill lola and sara stderr -----
----- Finished stderr -----
----- Finished stdout -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-25"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="mcc4mcc-full"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-25.tgz
mv Angiogenesis-PT-25 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool mcc4mcc-full"
echo " Input is Angiogenesis-PT-25, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r022-qhx1-152646247200041"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;