About the Execution of ITS-Tools.L for Angiogenesis-PT-05
Execution Summary | |||||
Max Memory Used (MB) |
Time wait (ms) | CPU Usage (ms) | I/O Wait (ms) | Computed Result | Execution Status |
15777.610 | 71684.00 | 64505.00 | 2930.90 | FTFFFTFTTTTFTFFT | normal |
Execution Chart
We display below the execution chart for this examination (boot time has been removed).
Trace from the execution
Waiting for the VM to be ready (probing ssh)
.........................
/home/mcc/execution
total 204K
-rw-r--r-- 1 mcc users 3.1K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 15K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:49 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:49 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.5K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.0K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.4K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 21K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 109 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 347 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 14K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:49 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:49 instance
-rw-r--r-- 1 mcc users 6 May 15 18:49 iscolored
-rw-r--r-- 1 mcc users 33K May 15 18:49 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is Angiogenesis-PT-05, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r021-qhx1-152646246200010
=====================================================================
--------------------
content from stdout:
=== Data for post analysis generated by BenchKit (invocation template)
The expected result is a vector of booleans
BOOL_VECTOR
here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-00
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-01
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-02
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-03
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-04
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-05
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-06
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-07
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-08
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-09
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-10
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-11
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-12
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-13
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-14
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-15
=== Now, execution of the tool begins
BK_START 1527200657999
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl], workingDir=/home/mcc/execution]
its-ctl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,4.27349e+07,1.76562,38012,2,12182,5,180021,6,0,220,174759,0
Converting to forward existential form...Done !
original formula: AG(((GStarP3<=KdStarGStarP3kStarP2)||(KdStarPgStar>=3)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(((GStarP3<=KdStarGStarP3kStarP2)||(KdStarPgStar>=3))))] = FALSE
(forward)formula 0,0,1.81549,38012,1,0,8,180021,9,2,248,174759,1
FORMULA Angiogenesis-PT-05-CTLCardinality-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is FALSE !
***************************************
original formula: (EF(EX((KdStarGStarP3kStarP3P2>=2))) * !((KdStarGStarP3>=2)))
=> equivalent forward existential formula: [(EY(FwdU((Init * !((KdStarGStarP3>=2))),TRUE)) * (KdStarGStarP3kStarP3P2>=2))] != FALSE
(forward)formula 1,1,3.07364,43144,1,0,10,200435,13,3,573,211952,6
FORMULA Angiogenesis-PT-05-CTLCardinality-01 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !
***************************************
original formula: EX(E((Gab1>=3) U (KdStarGP3>=3)))
=> equivalent forward existential formula: [(FwdU(EY(Init),(Gab1>=3)) * (KdStarGP3>=3))] != FALSE
Hit Full ! (commute/partial/dont) 60/0/4
(forward)formula 2,0,3.65573,54496,1,0,15,261724,21,4,611,262974,11
FORMULA Angiogenesis-PT-05-CTLCardinality-02 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is FALSE !
***************************************
original formula: AG(((KdStarGStar<=KdStarGStarPg)||(KdStarGStarP3<=KdStarGStarP3kP3)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(((KdStarGStar<=KdStarGStarPg)||(KdStarGStarP3<=KdStarGStarP3kP3))))] = FALSE
(forward)formula 3,0,3.7341,55884,1,0,18,268862,23,6,640,272532,12
FORMULA Angiogenesis-PT-05-CTLCardinality-03 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is FALSE !
***************************************
original formula: !(EF(!(((KdStarGStarP3kStarP2<=KdStarG)||(P3k>=1)))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(((KdStarGStarP3kStarP2<=KdStarG)||(P3k>=1))))] = FALSE
(forward)formula 4,0,3.82911,57468,1,0,21,272975,25,8,657,282161,13
FORMULA Angiogenesis-PT-05-CTLCardinality-04 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is FALSE !
***************************************
original formula: AF(AG(((Pip3<=Enz)||(P3k<=Pg))))
=> equivalent forward existential formula: [FwdG(Init,!(!(E(TRUE U !(((Pip3<=Enz)||(P3k<=Pg)))))))] = FALSE
Reverse transition relation is NOT exact ! Due to transitions k2, k55, k60, k7, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :0/60/4/64
(forward)formula 5,1,9.56924,137240,1,0,91,597638,172,58,1741,544812,146
FORMULA Angiogenesis-PT-05-CTLCardinality-05 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !
***************************************
original formula: AG(E((KdStarPg>=3) U (KdStarGStarP3kP3<=KdStarGStarPgStarP2)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E((KdStarPg>=3) U (KdStarGStarP3kP3<=KdStarGStarPgStarP2))))] = FALSE
(forward)formula 6,0,11.0796,152816,1,0,106,747398,177,69,1774,685691,167
FORMULA Angiogenesis-PT-05-CTLCardinality-06 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is FALSE !
***************************************
original formula: EF((GStarP3>=1))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * (GStarP3>=1))] != FALSE
(forward)formula 7,1,11.0866,153080,1,0,107,747403,178,70,1774,685691,168
FORMULA Angiogenesis-PT-05-CTLCardinality-07 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !
***************************************
original formula: (EF((AktStar>=2)) + AF((KdStarGStarP3k>=3)))
=> equivalent forward existential formula: [FwdG((Init * !(E(TRUE U (AktStar>=2)))),!((KdStarGStarP3k>=3)))] = FALSE
(forward)formula 8,1,19.0754,254112,1,0,116,1.4087e+06,188,76,1816,1.11142e+06,180
FORMULA Angiogenesis-PT-05-CTLCardinality-08 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !
***************************************
original formula: (EF(!((GStarP3<=Akt))) * AF(AX((Pg>=3))))
=> equivalent forward existential formula: ([(Init * !(E(TRUE U !((GStarP3<=Akt)))))] = FALSE * [FwdG(Init,!(!(EX(!((Pg>=3))))))] = FALSE)
(forward)formula 9,1,28.545,370132,1,0,124,2.17076e+06,195,83,1830,1.61411e+06,195
FORMULA Angiogenesis-PT-05-CTLCardinality-09 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !
***************************************
original formula: ((KdStarGStarPgStar<=KdStar) * EF(AG((P3k<=KdStarGStarPgStarP3))))
=> equivalent forward existential formula: [(FwdU((Init * (KdStarGStarPgStar<=KdStar)),TRUE) * !(E(TRUE U !((P3k<=KdStarGStarPgStarP3)))))] != FALSE
(forward)formula 10,1,28.9428,375676,1,0,127,2.19741e+06,198,87,1844,1.63276e+06,206
FORMULA Angiogenesis-PT-05-CTLCardinality-10 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !
***************************************
original formula: EX(!(EF((AktP3>=3))))
=> equivalent forward existential formula: [(EY(Init) * !(E(TRUE U (AktP3>=3))))] != FALSE
(forward)formula 11,0,46.9482,555460,1,0,138,3.42804e+06,199,94,1845,2.42051e+06,223
FORMULA Angiogenesis-PT-05-CTLCardinality-11 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is FALSE !
***************************************
original formula: E((AktStar<=Akt) U ((Pip3>=3)&&((KdStarGStarPgP3<=P3k)||(KdStarPg>=1))))
=> equivalent forward existential formula: [(FwdU(Init,(AktStar<=Akt)) * ((Pip3>=3)&&((KdStarGStarPgP3<=P3k)||(KdStarPg>=1))))] != FALSE
Hit Full ! (commute/partial/dont) 61/0/3
(forward)formula 12,1,49.115,582652,1,0,143,3.5713e+06,207,95,1904,2.55936e+06,227
FORMULA Angiogenesis-PT-05-CTLCardinality-12 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !
***************************************
original formula: AG(((KdStar>=3)||(KdStar>=2)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(((KdStar>=3)||(KdStar>=2))))] = FALSE
(forward)formula 13,0,49.1427,582916,1,0,146,3.57358e+06,209,97,1910,2.56323e+06,228
FORMULA Angiogenesis-PT-05-CTLCardinality-13 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is FALSE !
***************************************
original formula: AG((((KdStarGStarP3kStarP3P2<=KdStarGStarP3k)||((KdStarGStarPgStar>=2)||(KdStarGStarPgStar>=1)))||(!((KdStarGP3>=1)||(GStarP3<=KdStarGStarP3kP3)))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !((((KdStarGStarP3kStarP3P2<=KdStarGStarP3k)||((KdStarGStarPgStar>=2)||(KdStarGStarPgStar>=1)))||(!((KdStarGP3>=1)||(GStarP3<=KdStarGStarP3kP3))))))] = FALSE
(forward)formula 14,0,49.3796,586076,1,0,149,3.58672e+06,211,99,1947,2.58186e+06,229
FORMULA Angiogenesis-PT-05-CTLCardinality-14 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is FALSE !
***************************************
original formula: (KdStarGStarP3kStarP3P2<=KdStarGP3)
=> equivalent forward existential formula: [(Init * (KdStarGStarP3kStarP3P2<=KdStarGP3))] != FALSE
(forward)formula 15,1,49.3869,586340,1,0,149,3.58672e+06,212,99,1949,2.58186e+06,230
FORMULA Angiogenesis-PT-05-CTLCardinality-15 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !
***************************************
BK_STOP 1527200729683
--------------------
content from stderr:
+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 24, 2018 10:24:37 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 24, 2018 10:24:37 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 24, 2018 10:24:38 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 67 ms
May 24, 2018 10:24:38 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 39 places.
May 24, 2018 10:24:38 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 64 transitions.
May 24, 2018 10:24:38 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 13 ms
May 24, 2018 10:24:38 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 94 ms
May 24, 2018 10:24:38 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 3 ms
May 24, 2018 10:24:38 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 2 ms
Sequence of Actions to be Executed by the VM
This is useful if one wants to reexecute the tool in the VM from the submitted image disk.
set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-05"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
# this is specific to your benchmark or test
export BIN_DIR="$HOME/BenchKit/bin"
# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi
tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-05.tgz
mv Angiogenesis-PT-05 execution
cd execution
pwd
ls -lh
# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is Angiogenesis-PT-05, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r021-qhx1-152646246200010"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;