Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.............................................
/home/mcc/execution
total 204K
-rw-r--r-- 1 mcc users 4.0K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 16K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:49 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:49 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.0K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.3K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 109 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 347 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.7K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:49 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:49 instance
-rw-r--r-- 1 mcc users 6 May 15 18:49 iscolored
-rw-r--r-- 1 mcc users 33K May 15 18:49 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool irma4mcc-structural
Input is Angiogenesis-PT-25, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r019-qhx1-152646243500041
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-25-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1526800845225


BK_STOP 1526801078584

--------------------
content from stderr:

Prefix is 75f5f979.
Reading known information in /usr/share/mcc4mcc/75f5f979-known.json.
Reading learned information in /usr/share/mcc4mcc/75f5f979-learned.json.
Reading value translations in /usr/share/mcc4mcc/75f5f979-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using Angiogenesis-PT-25 as instance name.
Using Angiogenesis as model name.
Using algorithm or tool decision-tree.
Model characteristics are: {'Examination': 'ReachabilityDeadlock', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': True, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': False, 'Source Place': False, 'Sink Place': True, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': True, 'Conservative': False, 'Sub-Conservative': False, 'Nested Units': False, 'Safe': None, 'Deadlock': True, 'Reversible': False, 'Quasi Live': False, 'Live': False}.
Known tools are: [{'Time': 70392, 'Memory': 2609.95, 'Tool': 'lola'}, {'Time': 89912, 'Memory': 2871.63, 'Tool': 'lola'}, {'Time': 601744, 'Memory': 6163.1, 'Tool': 'itstools'}, {'Time': 602952, 'Memory': 5851.5, 'Tool': 'itstools'}].
Learned tools are: [{'Tool': 'gspn'}].
ReachabilityDeadlock lola Angiogenesis-PT-25...

Time: 3600 - MCC
----- Start make prepare stdout -----
----- Start make prepare stderr -----
===========================================================================================
Angiogenesis-PT-25: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete


checking for too many tokens
===========================================================================================
Angiogenesis-PT-25: translating PT formula ReachabilityDeadlock into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stderr -----
----- Start make result stdout -----
ReachabilityDeadlock @ Angiogenesis-PT-25 @ 3538 seconds
----- Start make result stderr -----
----- Start make result stdout -----
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 103/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 39 places, 64 transitions, 31 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 54 transition conflict sets
lola: TASK
lola: reading formula from Angiogenesis-PT-25-ReachabilityDeadlock.task
lola: E (F (DEADLOCK))
lola: E (F (DEADLOCK))
lola: checking reachability of deadlocks
lola: Planning: workflow for deadlock check: siphon||findpath||search) (--findpath=par,--siphontrap=par)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using deadlock preserving stubborn set method with insertion algorithm(--stubborn=tarjan)
lola: SEARCH (findpath)
lola: findpath: using deadlock preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: findpath: starting randomized, memory-less exploration (--search=findpath)
lola: findpath: searching for paths with maximal depth 1000000 (--depthlimit)
lola: findpath: no retry limit given (--retrylimit)
lola: findpath: transitions are chosen randomly
lola: computing symmetries (--symmetry)
lola: time limit for symmetry computation of 300 seconds given (--symmtimelimit)
lola: computed 0 generators (0 in search tree, 0 by composition)
lola: representing 1 symmetries
lola: 0 dead branches visited in search tree
lola: STP: formula with 1263 variables and 3915 clauses shipped to Minisat
lola: stp: The siphon/trap property does not hold
lola: STP completed || 2 tries, 1507637 fired transitions, 0 secs || 644437 markings, 1132641 edges, 128887 markings/sec, 0 secs
lola: STP completed || 4 tries, 3261344 fired transitions, 5 secs || 1350041 markings, 2412654 edges, 141121 markings/sec, 5 secs
lola: STP completed || 6 tries, 5302594 fired transitions, 10 secs || 2034494 markings, 3666073 edges, 136891 markings/sec, 10 secs
lola: STP completed || 7 tries, 6541877 fired transitions, 15 secs || 2627073 markings, 4760460 edges, 118516 markings/sec, 15 secs
lola: STP completed || 8 tries, 7909976 fired transitions, 20 secs || 3180377 markings, 5774827 edges, 110661 markings/sec, 20 secs
lola: STP completed || 10 tries, 9691147 fired transitions, 25 secs || 3731604 markings, 6799343 edges, 110245 markings/sec, 25 secs
lola: STP completed || 11 tries, 10868298 fired transitions, 30 secs || 4283629 markings, 7835672 edges, 110405 markings/sec, 30 secs
lola: STP completed || 13 tries, 12432997 fired transitions, 35 secs || 4821863 markings, 8846278 edges, 107647 markings/sec, 35 secs
lola: STP completed || 14 tries, 13626467 fired transitions, 40 secs || 5361601 markings, 9864802 edges, 107948 markings/sec, 40 secs
lola: STP completed || 15 tries, 14819227 fired transitions, 45 secs || 5904019 markings, 10890727 edges, 108484 markings/sec, 45 secs
lola: STP completed || 17 tries, 16068272 fired transitions, 50 secs || 6440780 markings, 11907957 edges, 107352 markings/sec, 50 secs
lola: STP completed || 18 tries, 17247160 fired transitions, 55 secs || 6976965 markings, 12939823 edges, 107237 markings/sec, 55 secs
lola: STP completed || 19 tries, 18532921 fired transitions, 60 secs || 7535520 markings, 14006322 edges, 111711 markings/sec, 60 secs
lola: STP completed || 21 tries, 20060067 fired transitions, 65 secs || 8214661 markings, 15317743 edges, 135828 markings/sec, 65 secs
lola: STP completed || 22 tries, 21477787 fired transitions, 70 secs || 8739632 markings, 16323178 edges, 104994 markings/sec, 70 secs
lola: STP completed || 23 tries, 22771644 fired transitions, 75 secs || 9318828 markings, 17439347 edges, 115839 markings/sec, 75 secs
lola: STP completed || 25 tries, 24081095 fired transitions, 80 secs || 9847889 markings, 18451421 edges, 105812 markings/sec, 80 secs
lola: STP completed || 26 tries, 25364010 fired transitions, 85 secs || 10375051 markings, 19467557 edges, 105432 markings/sec, 85 secs
lola: STP completed || 27 tries, 26789824 fired transitions, 90 secs || 10901283 markings, 20486775 edges, 105246 markings/sec, 90 secs
lola: STP completed || 29 tries, 28254191 fired transitions, 95 secs || 11428121 markings, 21500007 edges, 105368 markings/sec, 95 secs
lola: STP completed || 30 tries, 29950451 fired transitions, 100 secs || 11951769 markings, 22513509 edges, 104730 markings/sec, 100 secs
lola: STP completed || 32 tries, 31296999 fired transitions, 105 secs || 12483321 markings, 23535921 edges, 106310 markings/sec, 105 secs
lola: STP completed || 33 tries, 32859101 fired transitions, 110 secs || 13003186 markings, 24548089 edges, 103973 markings/sec, 110 secs
lola: STP completed || 35 tries, 34542933 fired transitions, 115 secs || 13554750 markings, 25619146 edges, 110313 markings/sec, 115 secs
lola: STP completed || 36 tries, 35836928 fired transitions, 120 secs || 14080768 markings, 26636367 edges, 105204 markings/sec, 120 secs
lola: STP completed || 38 tries, 37126275 fired transitions, 125 secs || 14601412 markings, 27655572 edges, 104129 markings/sec, 125 secs
lola: STP completed || 39 tries, 38598232 fired transitions, 130 secs || 15121567 markings, 28669177 edges, 104031 markings/sec, 130 secs
lola: STP completed || 41 tries, 40362765 fired transitions, 135 secs || 15778623 markings, 29956911 edges, 131411 markings/sec, 135 secs
lola: STP completed || 43 tries, 42501431 fired transitions, 140 secs || 16437510 markings, 31235274 edges, 131777 markings/sec, 140 secs
lola: STP completed || 45 tries, 44178438 fired transitions, 145 secs || 16981046 markings, 32299759 edges, 108707 markings/sec, 145 secs
lola: STP completed || 46 tries, 45610524 fired transitions, 150 secs || 17521974 markings, 33354054 edges, 108186 markings/sec, 150 secs
lola: STP completed || 48 tries, 47272070 fired transitions, 155 secs || 18170251 markings, 34642340 edges, 129655 markings/sec, 155 secs
lola: STP completed || 49 tries, 48752321 fired transitions, 160 secs || 18822370 markings, 35919071 edges, 130424 markings/sec, 160 secs
lola: STP completed || 51 tries, 50395725 fired transitions, 165 secs || 19460115 markings, 37169743 edges, 127549 markings/sec, 165 secs
lola: STP completed || 53 tries, 52290205 fired transitions, 170 secs || 20114199 markings, 38461168 edges, 130817 markings/sec, 170 secs
lola: RESULT
lola: result: yes
lola: produced by: state space
lola: The net has deadlock(s).
lola: 20597478 markings, 39414822 edges
FORMULA Angiogenesis-PT-25-ReachabilityDeadlock-0 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT SAT_SMT STATE_COMPRESSION STUBBORN_SETS SYMMETRIES TOPOLOGICAL USE_NUPN
----- Kill lola and sara stderr -----
----- Kill lola and sara stdout -----
----- Finished stderr -----
----- Finished stdout -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-25"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="irma4mcc-structural"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-25.tgz
mv Angiogenesis-PT-25 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool irma4mcc-structural"
echo " Input is Angiogenesis-PT-25, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r019-qhx1-152646243500041"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;