Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...................................................................................................
/home/mcc/execution
total 204K
-rw-r--r-- 1 mcc users 4.0K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 16K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:49 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:49 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.0K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.3K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 109 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 347 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.7K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:49 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:49 instance
-rw-r--r-- 1 mcc users 6 May 15 18:49 iscolored
-rw-r--r-- 1 mcc users 33K May 15 18:49 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool irma4mcc-structural
Input is Angiogenesis-PT-25, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r019-qhx1-152646243500037
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-00
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-01
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-02
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-03
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-04
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-05
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-06
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-07
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-08
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-09
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-10
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-11
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-12
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-13
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-14
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-15

=== Now, execution of the tool begins

BK_START 1526800548895


BK_STOP 1526800782058

--------------------
content from stderr:

Prefix is 75f5f979.
Reading known information in /usr/share/mcc4mcc/75f5f979-known.json.
Reading learned information in /usr/share/mcc4mcc/75f5f979-learned.json.
Reading value translations in /usr/share/mcc4mcc/75f5f979-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using Angiogenesis-PT-25 as instance name.
Using Angiogenesis as model name.
Using algorithm or tool random-forest.
Model characteristics are: {'Examination': 'UpperBounds', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': True, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': False, 'Source Place': False, 'Sink Place': True, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': True, 'Conservative': False, 'Sub-Conservative': False, 'Nested Units': False, 'Safe': None, 'Deadlock': True, 'Reversible': False, 'Quasi Live': False, 'Live': False}.
Known tools are: [{'Time': 3540131, 'Memory': 9609.28, 'Tool': 'lola'}, {'Time': 3540258, 'Memory': 9645.39, 'Tool': 'lola'}].
Learned tools are: [{'Tool': 'gspn'}].
UpperBounds lola Angiogenesis-PT-25...
----- Start make prepare stderr -----

Time: 3600 - MCC
----- Start make prepare stdout -----
===========================================================================================
Angiogenesis-PT-25: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete


checking for too many tokens
===========================================================================================
Angiogenesis-PT-25: translating PT formula UpperBounds into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stdout -----
----- Start make result stderr -----
UpperBounds @ Angiogenesis-PT-25 @ 3538 seconds
make: [verify] Error 134 (ignored)
----- Start make result stderr -----
Makefile:222: recipe for target 'verify' failed
----- Start make result stdout -----
lola: LoLA will run for 3538 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 103/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 39 places, 64 transitions, 31 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 54 transition conflict sets
lola: TASK
lola: reading formula from Angiogenesis-PT-25-UpperBounds.task
lola: MAX(PtP3) : MAX(PtP3P2) : MAX(KdStarGStarPgStarP2) : MAX(KdStarGStarP3kP3) : MAX(PtP3) : MAX(AktP3) : MAX(KdStarGStarP3kStar) : MAX(PtP3P2) : MAX(KdStarGStarP3kStar) : MAX(KdStarGStarP3k) : MAX(KdStarGStar) : MAX(GP3) : MAX(Pg) : MAX(KdStarGStarPgStar) : MAX(PtP2) : MAX(Gab1)
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: MAX(PtP3)
lola: ========================================
lola: SUBTASK
lola: computing bound of an expression
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: using bound preserving stubborn set method with insertion algorithm(--stubborn=tarjan)
lola: RUNNING
lola: 782040 markings, 1450897 edges, 156408 markings/sec, 0 secs
lola: 1524687 markings, 2819436 edges, 148529 markings/sec, 5 secs
lola: 2271491 markings, 4188132 edges, 149361 markings/sec, 10 secs
lola: 3023741 markings, 5576297 edges, 150450 markings/sec, 15 secs
lola: 3777045 markings, 6966540 edges, 150661 markings/sec, 20 secs
lola: 4526761 markings, 8357219 edges, 149943 markings/sec, 25 secs
lola: 5276780 markings, 9746922 edges, 150004 markings/sec, 30 secs
lola: 6023487 markings, 11129779 edges, 149341 markings/sec, 35 secs
lola: 6753774 markings, 12491933 edges, 146057 markings/sec, 40 secs
lola: 7487164 markings, 13857006 edges, 146678 markings/sec, 45 secs
lola: 8220564 markings, 15225691 edges, 146680 markings/sec, 50 secs
lola: 8954191 markings, 16592283 edges, 146725 markings/sec, 55 secs
lola: 9691986 markings, 17959718 edges, 147559 markings/sec, 60 secs
lola: 10421430 markings, 19319589 edges, 145889 markings/sec, 65 secs
lola: 11156864 markings, 20684616 edges, 147087 markings/sec, 70 secs
lola: 11883294 markings, 22039486 edges, 145286 markings/sec, 75 secs
lola: 12609794 markings, 23395427 edges, 145300 markings/sec, 80 secs
lola: 13333289 markings, 24744063 edges, 144699 markings/sec, 85 secs
lola: 14065684 markings, 26101362 edges, 146479 markings/sec, 90 secs
lola: 14794831 markings, 27455283 edges, 145829 markings/sec, 95 secs
lola: 15511632 markings, 28799774 edges, 143360 markings/sec, 100 secs
lola: 16222095 markings, 30128960 edges, 142093 markings/sec, 105 secs
lola: 16943546 markings, 31475488 edges, 144290 markings/sec, 110 secs
lola: 17641535 markings, 32780991 edges, 139598 markings/sec, 115 secs
lola: 18340592 markings, 34091805 edges, 139811 markings/sec, 120 secs
lola: 19040474 markings, 35395671 edges, 139976 markings/sec, 125 secs
lola: 19722313 markings, 36684457 edges, 136368 markings/sec, 130 secs
lola: 20431893 markings, 38007841 edges, 141916 markings/sec, 135 secs
lola: 21135873 markings, 39329153 edges, 140796 markings/sec, 140 secs
lola: 21846715 markings, 40659114 edges, 142168 markings/sec, 145 secs
lola: 22563896 markings, 41988577 edges, 143436 markings/sec, 150 secs
lola: 23276473 markings, 43315834 edges, 142515 markings/sec, 155 secs
lola: 23984428 markings, 44640888 edges, 141591 markings/sec, 160 secs
lola: 24698335 markings, 45972246 edges, 142781 markings/sec, 165 secs
lola: 25407572 markings, 47298737 edges, 141847 markings/sec, 170 secs
lola: 26095609 markings, 48580735 edges, 137607 markings/sec, 175 secs
lola: 26781648 markings, 49869542 edges, 137208 markings/sec, 180 secs
lola: 27460767 markings, 51149432 edges, 135824 markings/sec, 185 secs
lola: 28126302 markings, 52403641 edges, 133107 markings/sec, 190 secs
lola: 28805105 markings, 53671161 edges, 135761 markings/sec, 195 secs
lola: 29491118 markings, 54961615 edges, 137203 markings/sec, 200 secs
lola: 30191616 markings, 56269885 edges, 140100 markings/sec, 205 secs
lola: 30888583 markings, 57582371 edges, 139393 markings/sec, 210 secs
lola: 31589647 markings, 58894860 edges, 140213 markings/sec, 215 secs
lola: local time limit reached - aborting
lola: Child process aborted or communication problem between parent and child process
terminate called after throwing an instance of 'std::runtime_error'
what(): parse error at position 0: unexpected character, last read: ''
Aborted (core dumped)
FORMULA Angiogenesis-PT-25-UpperBounds-0 CANNOT_COMPUTE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS USE_NUPN
FORMULA Angiogenesis-PT-25-UpperBounds-1 CANNOT_COMPUTE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS USE_NUPN
FORMULA Angiogenesis-PT-25-UpperBounds-2 CANNOT_COMPUTE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS USE_NUPN
FORMULA Angiogenesis-PT-25-UpperBounds-3 CANNOT_COMPUTE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS USE_NUPN
FORMULA Angiogenesis-PT-25-UpperBounds-4 CANNOT_COMPUTE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS USE_NUPN
FORMULA Angiogenesis-PT-25-UpperBounds-5 CANNOT_COMPUTE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS USE_NUPN
FORMULA Angiogenesis-PT-25-UpperBounds-6 CANNOT_COMPUTE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS USE_NUPN
FORMULA Angiogenesis-PT-25-UpperBounds-7 CANNOT_COMPUTE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS USE_NUPN
FORMULA Angiogenesis-PT-25-UpperBounds-8 CANNOT_COMPUTE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS USE_NUPN
FORMULA Angiogenesis-PT-25-UpperBounds-9 CANNOT_COMPUTE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS USE_NUPN
FORMULA Angiogenesis-PT-25-UpperBounds-10 CANNOT_COMPUTE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS USE_NUPN
FORMULA Angiogenesis-PT-25-UpperBounds-11 CANNOT_COMPUTE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS USE_NUPN
FORMULA Angiogenesis-PT-25-UpperBounds-12 CANNOT_COMPUTE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS USE_NUPN
FORMULA Angiogenesis-PT-25-UpperBounds-13 CANNOT_COMPUTE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS USE_NUPN
FORMULA Angiogenesis-PT-25-UpperBounds-14 CANNOT_COMPUTE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS USE_NUPN
FORMULA Angiogenesis-PT-25-UpperBounds-15 CANNOT_COMPUTE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS USE_NUPN
----- Kill lola and sara stderr -----
----- Kill lola and sara stdout -----
----- Finished stderr -----
----- Finished stdout -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-25"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="irma4mcc-structural"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-25.tgz
mv Angiogenesis-PT-25 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool irma4mcc-structural"
echo " Input is Angiogenesis-PT-25, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r019-qhx1-152646243500037"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;