Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..............................................................................................
/home/mcc/execution
total 196K
-rw-r--r-- 1 mcc users 3.5K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.5K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:49 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:49 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.7K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.9K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 10K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.6K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 16K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 109 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 347 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 14K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.7K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:49 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:49 instance
-rw-r--r-- 1 mcc users 6 May 15 18:49 iscolored
-rw-r--r-- 1 mcc users 33K May 15 18:49 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool irma4mcc-full
Input is Angiogenesis-PT-50, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r018-qhx1-152646242700046
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-50-CTLFireability-00
FORMULA_NAME Angiogenesis-PT-50-CTLFireability-01
FORMULA_NAME Angiogenesis-PT-50-CTLFireability-02
FORMULA_NAME Angiogenesis-PT-50-CTLFireability-03
FORMULA_NAME Angiogenesis-PT-50-CTLFireability-04
FORMULA_NAME Angiogenesis-PT-50-CTLFireability-05
FORMULA_NAME Angiogenesis-PT-50-CTLFireability-06
FORMULA_NAME Angiogenesis-PT-50-CTLFireability-07
FORMULA_NAME Angiogenesis-PT-50-CTLFireability-08
FORMULA_NAME Angiogenesis-PT-50-CTLFireability-09
FORMULA_NAME Angiogenesis-PT-50-CTLFireability-10
FORMULA_NAME Angiogenesis-PT-50-CTLFireability-11
FORMULA_NAME Angiogenesis-PT-50-CTLFireability-12
FORMULA_NAME Angiogenesis-PT-50-CTLFireability-13
FORMULA_NAME Angiogenesis-PT-50-CTLFireability-14
FORMULA_NAME Angiogenesis-PT-50-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1526764265426


BK_STOP 1526764514757

--------------------
content from stderr:

Prefix is 65b80f64.
Reading known information in /usr/share/mcc4mcc/65b80f64-known.json.
Reading learned information in /usr/share/mcc4mcc/65b80f64-learned.json.
Reading value translations in /usr/share/mcc4mcc/65b80f64-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using Angiogenesis-PT-50 as instance name.
Using Angiogenesis as model name.
Using algorithm or tool voting-classifier.
Model characteristics are: {'Examination': 'CTLFireability', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': True, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': False, 'Source Place': False, 'Sink Place': True, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': True, 'Conservative': False, 'Sub-Conservative': False, 'Nested Units': False, 'Safe': None, 'Deadlock': True, 'Reversible': False, 'Quasi Live': False, 'Live': False}.
/usr/local/lib/python3.6/dist-packages/sklearn/preprocessing/label.py:151: DeprecationWarning: The truth value of an empty array is ambiguous. Returning False, but in future this will result in an error. Use `array.size > 0` to check that an array is not empty.
if diff:
Known tools are: [{'Time': 1417649, 'Memory': 15950.01, 'Tool': 'lola'}, {'Time': 1469488, 'Memory': 15952.26, 'Tool': 'lola'}].
Learned tools are: [{'Tool': 'lola'}].
Learned tool lola is 1.0x far from the best tool lola.
CTLFireability lola Angiogenesis-PT-50...

Time: 3600 - MCC
----- Start make prepare stdout -----
----- Start make prepare stderr -----
===========================================================================================
Angiogenesis-PT-50: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete


checking for too many tokens
===========================================================================================
Angiogenesis-PT-50: translating PT formula CTLFireability into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stdout -----
----- Start make result stderr -----
CTLFireability @ Angiogenesis-PT-50 @ 3538 seconds
Makefile:222: recipe for target 'verify' failed
----- Start make result stdout -----
make: [verify] Error 134 (ignored)
----- Start make result stderr -----
lola: LoLA will run for 3538 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 103/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 39 places, 64 transitions, 31 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 54 transition conflict sets
lola: TASK
lola: reading formula from Angiogenesis-PT-50-CTLFireability.task
lola: E (F (((FIREABLE(k42) OR FIREABLE(k12)) AND A (X ((FIREABLE(k21) AND FIREABLE(k53))))))) : A (((E (X (FIREABLE(k13))) AND E (G (FIREABLE(k48)))) U E (F ((FIREABLE(k56) AND FIREABLE(k52)))))) : A (G (E (F (A (F (FIREABLE(k63))))))) : E (X (E (F (FIREABLE(k27))))) : A (G (NOT(A (X ((FIREABLE(k48) OR FIREABLE(k55))))))) : NOT(A (G ((E (F (FIREABLE(k53))) OR (FIREABLE(k7) OR FIREABLE(k55) OR FIREABLE(k13)))))) : E (G (E (F ((FIREABLE(k35) AND FIREABLE(k15) AND FIREABLE(k18)))))) : E ((NOT(A (F (FIREABLE(k40)))) U FIREABLE(k26))) : E (F ((A ((FIREABLE(k10) U FIREABLE(k53))) AND ((NOT FIREABLE(k41) OR NOT FIREABLE(k57)) AND E (G (FIREABLE(k8))))))) : ((A (G ((FIREABLE(k28) OR FIREABLE(k21) OR FIREABLE(k38)))) AND NOT((A (X (FIREABLE(k25))) OR (NOT FIREABLE(k47) OR NOT FIREABLE(k50))))) OR E (F (A (G ((FIREABLE(k28) OR FIREABLE(k15))))))) : (((((NOT FIREABLE(k48) OR NOT FIREABLE(k33)) AND E (F (FIREABLE(t0)))) OR (NOT FIREABLE(k58) AND A (F (FIREABLE(k61))))) OR FIREABLE(k59)) AND (((A (X (FIREABLE(k46))) AND (NOT FIREABLE(k10) AND NOT FIREABLE(k52))) AND (E (F (FIREABLE(k9))) AND (FIREABLE(k11) OR FIREABLE(k5) OR (FIREABLE(k56) AND FIREABLE(k43))))) OR A (G (E (F (FIREABLE(k63))))))) : E ((E (F ((FIREABLE(k24) OR FIREABLE(k18)))) U FIREABLE(k13))) : E (F ((FIREABLE(k30) AND E ((FIREABLE(k10) U FIREABLE(k43)))))) : A (G (E (((FIREABLE(k19) OR FIREABLE(k9)) U (FIREABLE(k56) OR FIREABLE(k10)))))) : NOT(NOT(A (G ((FIREABLE(k56) OR FIREABLE(k2) OR NOT FIREABLE(k34)))))) : E ((A (X (NOT FIREABLE(k49))) U (FIREABLE(k41) AND ((FIREABLE(k55) AND FIREABLE(k52)) OR (FIREABLE(k34) AND FIREABLE(k58))))))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (((FIREABLE(k42) OR FIREABLE(k12)) AND A (X ((FIREABLE(k21) AND FIREABLE(k53)))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: E(TRUE U ((FIREABLE(k42) OR FIREABLE(k12)) AND AX((FIREABLE(k21) AND FIREABLE(k53)))))
lola: processed formula length: 87
lola: 2 rewrites
lola: formula mentions 0 of 39 places; total mentions: 0
lola: closed formula file Angiogenesis-PT-50-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Formula contains EX or AX operators, stubborn sets not applicable
lola: RUNNING
lola: CTL formula contains 1 significant temporal operators and needs 5 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: 990868 markings, 1999842 edges, 3689348869717491712 markings/sec, 0 secs
lola: 1917759 markings, 3834892 edges, 185378 markings/sec, 5 secs
lola: 2800843 markings, 5636331 edges, 176617 markings/sec, 10 secs
lola: 3647300 markings, 7313891 edges, 169291 markings/sec, 15 secs
lola: 4563977 markings, 9154002 edges, 183335 markings/sec, 20 secs
lola: 5469596 markings, 10925048 edges, 181124 markings/sec, 25 secs
lola: 6374571 markings, 12755416 edges, 180995 markings/sec, 30 secs
lola: 7273407 markings, 14495601 edges, 179767 markings/sec, 35 secs
lola: 8104579 markings, 16208509 edges, 166234 markings/sec, 40 secs
lola: 8943318 markings, 17922657 edges, 167748 markings/sec, 45 secs
lola: 9844719 markings, 19654467 edges, 180280 markings/sec, 50 secs
lola: 10727238 markings, 21439640 edges, 176504 markings/sec, 55 secs
lola: 11611894 markings, 23192690 edges, 176931 markings/sec, 60 secs
lola: 12435586 markings, 24844293 edges, 164738 markings/sec, 65 secs
lola: 13219231 markings, 26469553 edges, 156729 markings/sec, 70 secs
lola: 14076274 markings, 28155597 edges, 171409 markings/sec, 75 secs
lola: 14983897 markings, 29988447 edges, 181525 markings/sec, 80 secs
lola: 15865902 markings, 31744236 edges, 176401 markings/sec, 85 secs
lola: 16730149 markings, 33450113 edges, 172849 markings/sec, 90 secs
lola: 17522930 markings, 35095494 edges, 158556 markings/sec, 95 secs
lola: 18370776 markings, 36786777 edges, 169569 markings/sec, 100 secs
lola: 19244235 markings, 38558537 edges, 174692 markings/sec, 105 secs
lola: 20106499 markings, 40275199 edges, 172453 markings/sec, 110 secs
lola: 20945618 markings, 41946885 edges, 167824 markings/sec, 115 secs
lola: 21723721 markings, 43559383 edges, 155621 markings/sec, 120 secs
lola: 22596776 markings, 45289475 edges, 174611 markings/sec, 125 secs
lola: 23490710 markings, 47106501 edges, 178787 markings/sec, 130 secs
lola: 24396104 markings, 48908193 edges, 181079 markings/sec, 135 secs
lola: 25220170 markings, 50609901 edges, 164813 markings/sec, 140 secs
lola: 26013559 markings, 52222216 edges, 158678 markings/sec, 145 secs
lola: 26879961 markings, 54043008 edges, 173280 markings/sec, 150 secs
lola: 27734751 markings, 55758713 edges, 170958 markings/sec, 155 secs
lola: 28521109 markings, 57392423 edges, 157272 markings/sec, 160 secs
lola: 29370161 markings, 59084208 edges, 169810 markings/sec, 165 secs
lola: 30219851 markings, 60832367 edges, 169938 markings/sec, 170 secs
lola: 31017915 markings, 62482850 edges, 159613 markings/sec, 175 secs
lola: 31817820 markings, 64145787 edges, 159981 markings/sec, 180 secs
lola: 32626813 markings, 65824410 edges, 161799 markings/sec, 185 secs
lola: 33474656 markings, 67584547 edges, 169569 markings/sec, 190 secs
lola: 34300524 markings, 69299176 edges, 165174 markings/sec, 195 secs
lola: 35108836 markings, 70976973 edges, 161662 markings/sec, 200 secs
lola: 35918844 markings, 72661227 edges, 162002 markings/sec, 205 secs
lola: 36746174 markings, 74377987 edges, 165466 markings/sec, 210 secs
lola: 37539804 markings, 76025335 edges, 158726 markings/sec, 215 secs
lola: local time limit reached - aborting
lola: Child process aborted or communication problem between parent and child process
terminate called after throwing an instance of 'std::runtime_error'
what(): parse error at position 0: unexpected character, last read: '\ufffd'
Aborted (core dumped)
FORMULA Angiogenesis-PT-50-CTLFireability-0 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-50-CTLFireability-1 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-50-CTLFireability-2 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stderr -----
FORMULA Angiogenesis-PT-50-CTLFireability-3 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-50-CTLFireability-4 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-50-CTLFireability-5 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-50-CTLFireability-6 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-50-CTLFireability-7 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-50-CTLFireability-8 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-50-CTLFireability-9 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-50-CTLFireability-10 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-50-CTLFireability-11 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-50-CTLFireability-12 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-50-CTLFireability-13 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-50-CTLFireability-14 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-50-CTLFireability-15 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stdout -----
----- Finished stderr -----
----- Finished stdout -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-50"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="irma4mcc-full"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-50.tgz
mv Angiogenesis-PT-50 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool irma4mcc-full"
echo " Input is Angiogenesis-PT-50, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r018-qhx1-152646242700046"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;