Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
................................................................................
/home/mcc/execution
total 204K
-rw-r--r-- 1 mcc users 4.3K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 23K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:49 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:49 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.2K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.4K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 16K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 109 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 347 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.5K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 15K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:49 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:49 instance
-rw-r--r-- 1 mcc users 6 May 15 18:49 iscolored
-rw-r--r-- 1 mcc users 33K May 15 18:49 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool irma4mcc-full
Input is Angiogenesis-PT-15, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r018-qhx1-152646242700025
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-00
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-01
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-02
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-03
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-04
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-05
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-06
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-07
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-08
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-09
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-10
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-11
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-12
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-13
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-14
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1526762447795


BK_STOP 1526762685163

--------------------
content from stderr:

Prefix is 65b80f64.
Reading known information in /usr/share/mcc4mcc/65b80f64-known.json.
Reading learned information in /usr/share/mcc4mcc/65b80f64-learned.json.
Reading value translations in /usr/share/mcc4mcc/65b80f64-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using Angiogenesis-PT-15 as instance name.
Using Angiogenesis as model name.
Using algorithm or tool voting-classifier.
Model characteristics are: {'Examination': 'CTLFireability', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': True, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': False, 'Source Place': False, 'Sink Place': True, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': True, 'Conservative': False, 'Sub-Conservative': False, 'Nested Units': False, 'Safe': None, 'Deadlock': True, 'Reversible': False, 'Quasi Live': False, 'Live': False}.
/usr/local/lib/python3.6/dist-packages/sklearn/preprocessing/label.py:151: DeprecationWarning: The truth value of an empty array is ambiguous. Returning False, but in future this will result in an error. Use `array.size > 0` to check that an array is not empty.
if diff:
Known tools are: [{'Time': 1408948, 'Memory': 15936.24, 'Tool': 'lola'}, {'Time': 1428399, 'Memory': 15951.29, 'Tool': 'lola'}, {'Time': 2875631, 'Memory': 15947.54, 'Tool': 'itstools'}, {'Time': 2947400, 'Memory': 15948.12, 'Tool': 'itstools'}].
Learned tools are: [{'Tool': 'lola'}].
Learned tool lola is 1.0x far from the best tool lola.
CTLFireability lola Angiogenesis-PT-15...

Time: 3600 - MCC
----- Start make prepare stdout -----
----- Start make prepare stderr -----
===========================================================================================
Angiogenesis-PT-15: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete


checking for too many tokens
===========================================================================================
Angiogenesis-PT-15: translating PT formula CTLFireability into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stderr -----
----- Start make result stdout -----
CTLFireability @ Angiogenesis-PT-15 @ 3538 seconds
Makefile:222: recipe for target 'verify' failed
make: [verify] Error 134 (ignored)
----- Start make result stdout -----
----- Start make result stderr -----
lola: LoLA will run for 3538 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 103/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 39 places, 64 transitions, 31 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 54 transition conflict sets
lola: TASK
lola: reading formula from Angiogenesis-PT-15-CTLFireability.task
lola: (NOT(E (F (A (G (FIREABLE(k38)))))) OR E (X (A (G (NOT FIREABLE(k13)))))) : E (F ((FIREABLE(k15) AND A ((FIREABLE(k18) U FIREABLE(k7)))))) : A (F (A (G (E (F (FIREABLE(k30))))))) : E (((NOT FIREABLE(k27) OR NOT FIREABLE(k38) OR (NOT FIREABLE(k39) AND NOT FIREABLE(k61))) U A ((FIREABLE(k52) U FIREABLE(k14))))) : (A (G (E (F (NOT FIREABLE(t0))))) OR FIREABLE(k40)) : (NOT(A (G (E (F (FIREABLE(k38)))))) OR (((NOT FIREABLE(k17) OR (FIREABLE(k61) AND FIREABLE(k26)) OR FIREABLE(k27)) AND ((FIREABLE(k43) AND FIREABLE(k46) AND FIREABLE(k57)) OR (FIREABLE(k59) AND (FIREABLE(k42) OR FIREABLE(k44))))) OR (((FIREABLE(k41) AND FIREABLE(k46) AND (FIREABLE(k29) OR FIREABLE(k54))) AND E (G (FIREABLE(k44)))) AND (E (X (FIREABLE(k25))) AND A (X (FIREABLE(k58))))))) : NOT(E (F (A (G (FIREABLE(k45)))))) : (((FIREABLE(k16) AND A (F (FIREABLE(k55)))) OR (E (F (FIREABLE(k24))) OR A ((FIREABLE(k50) U FIREABLE(k46))))) AND (E ((NOT FIREABLE(k29) U FIREABLE(k63))) OR NOT((FIREABLE(k60) OR A (X (FIREABLE(k43))))))) : E ((NOT(A (X (FIREABLE(k37)))) U ((FIREABLE(k63) OR (FIREABLE(k8) AND FIREABLE(k5))) AND A (X (FIREABLE(k40)))))) : A (G (E (X ((FIREABLE(k25) OR FIREABLE(k21) OR NOT FIREABLE(k5)))))) : NOT(A (G (FIREABLE(t0)))) : A (X (E (F (A (X (FIREABLE(k19))))))) : E (F ((((FIREABLE(k46) AND FIREABLE(k8) AND FIREABLE(t0)) OR E (F (FIREABLE(k26)))) OR (FIREABLE(k62) AND FIREABLE(k6) AND FIREABLE(t1) AND (FIREABLE(k21) OR FIREABLE(k25) OR FIREABLE(k36)))))) : E (F ((E ((FIREABLE(k61) U FIREABLE(k49))) OR A (X ((FIREABLE(k5) AND FIREABLE(k10))))))) : E (F ((E ((FIREABLE(k46) U FIREABLE(k2))) AND ((FIREABLE(k46) AND FIREABLE(k36) AND NOT FIREABLE(k12)) OR (FIREABLE(k43) AND FIREABLE(k56) AND NOT FIREABLE(k20)))))) : E (F (FIREABLE(k15)))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: (NOT(E (F (A (G (FIREABLE(k38)))))) OR E (X (A (G (NOT FIREABLE(k13))))))
lola: ========================================
lola: SUBTASK
lola: checking a Boolean combination of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (E (F (NOT FIREABLE(k38)))))
lola: ========================================
lola: SUBTASK
lola: checking liveness
lola: liveness not yet implemented, converting to CTL...
lola: processed formula: NOT(E(TRUE U NOT(E(TRUE U NOT FIREABLE(k38)))))
lola: processed formula length: 47
lola: 7 rewrites
lola: formula mentions 0 of 39 places; total mentions: 0
lola: closed formula file Angiogenesis-PT-15-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: 875209 markings, 3362894 edges, 2690661083819016192 markings/sec, 0 secs
lola: 1676865 markings, 6905858 edges, 160331 markings/sec, 5 secs
lola: 2467837 markings, 10400540 edges, 158194 markings/sec, 10 secs
lola: 3273089 markings, 13957864 edges, 161050 markings/sec, 15 secs
lola: 4060961 markings, 17354730 edges, 157574 markings/sec, 20 secs
lola: 4803064 markings, 20492766 edges, 148421 markings/sec, 25 secs
lola: 5541185 markings, 23426267 edges, 147624 markings/sec, 30 secs
lola: 6256499 markings, 26511256 edges, 143063 markings/sec, 35 secs
lola: 6978411 markings, 29308165 edges, 144382 markings/sec, 40 secs
lola: 7687643 markings, 32289567 edges, 141846 markings/sec, 45 secs
lola: 8395180 markings, 35326248 edges, 141507 markings/sec, 50 secs
lola: 9097824 markings, 38240922 edges, 140529 markings/sec, 55 secs
lola: 9802760 markings, 41140489 edges, 140987 markings/sec, 60 secs
lola: 10498909 markings, 44018851 edges, 139230 markings/sec, 65 secs
lola: 11169231 markings, 46805451 edges, 134064 markings/sec, 70 secs
lola: 11851672 markings, 49688077 edges, 136488 markings/sec, 75 secs
lola: 12542365 markings, 52373211 edges, 138139 markings/sec, 80 secs
lola: 13220927 markings, 55257990 edges, 135712 markings/sec, 85 secs
lola: 13896484 markings, 58143520 edges, 135111 markings/sec, 90 secs
lola: 14579009 markings, 60982578 edges, 136505 markings/sec, 95 secs
lola: 15271921 markings, 63780737 edges, 138582 markings/sec, 100 secs
lola: 15939223 markings, 66588975 edges, 133460 markings/sec, 105 secs
lola: 16609739 markings, 69370860 edges, 134103 markings/sec, 110 secs
lola: 17272708 markings, 72119910 edges, 132594 markings/sec, 115 secs
lola: 17940006 markings, 74976003 edges, 133460 markings/sec, 120 secs
lola: 18591508 markings, 77685394 edges, 130300 markings/sec, 125 secs
lola: 19224766 markings, 80337196 edges, 126652 markings/sec, 130 secs
lola: 19896290 markings, 83124833 edges, 134305 markings/sec, 135 secs
lola: 20550352 markings, 85807208 edges, 130812 markings/sec, 140 secs
lola: 21205889 markings, 88560362 edges, 131107 markings/sec, 145 secs
lola: 21864619 markings, 91325993 edges, 131746 markings/sec, 150 secs
lola: 22521510 markings, 94080938 edges, 131378 markings/sec, 155 secs
lola: 23167276 markings, 96816217 edges, 129153 markings/sec, 160 secs
lola: 23791271 markings, 99458831 edges, 124799 markings/sec, 165 secs
lola: 24417240 markings, 102038101 edges, 125194 markings/sec, 170 secs
lola: 25046375 markings, 104640298 edges, 125827 markings/sec, 175 secs
lola: 25647722 markings, 107181040 edges, 120269 markings/sec, 180 secs
lola: 26243230 markings, 109648640 edges, 119102 markings/sec, 185 secs
lola: 26873336 markings, 112272936 edges, 126021 markings/sec, 190 secs
lola: 27512854 markings, 114919595 edges, 127904 markings/sec, 195 secs
lola: 28157157 markings, 117669889 edges, 128861 markings/sec, 200 secs
lola: 28811080 markings, 120391869 edges, 130785 markings/sec, 205 secs
lola: 29448266 markings, 123080164 edges, 127437 markings/sec, 210 secs
lola: 30089875 markings, 125730925 edges, 128322 markings/sec, 215 secs
lola: local time limit reached - aborting
lola: caught signal User defined signal 1 - aborting LoLA
lola: Child process aborted or communication problem between parent and child process
terminate called after throwing an instance of 'std::runtime_error'
what(): parse error at position 0: unexpected character, last read: 'P'
Aborted (core dumped)
FORMULA Angiogenesis-PT-15-CTLFireability-0 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-1 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-2 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-3 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-4 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-5 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-6 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-7 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-8 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-9 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-10 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-11 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-12 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-13 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-14 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-15 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stdout -----
----- Kill lola and sara stderr -----
----- Finished stderr -----
----- Finished stdout -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-15"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="irma4mcc-full"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-15.tgz
mv Angiogenesis-PT-15 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool irma4mcc-full"
echo " Input is Angiogenesis-PT-15, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r018-qhx1-152646242700025"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;