Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.................................................................................................................
/home/mcc/execution
total 276K
-rw-r--r-- 1 mcc users 3.4K May 30 22:43 CTLCardinality.txt
-rw-r--r-- 1 mcc users 19K May 30 22:43 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.4K May 29 16:51 CTLFireability.txt
-rw-r--r-- 1 mcc users 15K May 29 16:51 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 24 11:17 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.2K May 24 11:17 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.6K May 28 11:09 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 28 11:09 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.9K May 28 09:16 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.5K May 28 09:16 LTLFireability.xml
-rw-r--r-- 1 mcc users 1 May 24 11:17 NewModel
-rw-r--r-- 1 mcc users 3.6K May 28 07:30 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 19K May 28 07:30 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 111 May 26 06:33 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 349 May 26 06:33 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.6K May 27 05:06 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 15K May 27 05:06 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 28 07:35 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.7K May 28 07:35 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 24 11:17 equiv_col
-rw-r--r-- 1 mcc users 7 May 24 11:17 instance
-rw-r--r-- 1 mcc users 6 May 24 11:17 iscolored
-rw-r--r-- 1 mcc users 109K May 24 11:17 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is RefineWMG-PT-050050, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r285-csrt-152749176700731
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME RefineWMG-PT-050-050-UpperBounds-00
FORMULA_NAME RefineWMG-PT-050-050-UpperBounds-01
FORMULA_NAME RefineWMG-PT-050-050-UpperBounds-02
FORMULA_NAME RefineWMG-PT-050-050-UpperBounds-03
FORMULA_NAME RefineWMG-PT-050-050-UpperBounds-04
FORMULA_NAME RefineWMG-PT-050-050-UpperBounds-05
FORMULA_NAME RefineWMG-PT-050-050-UpperBounds-06
FORMULA_NAME RefineWMG-PT-050-050-UpperBounds-07
FORMULA_NAME RefineWMG-PT-050-050-UpperBounds-08
FORMULA_NAME RefineWMG-PT-050-050-UpperBounds-09
FORMULA_NAME RefineWMG-PT-050-050-UpperBounds-10
FORMULA_NAME RefineWMG-PT-050-050-UpperBounds-11
FORMULA_NAME RefineWMG-PT-050-050-UpperBounds-12
FORMULA_NAME RefineWMG-PT-050-050-UpperBounds-13
FORMULA_NAME RefineWMG-PT-050-050-UpperBounds-14
FORMULA_NAME RefineWMG-PT-050-050-UpperBounds-15

=== Now, execution of the tool begins

BK_START 1528045816728

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph9075374400530417509.txt, -o, /tmp/graph9075374400530417509.bin, -w, /tmp/graph9075374400530417509.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph9075374400530417509.bin, -l, -1, -v, -w, /tmp/graph9075374400530417509.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/UpperBounds.pnml.gal, -t, CGAL, -reachable-file, UpperBounds.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/UpperBounds.pnml.gal -t CGAL -reachable-file UpperBounds.prop --nowitness
Loading property file UpperBounds.prop.
Read [bounds] property : RefineWMG-PT-050-050-UpperBounds-00 with value :i24.u100.p203
Read [bounds] property : RefineWMG-PT-050-050-UpperBounds-01 with value :i1.u7.p12
Read [bounds] property : RefineWMG-PT-050-050-UpperBounds-02 with value :i14.u64.p128
Read [bounds] property : RefineWMG-PT-050-050-UpperBounds-03 with value :i23.u0.psecond
Read [bounds] property : RefineWMG-PT-050-050-UpperBounds-04 with value :i18.u80.p160
Read [bounds] property : RefineWMG-PT-050-050-UpperBounds-05 with value :i11.u49.p97
Read [bounds] property : RefineWMG-PT-050-050-UpperBounds-06 with value :i28.u108.p223
Read [bounds] property : RefineWMG-PT-050-050-UpperBounds-07 with value :i9.u42.p84
Read [bounds] property : RefineWMG-PT-050-050-UpperBounds-08 with value :i15.u68.p141
Read [bounds] property : RefineWMG-PT-050-050-UpperBounds-09 with value :i16.u72.p142
Read [bounds] property : RefineWMG-PT-050-050-UpperBounds-10 with value :i0.u6.p10
Read [bounds] property : RefineWMG-PT-050-050-UpperBounds-11 with value :i27.u107.p220
Read [bounds] property : RefineWMG-PT-050-050-UpperBounds-12 with value :i22.u96.p193
Read [bounds] property : RefineWMG-PT-050-050-UpperBounds-13 with value :i20.u87.p174
Read [bounds] property : RefineWMG-PT-050-050-UpperBounds-14 with value :i18.u82.p165
Read [bounds] property : RefineWMG-PT-050-050-UpperBounds-15 with value :i15.u68.p136
built 48 ordering constraints for composite.
built 3 ordering constraints for composite.
built 3 ordering constraints for composite.
built 3 ordering constraints for composite.
built 1 ordering constraints for composite.
built 3 ordering constraints for composite.
built 4 ordering constraints for composite.
built 1 ordering constraints for composite.
built 3 ordering constraints for composite.
built 3 ordering constraints for composite.
built 3 ordering constraints for composite.
built 3 ordering constraints for composite.
built 3 ordering constraints for composite.
built 3 ordering constraints for composite.
built 1 ordering constraints for composite.
built 4 ordering constraints for composite.
built 3 ordering constraints for composite.
built 1 ordering constraints for composite.
built 3 ordering constraints for composite.
built 3 ordering constraints for composite.
built 3 ordering constraints for composite.
built 3 ordering constraints for composite.
built 1 ordering constraints for composite.
built 4 ordering constraints for composite.
built 3 ordering constraints for composite.
built 1 ordering constraints for composite.
built 1 ordering constraints for composite.
built 1 ordering constraints for composite.
built 1 ordering constraints for composite.
built 1 ordering constraints for composite.
built 1 ordering constraints for composite.
built 1 ordering constraints for composite.
built 1 ordering constraints for composite.
built 1 ordering constraints for composite.
built 1 ordering constraints for composite.

BK_STOP 1528049157036

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution UpperBounds -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination UpperBounds -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Jun 03, 2018 5:10:19 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, UpperBounds, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
Jun 03, 2018 5:10:19 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Jun 03, 2018 5:10:19 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 76 ms
Jun 03, 2018 5:10:19 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 254 places.
Jun 03, 2018 5:10:19 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 203 transitions.
Jun 03, 2018 5:10:19 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 16 ms
Jun 03, 2018 5:10:19 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
Jun 03, 2018 5:10:19 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 130 ms
Jun 03, 2018 5:10:19 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 29 ms
Begin: Sun Jun 3 17:10:20 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Sun Jun 3 17:10:20 2018
network size: 254 nodes, 850 links, 406 weight
quality increased from -0.00462682 to 0.821737
end computation: Sun Jun 3 17:10:20 2018
level 1:
start computation: Sun Jun 3 17:10:20 2018
network size: 120 nodes, 496 links, 406 weight
quality increased from 0.821737 to 0.924402
end computation: Sun Jun 3 17:10:20 2018
level 2:
start computation: Sun Jun 3 17:10:20 2018
network size: 49 nodes, 165 links, 406 weight
quality increased from 0.924402 to 0.930468
end computation: Sun Jun 3 17:10:20 2018
level 3:
start computation: Sun Jun 3 17:10:20 2018
network size: 34 nodes, 92 links, 406 weight
quality increased from 0.930468 to 0.930468
end computation: Sun Jun 3 17:10:20 2018
End: Sun Jun 3 17:10:20 2018
Total duration: 0 sec
0.930468
Jun 03, 2018 5:10:20 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
Jun 03, 2018 5:10:20 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 62 ms
Jun 03, 2018 5:10:20 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
Jun 03, 2018 5:10:20 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/UpperBounds.pnml.gal : 5 ms
Jun 03, 2018 5:10:20 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/UpperBounds.prop : 1 ms
ITS-tools command line returned an error code 137

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="RefineWMG-PT-050050"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/RefineWMG-PT-050050.tgz
mv RefineWMG-PT-050050 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is RefineWMG-PT-050050, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r285-csrt-152749176700731"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;