Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
........................................................
/home/mcc/execution
total 73M
-rw-r--r-- 1 mcc users 3.2K May 30 22:08 CTLCardinality.txt
-rw-r--r-- 1 mcc users 17K May 30 22:08 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.7K May 29 16:13 CTLFireability.txt
-rw-r--r-- 1 mcc users 20K May 29 16:13 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 24 11:17 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.4K May 24 11:17 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.6K May 28 10:13 LTLCardinality.txt
-rw-r--r-- 1 mcc users 14K May 28 10:13 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K May 28 08:25 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.1K May 28 08:25 LTLFireability.xml
-rw-r--r-- 1 mcc users 1 May 24 11:17 NewModel
-rw-r--r-- 1 mcc users 3.4K May 28 06:58 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 17K May 28 06:58 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 107 May 26 06:31 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 345 May 26 06:31 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.8K May 27 04:30 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 18K May 27 04:30 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.6K May 28 07:33 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.7K May 28 07:32 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 24 11:17 equiv_col
-rw-r--r-- 1 mcc users 2 May 24 11:17 instance
-rw-r--r-- 1 mcc users 6 May 24 11:17 iscolored
-rw-r--r-- 1 mcc users 73M May 24 11:17 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is RERS17pb114-PT-5, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r285-csrt-152749176300503
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME RERS17pb114-PT-1-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1528012778830

Flatten gal took : 17027 ms
Constant places removed 17 places and 0 transitions.
Iterating post reduction 0 with 17 rules applied. Total rules applied 17 place count 1429 transition count 151085
Constant places removed 1 places and 1 transitions.
Iterating post reduction 1 with 1 rules applied. Total rules applied 18 place count 1428 transition count 151084
Applied a total of 18 rules in 5161 ms. Remains 1428 /1446 variables (removed 18) and now considering 151084/151085 (removed 1) transitions.
Normalized transition count is 84690
// Phase 1: matrix 84690 rows 1428 cols
Failed to apply structural reductions, skipping reduction step.
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
built 55 ordering constraints for composite.
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution] killed by timeout after 400 SECONDS
sparsehash FATAL ERROR: failed to allocate 38 groups

BK_STOP 1528014242994

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Jun 03, 2018 7:59:40 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
Jun 03, 2018 7:59:40 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Jun 03, 2018 7:59:43 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 3028 ms
Jun 03, 2018 7:59:43 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 1446 places.
Jun 03, 2018 7:59:47 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 151085 transitions.
Jun 03, 2018 7:59:47 AM fr.lip6.move.gal.pnml.togal.PnmlToGalTransformer transform
INFO: Found NUPN structural information;
Jun 03, 2018 8:00:04 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 17010 ms
Jun 03, 2018 8:00:04 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 659 ms
Jun 03, 2018 8:00:15 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 151085 transitions.
Jun 03, 2018 8:14:25 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
Jun 03, 2018 8:14:36 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 151084 transitions.
Jun 03, 2018 8:14:36 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (151084) to apply POR reductions. Disabling POR matrices.
Jun 03, 2018 8:14:40 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 15071 ms
Jun 03, 2018 8:14:46 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 21691ms conformant to PINS in folder :/home/mcc/execution
Jun 03, 2018 8:14:52 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 11653 ms
Jun 03, 2018 8:14:55 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
Jun 03, 2018 8:15:06 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 11100 ms
Jun 03, 2018 8:15:06 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
Jun 03, 2018 8:16:46 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 294799 redundant transitions.
Jun 03, 2018 8:16:47 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 538 ms
java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution] killed by timeout after 400 SECONDS
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:78)
at java.lang.Thread.run(Thread.java:748)
ITS-tools command line returned an error code 1

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="RERS17pb114-PT-5"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/RERS17pb114-PT-5.tgz
mv RERS17pb114-PT-5 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is RERS17pb114-PT-5, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r285-csrt-152749176300503"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;