Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.........................................................................................................................................
/home/mcc/execution
total 360K
-rw-r--r-- 1 mcc users 4.2K May 30 21:42 CTLCardinality.txt
-rw-r--r-- 1 mcc users 21K May 30 21:42 CTLCardinality.xml
-rw-r--r-- 1 mcc users 6.4K May 29 15:41 CTLFireability.txt
-rw-r--r-- 1 mcc users 21K May 29 15:41 CTLFireability.xml
-rw-r--r-- 1 mcc users 2.8K May 28 09:52 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 28 09:52 LTLCardinality.xml
-rw-r--r-- 1 mcc users 3.3K May 28 08:07 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.9K May 28 08:07 LTLFireability.xml
-rw-r--r-- 1 mcc users 1 May 24 11:17 NewModel
-rw-r--r-- 1 mcc users 4.5K May 28 06:35 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 21K May 28 06:35 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 106 May 26 06:29 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 344 May 26 06:29 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 8.0K May 27 04:04 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 24K May 27 04:04 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 28 07:31 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 28 07:31 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 24 11:17 equiv_col
-rw-r--r-- 1 mcc users 5 May 24 11:17 instance
-rw-r--r-- 1 mcc users 6 May 24 11:17 iscolored
-rw-r--r-- 1 mcc users 166K May 24 11:17 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is MAPKbis-PT-5310, examination is LTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r285-csrt-152749176000294
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-00
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-01
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-02
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-03
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-04
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-05
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-06
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-07
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-08
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-09
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-10
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-11
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-12
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-13
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-14
FORMULA_NAME MAPKbis-PT-5310-LTLFireability-15

=== Now, execution of the tool begins

BK_START 1527991399992

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph303840499969570103.txt, -o, /tmp/graph303840499969570103.bin, -w, /tmp/graph303840499969570103.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph303840499969570103.bin, -l, -1, -v, -w, /tmp/graph303840499969570103.weights, -q, 0, -e, 0.001], workingDir=null]
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock
Read 16 LTL properties
Checking formula 0 : !((F(F((F("((i5.u17.Growth_Arrest_equals_0>=1)&&(i5.u43.p21_equals_1>=1))"))U("((i6.u10.FGFR3_equals_1>=1)&&(i6.u16.GRB2_equals_1>=1))")))))
Formula 0 simplified : !F(F"((i5.u17.Growth_Arrest_equals_0>=1)&&(i5.u43.p21_equals_1>=1))" U "((i6.u10.FGFR3_equals_1>=1)&&(i6.u16.GRB2_equals_1>=1))")
built 44 ordering constraints for composite.
built 18 ordering constraints for composite.
built 62 ordering constraints for composite.
built 24 ordering constraints for composite.
built 22 ordering constraints for composite.
built 30 ordering constraints for composite.
built 12 ordering constraints for composite.
built 29 ordering constraints for composite.
built 23 ordering constraints for composite.
built 26 ordering constraints for composite.
built 11 ordering constraints for composite.
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.
Normalized transition count is 95
// Phase 1: matrix 95 rows 98 cols
invariant :i1:u42:p14_equals_0 + i1:u42:p14_equals_1 = 1
invariant :i3:u18:JNK_equals_0 + i3:u18:JNK_equals_1 = 1
invariant :i5:u46:p70_equals_0 + i5:u46:p70_equals_1 = 1
invariant :i4:u23:MSK_equals_0 + i4:u23:MSK_equals_1 = 1
invariant :i7:u5:BCL2_equals_0 + i7:u5:BCL2_equals_1 = 1
invariant :i2:u38:SPRY_equals_0 + i2:u38:SPRY_equals_1 = 1
invariant :i3:u40:TAOK_equals_0 + i3:u40:TAOK_equals_1 = 1
invariant :i3:u44:DUSP1_equals_0 + i3:u44:DUSP1_equals_1 = 1
invariant :i7:u33:RAF_equals_0 + i7:u33:RAF_equals_1 = 1
invariant :i9:u15:GADD45_equals_0 + i9:u15:GADD45_equals_1 = 1
invariant :i2:u9:ERK_equals_0 + i2:u9:ERK_equals_1 = 1
invariant :i4:u25:MYC_equals_0 + i4:u25:MYC_equals_1 = 1
invariant :i7:u4:Apoptosis_equals_0 + i7:u4:Apoptosis_equals_1 = 1
invariant :i3:u44:p38_equals_0 + i3:u44:p38_equals_1 = 1
invariant :i1:u21:MDM2_equals_0 + i1:u21:MDM2_equals_1 = 1
invariant :i8:u34:RAS_equals_0 + i8:u34:RAS_equals_1 = 1
invariant :i8:u27:PI3K_equals_0 + i8:u27:PI3K_equals_1 = 1
invariant :i6:u16:GRB2_equals_0 + i6:u16:GRB2_equals_1 = 1
invariant :i5:u32:Proliferation_equals_0 + i5:u32:Proliferation_equals_1 = 1
invariant :i6:u10:FGFR3_equals_0 + i6:u10:FGFR3_equals_1 = 1
invariant :i1:u45:p53_equals_0 + i1:u45:p53_equals_1 = 1
invariant :i5:u43:p21_equals_0 + i5:u43:p21_equals_1 = 1
invariant :i7:u0:AKT_0 + i7:u0:AKT_equals_1 = 1
invariant :i6:u29:PLCG_equals_0 + i6:u29:PLCG_equals_1 = 1
invariant :i0:u1:AP1_equals_0 + i0:u1:AP1_equals_1 = 1
invariant :i0:u19:JUN_equals_0 + i0:u19:JUN_equals_1 = 1
invariant :i8:u14:GAB1_equals_0 + i8:u14:GAB1_equals_1 = 1
invariant :i3:u24:MTK1_equals_0 + i3:u24:MTK1_equals_1 = 1
invariant :i3:u39:TAK1_equals_0 + i3:u39:TAK1_equals_1 = 1
invariant :i6:u13:FRS2_equals_0 + i6:u13:FRS2_equals_1 = 1
invariant :i2:u35:RSK_equals_0 + i2:u35:RSK_equals_1 = 1
invariant :i0:u30:PPP2CA_equals_0 + i0:u30:PPP2CA_equals_1 = 1
invariant :i1:u31:PTEN_equals_0 + i1:u31:PTEN_equals_1 = 1
invariant :i6:u7:EGFR_equals_0 + i6:u7:EGFR_equals_1 = 1
invariant :i2:u11:FOS_equals_0 + i2:u11:FOS_equals_1 = 1
invariant :i6:u28:PKC_equals_0 + i6:u28:PKC_equals_1 = 1
invariant :i3:u44:MAP3K1_3_equals_0 + i3:u44:MAP3K1_3_equals_1 = 1
invariant :i9:u36:SMAD_equals_0 + i9:u36:SMAD_equals_1 = 1
invariant :i9:u41:TGFBR_equals_0 + i9:u41:TGFBR_equals_1 = 1
invariant :i5:u17:Growth_Arrest_equals_0 + i5:u17:Growth_Arrest_equals_1 = 1
invariant :i8:u37:SOS_equals_0 + i8:u37:SOS_equals_1 = 1
invariant :i0:u2:ATF2_equals_0 + i0:u2:ATF2_equals_1 = 1
invariant :i7:u12:FOXO3_equals_0 + i7:u12:FOXO3_equals_1 = 1
invariant :i0:u22:MEK1_2_equals_0 + i0:u22:MEK1_2_equals_1 = 1
invariant :i2:u8:ELK1_equals_0 + i2:u8:ELK1_equals_1 = 1
invariant :i4:u6:CREB_equals_0 + i4:u6:CREB_equals_1 = 1
invariant :i8:u26:PDK1_equals_0 + i8:u26:PDK1_equals_1 = 1
invariant :i4:u20:MAX_equals_0 + i4:u20:MAX_equals_1 = 1
invariant :i1:u3:ATM_equals_0 + i1:u3:ATM_equals_1 = 1
Reverse transition relation is NOT exact ! Due to transitions EGFR_equals_1_to_EGFR_equals_0_when_GRB2_equals_1, EGFR_equals_1_to_EGFR_equals_0_when_PKC_equals_1, ERK_equals_0_to_ERK_equals_1_when_MEK1_2_equals_1, GADD45_equals_0_to_GADD45_equals_1_when_p53_equals_1, MAP3K1_3_equals_1_to_MAP3K1_3_equals_0_when_RAS_equals_0, MEK1_2_equals_1_to_MEK1_2_equals_0_when_AP1_equals_1, MEK1_2_equals_1_to_MEK1_2_equals_0_when_PPP2CA_equals_1, MTK1_equals_1_to_MTK1_equals_0_when_GADD45_equals_0, PKC_equals_1_to_PKC_equals_0_when_PLCG_equals_0, PLCG_equals_0_to_PLCG_equals_1_when_EGFR_equals_1, PPP2CA_equals_1_to_PPP2CA_equals_0_when_p38_equals_0, RAS_equals_0_to_RAS_equals_1_when_PLCG_equals_1, RAS_equals_0_to_RAS_equals_1_when_SOS_equals_1, RSK_equals_1_to_RSK_equals_0_when_ERK_equals_0, SOS_equals_1_to_SOS_equals_0_when_GRB2_equals_0, SOS_equals_1_to_SOS_equals_0_when_RSK_equals_1, p38_equals_0_to_p38_equals_1_when_DUSP1_equals_0_and_MTK1_equals_1, p38_equals_0_to_p38_equals_1_when_DUSP1_equals_1_and_MAP3K1_3_equals_1_and_MTK1_equals_1, p53_equals_1_to_p53_equals_0_when_ATM_equals_0_and_MDM2_equals_1, p53_equals_1_to_p53_equals_0_when_ATM_equals_0_and_p38_equals_0, i3.u44.p38_equals_0_to_p38_equals_1_when_DUSP1_equals_0_and_MAP3K1_3_equals_1, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :36/111/21/168
2 unique states visited
2 strongly connected components in search stack
2 transitions explored
2 items max in DFS search stack
207 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,2.11109,43492,1,0,48514,331,2165,118911,192,3215,100097
an accepting run exists (use option '-e' to print it)
Formula 0 is FALSE accepting run found.
FORMULA MAPKbis-PT-5310-LTLFireability-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 1 : !((G("(((((i3.u44.DUSP1_equals_1>=1)&&(i3.u18.JNK_equals_0>=1))&&(i3.u44.MAP3K1_3_equals_0>=1))&&(i3.u24.MTK1_equals_1>=1))&&(i3.u39.TAK1_equals_1>=1))")))
Formula 1 simplified : !G"(((((i3.u44.DUSP1_equals_1>=1)&&(i3.u18.JNK_equals_0>=1))&&(i3.u44.MAP3K1_3_equals_0>=1))&&(i3.u24.MTK1_equals_1>=1))&&(i3.u39.TAK1_equals_1>=1))"
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
12 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,2.2261,45216,1,0,52609,335,2268,126913,192,3358,109480
an accepting run exists (use option '-e' to print it)
Formula 1 is FALSE accepting run found.
FORMULA MAPKbis-PT-5310-LTLFireability-01 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 2 : !(("(((((i3.u44.DUSP1_equals_1>=1)&&(i3.u18.JNK_equals_1>=1))&&(i3.u44.MAP3K1_3_equals_0>=1))&&(i3.u24.MTK1_equals_0>=1))&&(i3.u40.TAOK_equals_0>=1))"))
Formula 2 simplified : !"(((((i3.u44.DUSP1_equals_1>=1)&&(i3.u18.JNK_equals_1>=1))&&(i3.u44.MAP3K1_3_equals_0>=1))&&(i3.u24.MTK1_equals_0>=1))&&(i3.u40.TAOK_equals_0>=1))"
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,2.22699,45480,1,0,52609,335,2290,126913,192,3358,109492
an accepting run exists (use option '-e' to print it)
Formula 2 is FALSE accepting run found.
FORMULA MAPKbis-PT-5310-LTLFireability-02 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 3 : !(("(i1.u3.ATM_equals_1>=1)"))
Formula 3 simplified : !"(i1.u3.ATM_equals_1>=1)"
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,2.22727,45480,1,0,52609,335,2294,126913,193,3358,109507
an accepting run exists (use option '-e' to print it)
Formula 3 is FALSE accepting run found.
FORMULA MAPKbis-PT-5310-LTLFireability-03 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 4 : !((X("((i4.u20.MAX_equals_1>=1)&&(i3.u44.p38_equals_0>=1))")))
Formula 4 simplified : !X"((i4.u20.MAX_equals_1>=1)&&(i3.u44.p38_equals_0>=1))"
4 unique states visited
4 strongly connected components in search stack
4 transitions explored
4 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,2.22824,45732,1,0,52616,335,2299,126930,193,3358,109607
an accepting run exists (use option '-e' to print it)
Formula 4 is FALSE accepting run found.
FORMULA MAPKbis-PT-5310-LTLFireability-04 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 5 : !((G(("((i3.u39.TAK1_equals_0>=1)&&(i9.u41.TGFBR_equals_1>=1))")U(G(G("(((((i3.u44.DUSP1_equals_1>=1)&&(i3.u44.MAP3K1_3_equals_0>=1))&&(i3.u24.MTK1_equals_1>=1))&&(i3.u40.TAOK_equals_1>=1))&&(i3.u44.p38_equals_0>=1))"))))))
Formula 5 simplified : !G("((i3.u39.TAK1_equals_0>=1)&&(i9.u41.TGFBR_equals_1>=1))" U G"(((((i3.u44.DUSP1_equals_1>=1)&&(i3.u44.MAP3K1_3_equals_0>=1))&&(i3.u24.MTK1_equals_1>=1))&&(i3.u40.TAOK_equals_1>=1))&&(i3.u44.p38_equals_0>=1))")
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,2.23984,46264,1,0,52616,335,2358,126930,195,3358,109643
an accepting run exists (use option '-e' to print it)
Formula 5 is FALSE accepting run found.
FORMULA MAPKbis-PT-5310-LTLFireability-05 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 6 : !((X(X(X(X(G("((i7.u0.AKT_equals_1>=1)&&(i7.u33.RAF_equals_1>=1))")))))))
Formula 6 simplified : !XXXXG"((i7.u0.AKT_equals_1>=1)&&(i7.u33.RAF_equals_1>=1))"
7 unique states visited
7 strongly connected components in search stack
7 transitions explored
7 items max in DFS search stack
14 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,2.38566,50292,1,0,60115,335,2378,145174,195,3364,128636
an accepting run exists (use option '-e' to print it)
Formula 6 is FALSE accepting run found.
FORMULA MAPKbis-PT-5310-LTLFireability-06 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 7 : !((F(G((F("((((i7.u0.AKT_0>=1)&&(i2.u9.ERK_equals_0>=1))&&(i7.u33.RAF_equals_0>=1))&&(i8.u34.RAS_equals_1>=1))"))U(F("(((((i3.u44.DUSP1_equals_1>=1)&&(i3.u18.JNK_equals_0>=1))&&(i3.u44.MAP3K1_3_equals_0>=1))&&(i3.u24.MTK1_equals_1>=1))&&(i3.u40.TAOK_equals_1>=1))"))))))
Formula 7 simplified : !FG(F"((((i7.u0.AKT_0>=1)&&(i2.u9.ERK_equals_0>=1))&&(i7.u33.RAF_equals_0>=1))&&(i8.u34.RAS_equals_1>=1))" U F"(((((i3.u44.DUSP1_equals_1>=1)&&(i3.u18.JNK_equals_0>=1))&&(i3.u44.MAP3K1_3_equals_0>=1))&&(i3.u24.MTK1_equals_1>=1))&&(i3.u40.TAOK_equals_1>=1))")
3 unique states visited
3 strongly connected components in search stack
4 transitions explored
3 items max in DFS search stack
1 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,2.39474,50952,1,0,60533,341,2421,146841,195,3515,128748
an accepting run exists (use option '-e' to print it)
Formula 7 is FALSE accepting run found.
FORMULA MAPKbis-PT-5310-LTLFireability-07 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 8 : !((X((X(F("((i5.u43.p21_equals_1>=1)&&(i1.u45.p53_equals_0>=1))")))U(F(X("(((i1.u3.ATM_equals_0>=1)&&(i1.u21.MDM2_equals_1>=1))&&(i1.u45.p53_equals_1>=1))"))))))
Formula 8 simplified : !X(XF"((i5.u43.p21_equals_1>=1)&&(i1.u45.p53_equals_0>=1))" U FX"(((i1.u3.ATM_equals_0>=1)&&(i1.u21.MDM2_equals_1>=1))&&(i1.u45.p53_equals_1>=1))")
4 unique states visited
4 strongly connected components in search stack
4 transitions explored
4 items max in DFS search stack
22 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,2.60898,58072,1,0,78304,346,2485,175344,195,3775,156006
an accepting run exists (use option '-e' to print it)
Formula 8 is FALSE accepting run found.
FORMULA MAPKbis-PT-5310-LTLFireability-08 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 9 : !(("((i6.u10.FGFR3_equals_1>=1)&&(i6.u29.PLCG_equals_0>=1))"))
Formula 9 simplified : !"((i6.u10.FGFR3_equals_1>=1)&&(i6.u29.PLCG_equals_0>=1))"
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,2.60959,58336,1,0,78304,346,2492,175344,195,3775,156012
an accepting run exists (use option '-e' to print it)
Formula 9 is FALSE accepting run found.
FORMULA MAPKbis-PT-5310-LTLFireability-09 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 10 : !((F((("((i2.u9.ERK_equals_0>=1)&&(i2.u35.RSK_equals_1>=1))")U("(((i0.u2.ATF2_equals_1>=1)&&(i3.u18.JNK_equals_0>=1))&&(i3.u44.p38_equals_0>=1))"))U(G(G("(((((i4.u6.CREB_equals_0>=1)&&(i2.u8.ELK1_equals_1>=1))&&(i2.u9.ERK_equals_1>=1))&&(i2.u11.FOS_equals_0>=1))&&(i2.u35.RSK_equals_1>=1))"))))))
Formula 10 simplified : !F(("((i2.u9.ERK_equals_0>=1)&&(i2.u35.RSK_equals_1>=1))" U "(((i0.u2.ATF2_equals_1>=1)&&(i3.u18.JNK_equals_0>=1))&&(i3.u44.p38_equals_0>=1))") U G"(((((i4.u6.CREB_equals_0>=1)&&(i2.u8.ELK1_equals_1>=1))&&(i2.u9.ERK_equals_1>=1))&&(i2.u11.FOS_equals_0>=1))&&(i2.u35.RSK_equals_1>=1))")
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Compilation finished in 5479 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 96 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, <>((((LTLAP14==true))U((LTLAP15==true)))U([]([]((LTLAP16==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 80 ms.
FORMULA MAPKbis-PT-5310-LTLFireability-10 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, (<>(<>([]((LTLAP4==true)))))U([]([](X((LTLAP17==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 47 ms.
FORMULA MAPKbis-PT-5310-LTLFireability-11 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, (X([]((LTLAP18==true))))U([](X(<>((LTLAP19==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 107 ms.
FORMULA MAPKbis-PT-5310-LTLFireability-12 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, [](X((LTLAP20==true))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 60 ms.
FORMULA MAPKbis-PT-5310-LTLFireability-13 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, <>(<>((LTLAP21==true))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 112 ms.
FORMULA MAPKbis-PT-5310-LTLFireability-14 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, (LTLAP22==true), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 60 ms.
FORMULA MAPKbis-PT-5310-LTLFireability-15 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
ITS tools runner thread asked to quit. Dying gracefully.

BK_STOP 1527991476332

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Jun 03, 2018 2:03:24 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
Jun 03, 2018 2:03:24 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Jun 03, 2018 2:03:24 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 85 ms
Jun 03, 2018 2:03:24 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 106 places.
Jun 03, 2018 2:03:24 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 173 transitions.
Jun 03, 2018 2:03:24 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 40 ms
Jun 03, 2018 2:03:24 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
Jun 03, 2018 2:03:24 AM fr.lip6.move.gal.instantiate.DomainAnalyzer computeVariableDomains
INFO: Found a total of 8 fixed domain variables (out of 106 variables) in GAL type MAPKbis_PT_5310
Jun 03, 2018 2:03:24 AM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: Found a total of 8 constant array cells/variables (out of 106 variables) in type MAPKbis_PT_5310
Jun 03, 2018 2:03:24 AM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: EGFR_stimulus_equals_0,FGFR3_stimulus_equals_0,DNA_damage_equals_1,TGFBR_stimulus_equals_0,DNA_damage_equals_0,EGFR_stimulus_equals_1,TGFBR_stimulus_equals_1,FGFR3_stimulus_equals_1,
Jun 03, 2018 2:03:24 AM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Removed 8 constant variables :EGFR_stimulus_equals_0=0, FGFR3_stimulus_equals_0=1, DNA_damage_equals_1=0, TGFBR_stimulus_equals_0=1, DNA_damage_equals_0=1, EGFR_stimulus_equals_1=1, TGFBR_stimulus_equals_1=0, FGFR3_stimulus_equals_1=0
Jun 03, 2018 2:03:24 AM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Simplified 12 expressions due to constant valuations.
Jun 03, 2018 2:03:24 AM fr.lip6.move.gal.instantiate.Simplifier simplifyFalseTransitions
INFO: Removed 5 false transitions.
Jun 03, 2018 2:03:24 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 227 ms
Jun 03, 2018 2:03:25 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 66 ms
Begin: Sun Jun 3 02:03:25 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Sun Jun 3 02:03:25 2018
network size: 98 nodes, 524 links, 336 weight
quality increased from -0.0135461 to 0.40829
end computation: Sun Jun 3 02:03:25 2018
level 1:
start computation: Sun Jun 3 02:03:25 2018
network size: 47 nodes, 231 links, 336 weight
quality increased from 0.40829 to 0.635045
end computation: Sun Jun 3 02:03:25 2018
level 2:
start computation: Sun Jun 3 02:03:25 2018
network size: 14 nodes, 88 links, 336 weight
quality increased from 0.635045 to 0.648589
end computation: Sun Jun 3 02:03:25 2018
level 3:
start computation: Sun Jun 3 02:03:25 2018
network size: 10 nodes, 62 links, 336 weight
quality increased from 0.648589 to 0.648589
end computation: Sun Jun 3 02:03:25 2018
End: Sun Jun 3 02:03:25 2018
Total duration: 0 sec
0.648589
Jun 03, 2018 2:03:25 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
Jun 03, 2018 2:03:25 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 46 ms
Jun 03, 2018 2:03:25 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
Jun 03, 2018 2:03:25 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 238 redundant transitions.
Jun 03, 2018 2:03:25 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 6 ms
Jun 03, 2018 2:03:25 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSLTLTools
INFO: Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 2 ms
Jun 03, 2018 2:03:26 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 168 transitions.
Jun 03, 2018 2:03:26 AM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver computeAndDeclareInvariants
INFO: Computed 49 place invariants in 37 ms
Jun 03, 2018 2:03:27 AM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver init
INFO: Proved 98 variables to be positive in 1404 ms
Jun 03, 2018 2:03:27 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may disable matrix : 168 transitions.
Jun 03, 2018 2:03:27 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of disable matrix completed :0/168 took 1 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Jun 03, 2018 2:03:27 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete disable matrix. took 13 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Jun 03, 2018 2:03:27 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may enable matrix : 168 transitions.
Jun 03, 2018 2:03:27 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete enable matrix. took 10 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Jun 03, 2018 2:03:41 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeCoEnablingMatrix
INFO: Computing symmetric co enabling matrix : 168 transitions.
Jun 03, 2018 2:03:42 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(0/168) took 619 ms. Total solver calls (SAT/UNSAT): 23(12/11)
Jun 03, 2018 2:03:45 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(8/168) took 3843 ms. Total solver calls (SAT/UNSAT): 154(68/86)
Jun 03, 2018 2:03:48 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(18/168) took 6953 ms. Total solver calls (SAT/UNSAT): 342(167/175)
Jun 03, 2018 2:03:52 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(25/168) took 10646 ms. Total solver calls (SAT/UNSAT): 483(234/249)
Jun 03, 2018 2:03:55 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(36/168) took 13783 ms. Total solver calls (SAT/UNSAT): 704(338/366)
Jun 03, 2018 2:03:58 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(49/168) took 17185 ms. Total solver calls (SAT/UNSAT): 854(410/444)
Jun 03, 2018 2:04:02 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(59/168) took 20572 ms. Total solver calls (SAT/UNSAT): 1008(462/546)
Jun 03, 2018 2:04:05 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(64/168) took 23645 ms. Total solver calls (SAT/UNSAT): 1176(502/674)
Jun 03, 2018 2:04:08 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(67/168) took 26817 ms. Total solver calls (SAT/UNSAT): 1267(525/742)
Jun 03, 2018 2:04:11 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(74/168) took 30043 ms. Total solver calls (SAT/UNSAT): 1405(569/836)
Jun 03, 2018 2:04:15 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(85/168) took 33742 ms. Total solver calls (SAT/UNSAT): 1600(658/942)
Jun 03, 2018 2:04:18 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(100/168) took 36746 ms. Total solver calls (SAT/UNSAT): 1764(735/1029)
Jun 03, 2018 2:04:21 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(114/168) took 39875 ms. Total solver calls (SAT/UNSAT): 1873(787/1086)
Jun 03, 2018 2:04:24 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(133/168) took 42919 ms. Total solver calls (SAT/UNSAT): 1969(831/1138)
Jun 03, 2018 2:04:27 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(150/168) took 45932 ms. Total solver calls (SAT/UNSAT): 2151(883/1268)
Jun 03, 2018 2:04:29 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Finished co-enabling matrix. took 47485 ms. Total solver calls (SAT/UNSAT): 2205(900/1305)
Jun 03, 2018 2:04:29 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeDoNotAccord
INFO: Computing Do-Not-Accords matrix : 168 transitions.
Jun 03, 2018 2:04:29 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Completed DNA matrix. took 8 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Jun 03, 2018 2:04:29 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 63280ms conformant to PINS in folder :/home/mcc/execution

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPKbis-PT-5310"
export BK_EXAMINATION="LTLFireability"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/MAPKbis-PT-5310.tgz
mv MAPKbis-PT-5310 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is MAPKbis-PT-5310, examination is LTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r285-csrt-152749176000294"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;