Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
......................
/home/mcc/execution
total 348K
-rw-r--r-- 1 mcc users 4.4K May 30 21:45 CTLCardinality.txt
-rw-r--r-- 1 mcc users 22K May 30 21:45 CTLCardinality.xml
-rw-r--r-- 1 mcc users 6.8K May 29 15:49 CTLFireability.txt
-rw-r--r-- 1 mcc users 23K May 29 15:49 CTLFireability.xml
-rw-r--r-- 1 mcc users 2.8K May 28 09:52 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 28 09:52 LTLCardinality.xml
-rw-r--r-- 1 mcc users 3.4K May 28 08:07 LTLFireability.txt
-rw-r--r-- 1 mcc users 11K May 28 08:07 LTLFireability.xml
-rw-r--r-- 1 mcc users 1 May 24 11:17 NewModel
-rw-r--r-- 1 mcc users 4.3K May 28 06:38 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 28 06:38 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 106 May 26 06:29 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 344 May 26 06:29 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 4.7K May 27 04:07 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 14K May 27 04:07 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 28 07:31 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 28 07:31 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 24 11:17 equiv_col
-rw-r--r-- 1 mcc users 5 May 24 11:17 instance
-rw-r--r-- 1 mcc users 6 May 24 11:17 iscolored
-rw-r--r-- 1 mcc users 166K May 24 11:17 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstools
Input is MAPKbis-PT-5320, examination is LTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r284-csrt-152749174900303
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPKbis-PT-5320-LTLFireability-00
FORMULA_NAME MAPKbis-PT-5320-LTLFireability-01
FORMULA_NAME MAPKbis-PT-5320-LTLFireability-02
FORMULA_NAME MAPKbis-PT-5320-LTLFireability-03
FORMULA_NAME MAPKbis-PT-5320-LTLFireability-04
FORMULA_NAME MAPKbis-PT-5320-LTLFireability-05
FORMULA_NAME MAPKbis-PT-5320-LTLFireability-06
FORMULA_NAME MAPKbis-PT-5320-LTLFireability-07
FORMULA_NAME MAPKbis-PT-5320-LTLFireability-08
FORMULA_NAME MAPKbis-PT-5320-LTLFireability-09
FORMULA_NAME MAPKbis-PT-5320-LTLFireability-10
FORMULA_NAME MAPKbis-PT-5320-LTLFireability-11
FORMULA_NAME MAPKbis-PT-5320-LTLFireability-12
FORMULA_NAME MAPKbis-PT-5320-LTLFireability-13
FORMULA_NAME MAPKbis-PT-5320-LTLFireability-14
FORMULA_NAME MAPKbis-PT-5320-LTLFireability-15

=== Now, execution of the tool begins

BK_START 1527926836779

Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock
Read 16 LTL properties
Checking formula 0 : !((F((X(X("(((DUSP1_equals_0>=1)&&(JNK_equals_0>=1))&&(TAK1_equals_1>=1))")))U(G(X("((ERK_equals_1>=1)&&(RAF_equals_1>=1))"))))))
Formula 0 simplified : !F(XX"(((DUSP1_equals_0>=1)&&(JNK_equals_0>=1))&&(TAK1_equals_1>=1))" U GX"((ERK_equals_1>=1)&&(RAF_equals_1>=1))")
Reverse transition relation is NOT exact ! Due to transitions AP1_equals_1_to_AP1_equals_0_when_ATF2_equals_0_and_FOS_equals_0, AP1_equals_1_to_AP1_equals_0_when_JUN_equals_0, ATF2_equals_1_to_ATF2_equals_0_when_JNK_equals_0_and_p38_equals_0, ATM_equals_0_to_ATM_equals_1_when_DNA_damage_equals_1, Apoptosis_equals_1_to_Apoptosis_equals_0_when_FOXO3_equals_0, Apoptosis_equals_1_to_Apoptosis_equals_0_when_p53_equals_0, CREB_equals_1_to_CREB_equals_0_when_MSK_equals_0, DUSP1_equals_1_to_DUSP1_equals_0_when_CREB_equals_0, ELK1_equals_1_to_ELK1_equals_0_when_ERK_equals_0_and_JNK_equals_0_and_p38_equals_0, FOXO3_equals_1_to_FOXO3_equals_0_when_JNK_equals_0, GADD45_equals_1_to_GADD45_equals_0_when_SMAD_equals_0_and_p53_equals_0, Growth_Arrest_equals_1_to_Growth_Arrest_equals_0_when_p21_equals_0, JNK_equals_1_to_JNK_equals_0_when_DUSP1_equals_0_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAK1_equals_0_and_TAOK_equals_0, JUN_equals_1_to_JUN_equals_0_when_JNK_equals_0, MAX_equals_1_to_MAX_equals_0_when_p38_equals_0, MDM2_equals_1_to_MDM2_equals_0_when_AKT_equals_0_and_p53_equals_0, MSK_equals_1_to_MSK_equals_0_when_ERK_equals_0_and_p38_equals_0, MTK1_equals_0_to_MTK1_equals_1_when_GADD45_equals_1, MTK1_equals_1_to_MTK1_equals_0_when_GADD45_equals_0, MYC_equals_1_to_MYC_equals_0_when_AKT_equals_0_and_MAX_equals_0, MYC_equals_1_to_MYC_equals_0_when_MSK_equals_0, PPP2CA_equals_1_to_PPP2CA_equals_0_when_p38_equals_0, PTEN_equals_1_to_PTEN_equals_0_when_p53_equals_0, TAOK_equals_0_to_TAOK_equals_1_when_ATM_equals_1, p14_equals_1_to_p14_equals_0_when_MYC_equals_0, p21_equals_1_to_p21_equals_0_when_p53_equals_0, p38_equals_1_to_p38_equals_0_when_DUSP1_equals_0_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAK1_equals_0_and_TAOK_equals_0, p38_equals_1_to_p38_equals_0_when_DUSP1_equals_1_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAK1_equals_0, p38_equals_1_to_p38_equals_0_when_DUSP1_equals_1_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAOK_equals_0, p53_equals_0_to_p53_equals_1_when_ATM_equals_1_and_MDM2_equals_0, p53_equals_0_to_p53_equals_1_when_ATM_equals_1_and_p38_equals_1, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :106/32/31/169
Computing Next relation with stutter on 1 deadlock states
3 unique states visited
2 strongly connected components in search stack
4 transitions explored
3 items max in DFS search stack
26 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.344359,23644,1,0,164,28977,258,71,3388,28627,255
an accepting run exists (use option '-e' to print it)
Formula 0 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLFireability-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 1 : !((F(X(F(F(X("(TGFBR_equals_1>=1)")))))))
Formula 1 simplified : !FXFX"(TGFBR_equals_1>=1)"
Computing Next relation with stutter on 1 deadlock states
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.
Normalized transition count is 95
// Phase 1: matrix 95 rows 98 cols
invariant :EGFR_equals_0 + EGFR_equals_1 = 1
invariant :GAB1_equals_0 + GAB1_equals_1 = 1
invariant :MYC_equals_0 + MYC_equals_1 = 1
invariant :MEK1_2_equals_0 + MEK1_2_equals_1 = 1
invariant :RSK_equals_0 + RSK_equals_1 = 1
invariant :FRS2_equals_0 + FRS2_equals_1 = 1
invariant :Growth_Arrest_equals_0 + Growth_Arrest_equals_1 = 1
invariant :JNK_equals_0 + JNK_equals_1 = 1
invariant :SPRY_equals_0 + SPRY_equals_1 = 1
invariant :p38_equals_0 + p38_equals_1 = 1
invariant :FGFR3_equals_0 + FGFR3_equals_1 = 1
invariant :MSK_equals_0 + MSK_equals_1 = 1
invariant :RAS_equals_0 + RAS_equals_1 = 1
invariant :MAP3K1_3_equals_0 + MAP3K1_3_equals_1 = 1
invariant :CREB_equals_0 + CREB_equals_1 = 1
invariant :p14_equals_0 + p14_equals_1 = 1
invariant :TGFBR_equals_0 + TGFBR_equals_1 = 1
invariant :PTEN_equals_0 + PTEN_equals_1 = 1
invariant :MTK1_equals_0 + MTK1_equals_1 = 1
invariant :PLCG_equals_0 + PLCG_equals_1 = 1
invariant :ELK1_equals_0 + ELK1_equals_1 = 1
invariant :PI3K_equals_0 + PI3K_equals_1 = 1
invariant :SMAD_equals_0 + SMAD_equals_1 = 1
invariant :RAF_equals_0 + RAF_equals_1 = 1
invariant :AKT_0 + AKT_equals_1 = 1
invariant :ATF2_equals_0 + ATF2_equals_1 = 1
invariant :TAK1_equals_0 + TAK1_equals_1 = 1
invariant :GADD45_equals_0 + GADD45_equals_1 = 1
invariant :GRB2_equals_0 + GRB2_equals_1 = 1
invariant :PPP2CA_equals_0 + PPP2CA_equals_1 = 1
invariant :FOXO3_equals_0 + FOXO3_equals_1 = 1
invariant :Apoptosis_equals_0 + Apoptosis_equals_1 = 1
invariant :DUSP1_equals_0 + DUSP1_equals_1 = 1
invariant :PKC_equals_0 + PKC_equals_1 = 1
invariant :FOS_equals_0 + FOS_equals_1 = 1
invariant :Proliferation_equals_0 + Proliferation_equals_1 = 1
invariant :JUN_equals_0 + JUN_equals_1 = 1
invariant :p53_equals_0 + p53_equals_1 = 1
invariant :p70_equals_0 + p70_equals_1 = 1
invariant :PDK1_equals_0 + PDK1_equals_1 = 1
invariant :p21_equals_0 + p21_equals_1 = 1
invariant :AP1_equals_0 + AP1_equals_1 = 1
invariant :SOS_equals_0 + SOS_equals_1 = 1
invariant :ATM_equals_0 + ATM_equals_1 = 1
invariant :ERK_equals_0 + ERK_equals_1 = 1
invariant :MAX_equals_0 + MAX_equals_1 = 1
invariant :TAOK_equals_0 + TAOK_equals_1 = 1
invariant :MDM2_equals_0 + MDM2_equals_1 = 1
invariant :BCL2_equals_0 + BCL2_equals_1 = 1
4 unique states visited
4 strongly connected components in search stack
4 transitions explored
4 items max in DFS search stack
344 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,3.78477,139200,1,0,215,535439,267,195,3390,820437,508
an accepting run exists (use option '-e' to print it)
Formula 1 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLFireability-01 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 2 : !((F(G(X(F(F("(((DUSP1_equals_0>=1)&&(MTK1_equals_1>=1))&&(p38_equals_0>=1))")))))))
Formula 2 simplified : !FGXF"(((DUSP1_equals_0>=1)&&(MTK1_equals_1>=1))&&(p38_equals_0>=1))"
Computing Next relation with stutter on 1 deadlock states
4 unique states visited
4 strongly connected components in search stack
5 transitions explored
4 items max in DFS search stack
366 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,7.44829,214928,1,0,384,890680,276,365,3395,1.27794e+06,939
an accepting run exists (use option '-e' to print it)
Formula 2 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLFireability-02 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 3 : !((("((SMAD_equals_0>=1)&&(TGFBR_equals_1>=1))")U("((MYC_equals_1>=1)&&(p14_equals_0>=1))")))
Formula 3 simplified : !("((SMAD_equals_0>=1)&&(TGFBR_equals_1>=1))" U "((MYC_equals_1>=1)&&(p14_equals_0>=1))")
Computing Next relation with stutter on 1 deadlock states
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,7.45033,215428,1,0,384,890727,288,365,3404,1.278e+06,947
an accepting run exists (use option '-e' to print it)
Formula 3 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLFireability-03 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 4 : !((X((("((JNK_equals_1>=1)&&(JUN_equals_0>=1))")U("(FGFR3_equals_1>=1)"))U(("((ERK_equals_1>=1)&&(MEK1_2_equals_0>=1))")U("(((DUSP1_equals_0>=1)&&(MTK1_equals_1>=1))&&(p38_equals_0>=1))")))))
Formula 4 simplified : !X(("((JNK_equals_1>=1)&&(JUN_equals_0>=1))" U "(FGFR3_equals_1>=1)") U ("((ERK_equals_1>=1)&&(MEK1_2_equals_0>=1))" U "(((DUSP1_equals_0>=1)&&(MTK1_equals_1>=1))&&(p38_equals_0>=1))"))
Computing Next relation with stutter on 1 deadlock states
4 unique states visited
4 strongly connected components in search stack
4 transitions explored
4 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,7.45624,216440,1,0,384,890870,321,365,3441,1.27816e+06,958
an accepting run exists (use option '-e' to print it)
Formula 4 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLFireability-04 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 5 : !((F("((((ATM_equals_1>=1)&&(MDM2_equals_1>=1))&&(p38_equals_0>=1))&&(p53_equals_1>=1))")))
Formula 5 simplified : !F"((((ATM_equals_1>=1)&&(MDM2_equals_1>=1))&&(p38_equals_0>=1))&&(p53_equals_1>=1))"
Computing Next relation with stutter on 1 deadlock states
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
2 unique states visited
2 strongly connected components in search stack
2 transitions explored
2 items max in DFS search stack
86 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,8.32366,238352,1,0,515,994173,330,477,3447,1.41769e+06,1203
an accepting run exists (use option '-e' to print it)
Formula 5 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLFireability-05 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 6 : !(((F(G(G("(((PI3K_equals_0>=1)&&(RAS_equals_1>=1))&&(SOS_equals_1>=1))"))))U(F(("(((PLCG_equals_0>=1)&&(RAS_equals_1>=1))&&(SOS_equals_0>=1))")U("(((GRB2_equals_1>=1)&&(RSK_equals_0>=1))&&(SOS_equals_0>=1))")))))
Formula 6 simplified : !(FG"(((PI3K_equals_0>=1)&&(RAS_equals_1>=1))&&(SOS_equals_1>=1))" U F("(((PLCG_equals_0>=1)&&(RAS_equals_1>=1))&&(SOS_equals_0>=1))" U "(((GRB2_equals_1>=1)&&(RSK_equals_0>=1))&&(SOS_equals_0>=1))"))
Computing Next relation with stutter on 1 deadlock states
2 unique states visited
2 strongly connected components in search stack
2 transitions explored
2 items max in DFS search stack
8 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,8.40711,241208,1,0,562,995011,339,572,3453,1.42062e+06,1454
an accepting run exists (use option '-e' to print it)
Formula 6 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLFireability-06 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 7 : !((X(G(X(("((AP1_equals_1>=1)&&(MEK1_2_equals_1>=1))")U("((GAB1_equals_1>=1)&&(PI3K_equals_0>=1))"))))))
Formula 7 simplified : !XGX("((AP1_equals_1>=1)&&(MEK1_2_equals_1>=1))" U "((GAB1_equals_1>=1)&&(PI3K_equals_0>=1))")
Computing Next relation with stutter on 1 deadlock states
5 unique states visited
5 strongly connected components in search stack
6 transitions explored
5 items max in DFS search stack
1 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,8.40923,241428,1,0,562,995011,349,572,3466,1.42062e+06,1458
an accepting run exists (use option '-e' to print it)
Formula 7 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLFireability-07 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 8 : !((X((X("((GADD45_equals_1>=1)&&(MTK1_equals_0>=1))"))U((false)U("((((MYC_equals_1>=1)&&(Proliferation_equals_0>=1))&&(p21_equals_0>=1))&&(p70_equals_1>=1))")))))
Formula 8 simplified : !X(X"((GADD45_equals_1>=1)&&(MTK1_equals_0>=1))" U "((((MYC_equals_1>=1)&&(Proliferation_equals_0>=1))&&(p21_equals_0>=1))&&(p70_equals_1>=1))")
Computing Next relation with stutter on 1 deadlock states
5 unique states visited
5 strongly connected components in search stack
5 transitions explored
5 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,8.41286,241692,1,0,562,995133,358,572,3478,1.42078e+06,1466
an accepting run exists (use option '-e' to print it)
Formula 8 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLFireability-08 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 9 : !((X(G(G(G(X("((GADD45_equals_0>=1)&&(p53_equals_1>=1))")))))))
Formula 9 simplified : !XGX"((GADD45_equals_0>=1)&&(p53_equals_1>=1))"
Computing Next relation with stutter on 1 deadlock states
5 unique states visited
5 strongly connected components in search stack
5 transitions explored
5 items max in DFS search stack
12 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,8.52418,243268,1,0,683,1.00662e+06,364,654,3480,1.44267e+06,1677
an accepting run exists (use option '-e' to print it)
Formula 9 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLFireability-09 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 10 : !((X(F(X(X(F("((EGFR_equals_1>=1)&&(GRB2_equals_1>=1))")))))))
Formula 10 simplified : !XFXXF"((EGFR_equals_1>=1)&&(GRB2_equals_1>=1))"
Computing Next relation with stutter on 1 deadlock states
5 unique states visited
5 strongly connected components in search stack
5 transitions explored
5 items max in DFS search stack
6 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,8.5956,245908,1,0,686,1.00728e+06,373,660,3483,1.44439e+06,1787
an accepting run exists (use option '-e' to print it)
Formula 10 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLFireability-10 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 11 : !(("((TAK1_equals_1>=1)&&(TGFBR_equals_0>=1))"))
Formula 11 simplified : !"((TAK1_equals_1>=1)&&(TGFBR_equals_0>=1))"
Computing Next relation with stutter on 1 deadlock states
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
1 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,8.59644,245908,1,0,686,1.00728e+06,376,660,3487,1.44439e+06,1789
an accepting run exists (use option '-e' to print it)
Formula 11 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLFireability-11 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 12 : !((F(G(F("((FRS2_equals_1>=1)&&(SPRY_equals_1>=1))")))))
Formula 12 simplified : !FGF"((FRS2_equals_1>=1)&&(SPRY_equals_1>=1))"
Computing Next relation with stutter on 1 deadlock states
4 unique states visited
4 strongly connected components in search stack
5 transitions explored
4 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,8.59763,246172,1,0,686,1.00728e+06,385,660,3492,1.44439e+06,1797
an accepting run exists (use option '-e' to print it)
Formula 12 is FALSE accepting run found.
FORMULA MAPKbis-PT-5320-LTLFireability-12 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 13 : !((F(G("((FOXO3_equals_1>=1)&&(JNK_equals_0>=1))"))))
Formula 13 simplified : !FG"((FOXO3_equals_1>=1)&&(JNK_equals_0>=1))"
Computing Next relation with stutter on 1 deadlock states
Compilation finished in 2346 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 53 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, <>([]((LTLAP21==true))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 55 ms.
FORMULA MAPKbis-PT-5320-LTLFireability-13 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, ([](<>((LTLAP22==true))))U([](((LTLAP23==true))U((LTLAP7==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 62 ms.
FORMULA MAPKbis-PT-5320-LTLFireability-14 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, (LTLAP18==true), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 52 ms.
FORMULA MAPKbis-PT-5320-LTLFireability-15 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
ITS tools runner thread asked to quit. Dying gracefully.

BK_STOP 1527926850106

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Jun 02, 2018 8:07:18 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
Jun 02, 2018 8:07:18 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Jun 02, 2018 8:07:18 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 86 ms
Jun 02, 2018 8:07:18 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 106 places.
Jun 02, 2018 8:07:19 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 173 transitions.
Jun 02, 2018 8:07:19 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 33 ms
Jun 02, 2018 8:07:19 AM fr.lip6.move.gal.instantiate.DomainAnalyzer computeVariableDomains
INFO: Found a total of 8 fixed domain variables (out of 106 variables) in GAL type MAPKbis_PT_5320
Jun 02, 2018 8:07:19 AM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: Found a total of 8 constant array cells/variables (out of 106 variables) in type MAPKbis_PT_5320
Jun 02, 2018 8:07:19 AM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: DNA_damage_equals_0,DNA_damage_equals_1,EGFR_stimulus_equals_0,FGFR3_stimulus_equals_1,TGFBR_stimulus_equals_1,FGFR3_stimulus_equals_0,TGFBR_stimulus_equals_0,EGFR_stimulus_equals_1,
Jun 02, 2018 8:07:19 AM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Removed 8 constant variables :DNA_damage_equals_0=0, DNA_damage_equals_1=1, EGFR_stimulus_equals_0=1, FGFR3_stimulus_equals_1=0, TGFBR_stimulus_equals_1=0, FGFR3_stimulus_equals_0=1, TGFBR_stimulus_equals_0=1, EGFR_stimulus_equals_1=0
Jun 02, 2018 8:07:19 AM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Simplified 13 expressions due to constant valuations.
Jun 02, 2018 8:07:19 AM fr.lip6.move.gal.instantiate.Simplifier simplifyFalseTransitions
INFO: Removed 4 false transitions.
Jun 02, 2018 8:07:19 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 122 ms
Jun 02, 2018 8:07:19 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 7 ms
Jun 02, 2018 8:07:19 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSLTLTools
INFO: Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 14 ms
Jun 02, 2018 8:07:19 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 169 transitions.
Jun 02, 2018 8:07:20 AM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver computeAndDeclareInvariants
INFO: Computed 49 place invariants in 30 ms
Jun 02, 2018 8:07:21 AM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver init
INFO: Proved 98 variables to be positive in 1164 ms
Jun 02, 2018 8:07:21 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may disable matrix : 169 transitions.
Jun 02, 2018 8:07:21 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of disable matrix completed :0/169 took 1 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Jun 02, 2018 8:07:21 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete disable matrix. took 74 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Jun 02, 2018 8:07:21 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may enable matrix : 169 transitions.
Jun 02, 2018 8:07:21 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete enable matrix. took 21 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Jun 02, 2018 8:07:24 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeCoEnablingMatrix
INFO: Computing symmetric co enabling matrix : 169 transitions.
Jun 02, 2018 8:07:24 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(0/169) took 67 ms. Total solver calls (SAT/UNSAT): 23(12/11)
Jun 02, 2018 8:07:27 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Finished co-enabling matrix. took 2762 ms. Total solver calls (SAT/UNSAT): 2219(907/1312)
Jun 02, 2018 8:07:27 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeDoNotAccord
INFO: Computing Do-Not-Accords matrix : 169 transitions.
Jun 02, 2018 8:07:27 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Completed DNA matrix. took 6 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Jun 02, 2018 8:07:27 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 7688ms conformant to PINS in folder :/home/mcc/execution

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPKbis-PT-5320"
export BK_EXAMINATION="LTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/MAPKbis-PT-5320.tgz
mv MAPKbis-PT-5320 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstools"
echo " Input is MAPKbis-PT-5320, examination is LTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r284-csrt-152749174900303"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;