Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..................................................................
/home/mcc/execution
total 348K
-rw-r--r-- 1 mcc users 4.4K May 30 21:45 CTLCardinality.txt
-rw-r--r-- 1 mcc users 22K May 30 21:45 CTLCardinality.xml
-rw-r--r-- 1 mcc users 6.8K May 29 15:49 CTLFireability.txt
-rw-r--r-- 1 mcc users 23K May 29 15:49 CTLFireability.xml
-rw-r--r-- 1 mcc users 2.8K May 28 09:52 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 28 09:52 LTLCardinality.xml
-rw-r--r-- 1 mcc users 3.4K May 28 08:07 LTLFireability.txt
-rw-r--r-- 1 mcc users 11K May 28 08:07 LTLFireability.xml
-rw-r--r-- 1 mcc users 1 May 24 11:17 NewModel
-rw-r--r-- 1 mcc users 4.3K May 28 06:38 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 28 06:38 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 106 May 26 06:29 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 344 May 26 06:29 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 4.7K May 27 04:07 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 14K May 27 04:07 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 28 07:31 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 28 07:31 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 24 11:17 equiv_col
-rw-r--r-- 1 mcc users 5 May 24 11:17 instance
-rw-r--r-- 1 mcc users 6 May 24 11:17 iscolored
-rw-r--r-- 1 mcc users 166K May 24 11:17 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstools
Input is MAPKbis-PT-5320, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r284-csrt-152749174900301
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-00
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-01
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-02
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-03
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-04
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-05
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-06
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-07
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-08
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-09
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-10
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-11
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-12
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-13
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-14
FORMULA_NAME MAPKbis-PT-5320-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1527926828194

Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,8.12646e+06,0.140578,7616,2,247,5,15136,6,0,555,11428,0


Converting to forward existential form...Done !
original formula: !(EF((AX((((DUSP1_equals_0>=1)&&(JNK_equals_0>=1))&&(TAK1_equals_1>=1))) * ((GADD45_equals_0>=1)&&(p53_equals_1>=1)))))
=> equivalent forward existential formula: [((FwdU(Init,TRUE) * ((GADD45_equals_0>=1)&&(p53_equals_1>=1))) * !(EX(!((((DUSP1_equals_0>=1)&&(JNK_equals_0>=1))&&(TAK1_equals_1>=1))))))] = FALSE
Reverse transition relation is NOT exact ! Due to transitions AP1_equals_1_to_AP1_equals_0_when_ATF2_equals_0_and_FOS_equals_0, AP1_equals_1_to_AP1_equals_0_when_JUN_equals_0, ATF2_equals_1_to_ATF2_equals_0_when_JNK_equals_0_and_p38_equals_0, ATM_equals_0_to_ATM_equals_1_when_DNA_damage_equals_1, Apoptosis_equals_1_to_Apoptosis_equals_0_when_FOXO3_equals_0, Apoptosis_equals_1_to_Apoptosis_equals_0_when_p53_equals_0, CREB_equals_1_to_CREB_equals_0_when_MSK_equals_0, DUSP1_equals_1_to_DUSP1_equals_0_when_CREB_equals_0, ELK1_equals_1_to_ELK1_equals_0_when_ERK_equals_0_and_JNK_equals_0_and_p38_equals_0, FOXO3_equals_1_to_FOXO3_equals_0_when_JNK_equals_0, GADD45_equals_1_to_GADD45_equals_0_when_SMAD_equals_0_and_p53_equals_0, Growth_Arrest_equals_1_to_Growth_Arrest_equals_0_when_p21_equals_0, JNK_equals_1_to_JNK_equals_0_when_DUSP1_equals_0_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAK1_equals_0_and_TAOK_equals_0, JUN_equals_1_to_JUN_equals_0_when_JNK_equals_0, MAX_equals_1_to_MAX_equals_0_when_p38_equals_0, MDM2_equals_1_to_MDM2_equals_0_when_AKT_equals_0_and_p53_equals_0, MSK_equals_1_to_MSK_equals_0_when_ERK_equals_0_and_p38_equals_0, MTK1_equals_0_to_MTK1_equals_1_when_GADD45_equals_1, MTK1_equals_1_to_MTK1_equals_0_when_GADD45_equals_0, MYC_equals_1_to_MYC_equals_0_when_AKT_equals_0_and_MAX_equals_0, MYC_equals_1_to_MYC_equals_0_when_MSK_equals_0, PPP2CA_equals_1_to_PPP2CA_equals_0_when_p38_equals_0, PTEN_equals_1_to_PTEN_equals_0_when_p53_equals_0, TAOK_equals_0_to_TAOK_equals_1_when_ATM_equals_1, p14_equals_1_to_p14_equals_0_when_MYC_equals_0, p21_equals_1_to_p21_equals_0_when_p53_equals_0, p38_equals_1_to_p38_equals_0_when_DUSP1_equals_0_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAK1_equals_0_and_TAOK_equals_0, p38_equals_1_to_p38_equals_0_when_DUSP1_equals_1_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAK1_equals_0, p38_equals_1_to_p38_equals_0_when_DUSP1_equals_1_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAOK_equals_0, p53_equals_0_to_p53_equals_1_when_ATM_equals_1_and_MDM2_equals_0, p53_equals_0_to_p53_equals_1_when_ATM_equals_1_and_p38_equals_1, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :106/32/31/169
(forward)formula 0,1,0.209009,8908,1,0,163,15547,250,69,3176,16079,240
FORMULA MAPKbis-PT-5320-CTLFireability-00 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EF(!(((((CREB_equals_0>=1)&&(ELK1_equals_0>=1))&&(FOS_equals_1>=1))||((!((SMAD_equals_0>=1)&&(TGFBR_equals_1>=1)))||(((((((DUSP1_equals_1>=1)&&(MAP3K1_3_equals_1>=1))&&(MTK1_equals_0>=1))&&(TAK1_equals_0>=1))&&(TAOK_equals_0>=1))&&(p38_equals_1>=1))&&((((ATM_equals_1>=1)&&(MDM2_equals_1>=1))&&(p38_equals_0>=1))&&(p53_equals_1>=1)))))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(((((CREB_equals_0>=1)&&(ELK1_equals_0>=1))&&(FOS_equals_1>=1))||((!((SMAD_equals_0>=1)&&(TGFBR_equals_1>=1)))||(((((((DUSP1_equals_1>=1)&&(MAP3K1_3_equals_1>=1))&&(MTK1_equals_0>=1))&&(TAK1_equals_0>=1))&&(TAOK_equals_0>=1))&&(p38_equals_1>=1))&&((((ATM_equals_1>=1)&&(MDM2_equals_1>=1))&&(p38_equals_0>=1))&&(p53_equals_1>=1)))))))] != FALSE
(forward)formula 1,0,0.211604,9172,1,0,163,15598,252,69,3202,16083,240
FORMULA MAPKbis-PT-5320-CTLFireability-01 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (!(((((DUSP1_equals_0>=1)&&(MTK1_equals_1>=1))&&(p38_equals_0>=1)) + EF((((AKT_equals_1>=1)&&(PTEN_equals_1>=1))&&(((DUSP1_equals_0>=1)&&(JNK_equals_0>=1))&&(MTK1_equals_1>=1)))))) + (((Apoptosis_equals_1>=1)&&(p53_equals_0>=1)) + AF(((((RAS_equals_0>=1)&&(SOS_equals_1>=1))&&((ERK_equals_0>=1)&&(SPRY_equals_1>=1)))&&(!((CREB_equals_1>=1)&&(MSK_equals_0>=1)))))))
=> equivalent forward existential formula: [FwdG(((Init * !(!(((((DUSP1_equals_0>=1)&&(MTK1_equals_1>=1))&&(p38_equals_0>=1)) + E(TRUE U (((AKT_equals_1>=1)&&(PTEN_equals_1>=1))&&(((DUSP1_equals_0>=1)&&(JNK_equals_0>=1))&&(MTK1_equals_1>=1)))))))) * !(((Apoptosis_equals_1>=1)&&(p53_equals_0>=1)))),!(((((RAS_equals_0>=1)&&(SOS_equals_1>=1))&&((ERK_equals_0>=1)&&(SPRY_equals_1>=1)))&&(!((CREB_equals_1>=1)&&(MSK_equals_0>=1))))))] = FALSE
(forward)formula 2,1,0.224101,9172,1,0,166,16275,264,72,3296,18366,247
FORMULA MAPKbis-PT-5320-CTLFireability-02 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EF(((TAK1_equals_0>=1)&&(TGFBR_equals_1>=1)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * ((TAK1_equals_0>=1)&&(TGFBR_equals_1>=1)))] != FALSE
(forward)formula 3,0,0.224431,9436,1,0,166,16275,265,72,3296,18366,247
FORMULA MAPKbis-PT-5320-CTLFireability-03 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (A((((((((Apoptosis_equals_0>=1)&&(BCL2_equals_0>=1))&&(ERK_equals_0>=1))&&(FOXO3_equals_1>=1))&&(p53_equals_1>=1))||(((((AP1_equals_0>=1)&&(MAP3K1_3_equals_0>=1))&&(MEK1_2_equals_0>=1))&&(PPP2CA_equals_0>=1))&&(RAF_equals_1>=1)))&&(((((AP1_equals_0>=1)&&(MAP3K1_3_equals_1>=1))&&(MEK1_2_equals_0>=1))&&(PPP2CA_equals_0>=1))&&(((PKC_equals_0>=1)&&(RAF_equals_1>=1))&&(RAS_equals_0>=1)))) U EF(((((AKT_0>=1)&&(MAX_equals_1>=1))&&(MSK_equals_1>=1))&&(MYC_equals_0>=1)))) * (EF(((((EGFR_equals_0>=1)&&(FRS2_equals_0>=1))&&(GRB2_equals_1>=1))&&(TGFBR_equals_0>=1))) + (((PKC_equals_0>=1)&&(PLCG_equals_1>=1)) + EF((((ERK_equals_1>=1)&&(SPRY_equals_0>=1))||((EGFR_equals_1>=1)&&(PKC_equals_1>=1)))))))
=> equivalent forward existential formula: ([(FwdU((Init * !((E(!(E(TRUE U ((((AKT_0>=1)&&(MAX_equals_1>=1))&&(MSK_equals_1>=1))&&(MYC_equals_0>=1)))) U (!((((((((Apoptosis_equals_0>=1)&&(BCL2_equals_0>=1))&&(ERK_equals_0>=1))&&(FOXO3_equals_1>=1))&&(p53_equals_1>=1))||(((((AP1_equals_0>=1)&&(MAP3K1_3_equals_0>=1))&&(MEK1_2_equals_0>=1))&&(PPP2CA_equals_0>=1))&&(RAF_equals_1>=1)))&&(((((AP1_equals_0>=1)&&(MAP3K1_3_equals_1>=1))&&(MEK1_2_equals_0>=1))&&(PPP2CA_equals_0>=1))&&(((PKC_equals_0>=1)&&(RAF_equals_1>=1))&&(RAS_equals_0>=1))))) * !(E(TRUE U ((((AKT_0>=1)&&(MAX_equals_1>=1))&&(MSK_equals_1>=1))&&(MYC_equals_0>=1)))))) + EG(!(E(TRUE U ((((AKT_0>=1)&&(MAX_equals_1>=1))&&(MSK_equals_1>=1))&&(MYC_equals_0>=1)))))))),TRUE) * ((((EGFR_equals_0>=1)&&(FRS2_equals_0>=1))&&(GRB2_equals_1>=1))&&(TGFBR_equals_0>=1)))] != FALSE + ([((Init * !((E(!(E(TRUE U ((((AKT_0>=1)&&(MAX_equals_1>=1))&&(MSK_equals_1>=1))&&(MYC_equals_0>=1)))) U (!((((((((Apoptosis_equals_0>=1)&&(BCL2_equals_0>=1))&&(ERK_equals_0>=1))&&(FOXO3_equals_1>=1))&&(p53_equals_1>=1))||(((((AP1_equals_0>=1)&&(MAP3K1_3_equals_0>=1))&&(MEK1_2_equals_0>=1))&&(PPP2CA_equals_0>=1))&&(RAF_equals_1>=1)))&&(((((AP1_equals_0>=1)&&(MAP3K1_3_equals_1>=1))&&(MEK1_2_equals_0>=1))&&(PPP2CA_equals_0>=1))&&(((PKC_equals_0>=1)&&(RAF_equals_1>=1))&&(RAS_equals_0>=1))))) * !(E(TRUE U ((((AKT_0>=1)&&(MAX_equals_1>=1))&&(MSK_equals_1>=1))&&(MYC_equals_0>=1)))))) + EG(!(E(TRUE U ((((AKT_0>=1)&&(MAX_equals_1>=1))&&(MSK_equals_1>=1))&&(MYC_equals_0>=1)))))))) * ((PKC_equals_0>=1)&&(PLCG_equals_1>=1)))] != FALSE + [(FwdU((Init * !((E(!(E(TRUE U ((((AKT_0>=1)&&(MAX_equals_1>=1))&&(MSK_equals_1>=1))&&(MYC_equals_0>=1)))) U (!((((((((Apoptosis_equals_0>=1)&&(BCL2_equals_0>=1))&&(ERK_equals_0>=1))&&(FOXO3_equals_1>=1))&&(p53_equals_1>=1))||(((((AP1_equals_0>=1)&&(MAP3K1_3_equals_0>=1))&&(MEK1_2_equals_0>=1))&&(PPP2CA_equals_0>=1))&&(RAF_equals_1>=1)))&&(((((AP1_equals_0>=1)&&(MAP3K1_3_equals_1>=1))&&(MEK1_2_equals_0>=1))&&(PPP2CA_equals_0>=1))&&(((PKC_equals_0>=1)&&(RAF_equals_1>=1))&&(RAS_equals_0>=1))))) * !(E(TRUE U ((((AKT_0>=1)&&(MAX_equals_1>=1))&&(MSK_equals_1>=1))&&(MYC_equals_0>=1)))))) + EG(!(E(TRUE U ((((AKT_0>=1)&&(MAX_equals_1>=1))&&(MSK_equals_1>=1))&&(MYC_equals_0>=1)))))))),TRUE) * (((ERK_equals_1>=1)&&(SPRY_equals_0>=1))||((EGFR_equals_1>=1)&&(PKC_equals_1>=1))))] != FALSE))
(forward)formula 4,0,0.225653,9436,1,0,166,16287,268,72,3298,18371,247
FORMULA MAPKbis-PT-5320-CTLFireability-04 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EG(E(!(((AP1_equals_1>=1)&&(MEK1_2_equals_1>=1))) U (((((AP1_equals_0>=1)&&(MAP3K1_3_equals_1>=1))&&(MEK1_2_equals_0>=1))&&(PPP2CA_equals_0>=1))||((EGFR_equals_1>=1)&&(PKC_equals_1>=1)))))
=> equivalent forward existential formula: [FwdG(Init,E(!(((AP1_equals_1>=1)&&(MEK1_2_equals_1>=1))) U (((((AP1_equals_0>=1)&&(MAP3K1_3_equals_1>=1))&&(MEK1_2_equals_0>=1))&&(PPP2CA_equals_0>=1))||((EGFR_equals_1>=1)&&(PKC_equals_1>=1)))))] != FALSE
(forward)formula 5,0,0.227571,9436,1,0,166,16309,274,72,3305,18376,249
FORMULA MAPKbis-PT-5320-CTLFireability-05 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (!(EF(((Apoptosis_equals_1>=1)&&(ERK_equals_1>=1)))) + (AX(AX((((DUSP1_equals_0>=1)&&(JNK_equals_0>=1))&&(TAK1_equals_1>=1)))) * E(((PDK1_equals_0>=1)&&(p70_equals_1>=1)) U !(((ERK_equals_1>=1)&&(RSK_equals_0>=1))))))
=> equivalent forward existential formula: ([(EY(EY((Init * !(!(E(TRUE U ((Apoptosis_equals_1>=1)&&(ERK_equals_1>=1)))))))) * !((((DUSP1_equals_0>=1)&&(JNK_equals_0>=1))&&(TAK1_equals_1>=1))))] = FALSE * [((Init * !(!(E(TRUE U ((Apoptosis_equals_1>=1)&&(ERK_equals_1>=1)))))) * !(E(((PDK1_equals_0>=1)&&(p70_equals_1>=1)) U !(((ERK_equals_1>=1)&&(RSK_equals_0>=1))))))] = FALSE)
(forward)formula 6,1,0.230287,9436,1,0,167,16338,281,72,3310,18380,256
FORMULA MAPKbis-PT-5320-CTLFireability-06 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: !((((EX(((GADD45_equals_1>=1)&&(MTK1_equals_0>=1))) * !((((AKT_equals_1>=1)&&(MSK_equals_1>=1))&&(MYC_equals_0>=1)))) * (((AKT_equals_1>=1)&&(p21_equals_1>=1))||((ATF2_equals_0>=1)&&(p38_equals_1>=1)))) + AX(EF(((EGFR_equals_1>=1)&&(PLCG_equals_0>=1))))))
=> equivalent forward existential formula: [(EY((Init * !(((EX(((GADD45_equals_1>=1)&&(MTK1_equals_0>=1))) * !((((AKT_equals_1>=1)&&(MSK_equals_1>=1))&&(MYC_equals_0>=1)))) * (((AKT_equals_1>=1)&&(p21_equals_1>=1))||((ATF2_equals_0>=1)&&(p38_equals_1>=1))))))) * !(E(TRUE U ((EGFR_equals_1>=1)&&(PLCG_equals_0>=1)))))] != FALSE
(forward)formula 7,1,0.242954,9436,1,0,174,17672,286,79,3315,20552,265
FORMULA MAPKbis-PT-5320-CTLFireability-07 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: !(AX(!(EF(((((DUSP1_equals_1>=1)&&(MAP3K1_3_equals_1>=1))&&(TAOK_equals_1>=1))&&(p38_equals_0>=1))))))
=> equivalent forward existential formula: [(FwdU(EY(Init),TRUE) * ((((DUSP1_equals_1>=1)&&(MAP3K1_3_equals_1>=1))&&(TAOK_equals_1>=1))&&(p38_equals_0>=1)))] != FALSE
(forward)formula 8,0,0.246772,9700,1,0,174,17672,287,79,3315,20552,265
FORMULA MAPKbis-PT-5320-CTLFireability-08 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: E(((((((AKT_equals_1>=1)&&(MDM2_equals_0>=1))&&(p14_equals_0>=1))||((JNK_equals_0>=1)&&(JUN_equals_1>=1)))||(!((AP1_equals_1>=1)&&(MEK1_2_equals_1>=1)))) + AX((((((DUSP1_equals_1>=1)&&(JNK_equals_1>=1))&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_0>=1))&&(TAOK_equals_0>=1)))) U AX(((((((DUSP1_equals_1>=1)&&(JNK_equals_1>=1))&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_1>=1))&&(TAK1_equals_0>=1))&&(TAOK_equals_0>=1))))
=> equivalent forward existential formula: [(FwdU(Init,((((((AKT_equals_1>=1)&&(MDM2_equals_0>=1))&&(p14_equals_0>=1))||((JNK_equals_0>=1)&&(JUN_equals_1>=1)))||(!((AP1_equals_1>=1)&&(MEK1_2_equals_1>=1)))) + !(EX(!((((((DUSP1_equals_1>=1)&&(JNK_equals_1>=1))&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_0>=1))&&(TAOK_equals_0>=1))))))) * !(EX(!(((((((DUSP1_equals_1>=1)&&(JNK_equals_1>=1))&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_1>=1))&&(TAK1_equals_0>=1))&&(TAOK_equals_0>=1))))))] != FALSE
(forward)formula 9,1,0.337449,12868,1,0,180,33195,293,85,3472,36385,278
FORMULA MAPKbis-PT-5320-CTLFireability-09 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: ((EX((((((AKT_0>=1)&&(MDM2_equals_0>=1))&&(p14_equals_0>=1))&&(p53_equals_1>=1))||(((DUSP1_equals_0>=1)&&(JNK_equals_0>=1))&&(MAP3K1_3_equals_1>=1)))) + (AG(!(((RAS_equals_0>=1)&&(SOS_equals_1>=1)))) + (((DUSP1_equals_0>=1)&&(TAOK_equals_1>=1))&&(p38_equals_0>=1)))) + ((((((((DUSP1_equals_1>=1)&&(JNK_equals_1>=1))&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_1>=1))&&(TAK1_equals_0>=1))&&(TAOK_equals_0>=1))&&((!((CREB_equals_1>=1)&&(MSK_equals_0>=1)))||((ERK_equals_0>=1)&&(SPRY_equals_1>=1)))) * !(EG(!(((AKT_equals_1>=1)&&(p21_equals_1>=1)))))))
=> equivalent forward existential formula: ([((Init * !((EX((((((AKT_0>=1)&&(MDM2_equals_0>=1))&&(p14_equals_0>=1))&&(p53_equals_1>=1))||(((DUSP1_equals_0>=1)&&(JNK_equals_0>=1))&&(MAP3K1_3_equals_1>=1)))) + (!(E(TRUE U !(!(((RAS_equals_0>=1)&&(SOS_equals_1>=1)))))) + (((DUSP1_equals_0>=1)&&(TAOK_equals_1>=1))&&(p38_equals_0>=1)))))) * !((((((((DUSP1_equals_1>=1)&&(JNK_equals_1>=1))&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_1>=1))&&(TAK1_equals_0>=1))&&(TAOK_equals_0>=1))&&((!((CREB_equals_1>=1)&&(MSK_equals_0>=1)))||((ERK_equals_0>=1)&&(SPRY_equals_1>=1))))))] = FALSE * [FwdG((Init * !((EX((((((AKT_0>=1)&&(MDM2_equals_0>=1))&&(p14_equals_0>=1))&&(p53_equals_1>=1))||(((DUSP1_equals_0>=1)&&(JNK_equals_0>=1))&&(MAP3K1_3_equals_1>=1)))) + (!(E(TRUE U !(!(((RAS_equals_0>=1)&&(SOS_equals_1>=1)))))) + (((DUSP1_equals_0>=1)&&(TAOK_equals_1>=1))&&(p38_equals_0>=1)))))),!(((AKT_equals_1>=1)&&(p21_equals_1>=1))))] = FALSE)
(forward)formula 10,1,0.346757,13132,1,0,187,33737,300,90,3490,37292,287
FORMULA MAPKbis-PT-5320-CTLFireability-10 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (E((((GRB2_equals_1>=1)&&(RSK_equals_0>=1))&&(SOS_equals_0>=1)) U EF((((AKT_0>=1)&&(MAX_equals_0>=1))&&(MYC_equals_1>=1)))) + E(((((ERK_equals_0>=1)&&(MEK1_2_equals_1>=1))||((FGFR3_equals_0>=1)&&(FRS2_equals_1>=1)))||(!((((AP1_equals_0>=1)&&(ATF2_equals_0>=1))&&(FOS_equals_1>=1))&&(JUN_equals_1>=1)))) U ((JNK_equals_0>=1)&&(JUN_equals_1>=1))))
=> equivalent forward existential formula: ([(FwdU(FwdU(Init,(((GRB2_equals_1>=1)&&(RSK_equals_0>=1))&&(SOS_equals_0>=1))),TRUE) * (((AKT_0>=1)&&(MAX_equals_0>=1))&&(MYC_equals_1>=1)))] != FALSE + [(FwdU(Init,((((ERK_equals_0>=1)&&(MEK1_2_equals_1>=1))||((FGFR3_equals_0>=1)&&(FRS2_equals_1>=1)))||(!((((AP1_equals_0>=1)&&(ATF2_equals_0>=1))&&(FOS_equals_1>=1))&&(JUN_equals_1>=1))))) * ((JNK_equals_0>=1)&&(JUN_equals_1>=1)))] != FALSE)
Hit Full ! (commute/partial/dont) 153/30/16
(forward)formula 11,1,0.348682,13132,1,0,189,33754,308,91,3523,37305,291
FORMULA MAPKbis-PT-5320-CTLFireability-11 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (!(A((((((ATM_equals_0>=1)&&(MDM2_equals_0>=1))&&(p38_equals_1>=1))&&(p53_equals_0>=1))&&(((((DUSP1_equals_1>=1)&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_1>=1))&&(TAK1_equals_1>=1))&&(p38_equals_0>=1))) U !((((((Apoptosis_equals_0>=1)&&(BCL2_equals_0>=1))&&(ERK_equals_0>=1))&&(FOXO3_equals_1>=1))&&(p53_equals_1>=1))))) + !((AG(!((((EGFR_equals_0>=1)&&(FGFR3_equals_0>=1))&&(PLCG_equals_1>=1)))) + EG(((((DUSP1_equals_0>=1)&&(JNK_equals_0>=1))&&(TAOK_equals_1>=1))&&((Proliferation_equals_1>=1)&&(p21_equals_1>=1)))))))
=> equivalent forward existential formula: (([(FwdU(Init,!(!((((((Apoptosis_equals_0>=1)&&(BCL2_equals_0>=1))&&(ERK_equals_0>=1))&&(FOXO3_equals_1>=1))&&(p53_equals_1>=1))))) * (!((((((ATM_equals_0>=1)&&(MDM2_equals_0>=1))&&(p38_equals_1>=1))&&(p53_equals_0>=1))&&(((((DUSP1_equals_1>=1)&&(MAP3K1_3_equals_0>=1))&&(MTK1_equals_1>=1))&&(TAK1_equals_1>=1))&&(p38_equals_0>=1)))) * !(!((((((Apoptosis_equals_0>=1)&&(BCL2_equals_0>=1))&&(ERK_equals_0>=1))&&(FOXO3_equals_1>=1))&&(p53_equals_1>=1))))))] != FALSE + [FwdG(Init,!(!((((((Apoptosis_equals_0>=1)&&(BCL2_equals_0>=1))&&(ERK_equals_0>=1))&&(FOXO3_equals_1>=1))&&(p53_equals_1>=1)))))] != FALSE) + [(FwdU((Init * !(EG(((((DUSP1_equals_0>=1)&&(JNK_equals_0>=1))&&(TAOK_equals_1>=1))&&((Proliferation_equals_1>=1)&&(p21_equals_1>=1)))))),TRUE) * (((EGFR_equals_0>=1)&&(FGFR3_equals_0>=1))&&(PLCG_equals_1>=1)))] != FALSE)
Hit Full ! (commute/partial/dont) 138/120/31
(forward)formula 12,0,0.355179,13132,1,0,190,33859,325,93,3596,37338,295
FORMULA MAPKbis-PT-5320-CTLFireability-12 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (AX(EF(((Growth_Arrest_equals_0>=1)&&(p21_equals_1>=1)))) * EG(!(EF(((((DUSP1_equals_1>=1)&&(JNK_equals_0>=1))&&(MAP3K1_3_equals_1>=1))&&(MTK1_equals_1>=1))))))
=> equivalent forward existential formula: ([(EY(Init) * !(E(TRUE U ((Growth_Arrest_equals_0>=1)&&(p21_equals_1>=1)))))] = FALSE * [(Init * !(EG(!(E(TRUE U ((((DUSP1_equals_1>=1)&&(JNK_equals_0>=1))&&(MAP3K1_3_equals_1>=1))&&(MTK1_equals_1>=1)))))))] = FALSE)
(forward)formula 13,1,0.830116,30960,1,0,385,126084,330,196,3634,185494,515
FORMULA MAPKbis-PT-5320-CTLFireability-13 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (((ERK_equals_1>=1)&&(RSK_equals_0>=1)) + EF((((AKT_equals_1>=1)&&(PTEN_equals_1>=1))||((FOXO3_equals_1>=1)&&(JNK_equals_0>=1)))))
=> equivalent forward existential formula: ([(Init * ((ERK_equals_1>=1)&&(RSK_equals_0>=1)))] != FALSE + [(FwdU(Init,TRUE) * (((AKT_equals_1>=1)&&(PTEN_equals_1>=1))||((FOXO3_equals_1>=1)&&(JNK_equals_0>=1))))] != FALSE)
(forward)formula 14,1,0.831523,31224,1,0,387,126123,331,197,3635,185507,516
FORMULA MAPKbis-PT-5320-CTLFireability-14 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (EF((((ELK1_equals_0>=1)&&(ERK_equals_1>=1)) + EG(((MSK_equals_0>=1)&&(p38_equals_1>=1))))) + ((Apoptosis_equals_1>=1)&&(BCL2_equals_1>=1)))
=> equivalent forward existential formula: (([(FwdU(Init,TRUE) * ((ELK1_equals_0>=1)&&(ERK_equals_1>=1)))] != FALSE + [FwdG(FwdU(Init,TRUE),((MSK_equals_0>=1)&&(p38_equals_1>=1)))] != FALSE) + [(Init * ((Apoptosis_equals_1>=1)&&(BCL2_equals_1>=1)))] != FALSE)
Hit Full ! (commute/partial/dont) 143/25/26
(forward)formula 15,0,1.72314,60424,1,0,387,252482,340,198,3754,367288,520
FORMULA MAPKbis-PT-5320-CTLFireability-15 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

ITS tools runner thread asked to quit. Dying gracefully.

BK_STOP 1527926832893

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Jun 02, 2018 8:07:10 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
Jun 02, 2018 8:07:10 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Jun 02, 2018 8:07:10 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 70 ms
Jun 02, 2018 8:07:10 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 106 places.
Jun 02, 2018 8:07:10 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 173 transitions.
Jun 02, 2018 8:07:10 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 23 ms
Jun 02, 2018 8:07:10 AM fr.lip6.move.gal.instantiate.DomainAnalyzer computeVariableDomains
INFO: Found a total of 8 fixed domain variables (out of 106 variables) in GAL type MAPKbis_PT_5320
Jun 02, 2018 8:07:10 AM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: Found a total of 8 constant array cells/variables (out of 106 variables) in type MAPKbis_PT_5320
Jun 02, 2018 8:07:10 AM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: DNA_damage_equals_0,DNA_damage_equals_1,EGFR_stimulus_equals_0,FGFR3_stimulus_equals_1,TGFBR_stimulus_equals_1,FGFR3_stimulus_equals_0,TGFBR_stimulus_equals_0,EGFR_stimulus_equals_1,
Jun 02, 2018 8:07:10 AM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Removed 8 constant variables :DNA_damage_equals_0=0, DNA_damage_equals_1=1, EGFR_stimulus_equals_0=1, FGFR3_stimulus_equals_1=0, TGFBR_stimulus_equals_1=0, FGFR3_stimulus_equals_0=1, TGFBR_stimulus_equals_0=1, EGFR_stimulus_equals_1=0
Jun 02, 2018 8:07:10 AM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Simplified 10 expressions due to constant valuations.
Jun 02, 2018 8:07:10 AM fr.lip6.move.gal.instantiate.Simplifier simplifyFalseTransitions
INFO: Removed 4 false transitions.
Jun 02, 2018 8:07:10 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 68 ms
Jun 02, 2018 8:07:10 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 5 ms
Jun 02, 2018 8:07:10 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 2 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPKbis-PT-5320"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/MAPKbis-PT-5320.tgz
mv MAPKbis-PT-5320 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstools"
echo " Input is MAPKbis-PT-5320, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r284-csrt-152749174900301"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;