Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..................
/home/mcc/execution
total 864K
-rw-r--r-- 1 mcc users 4.2K May 30 21:37 CTLCardinality.txt
-rw-r--r-- 1 mcc users 21K May 30 21:37 CTLCardinality.xml
-rw-r--r-- 1 mcc users 6.5K May 29 15:35 CTLFireability.txt
-rw-r--r-- 1 mcc users 19K May 29 15:35 CTLFireability.xml
-rw-r--r-- 1 mcc users 2.7K May 28 09:51 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 28 09:51 LTLCardinality.xml
-rw-r--r-- 1 mcc users 4.2K May 28 08:05 LTLFireability.txt
-rw-r--r-- 1 mcc users 12K May 28 08:05 LTLFireability.xml
-rw-r--r-- 1 mcc users 1 May 24 11:17 NewModel
-rw-r--r-- 1 mcc users 4.5K May 28 06:33 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 21K May 28 06:33 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 104 May 26 06:29 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 342 May 26 06:29 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 8.3K May 27 04:02 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 20K May 27 04:02 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 28 07:31 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.7K May 28 07:31 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 24 11:17 equiv_col
-rw-r--r-- 1 mcc users 6 May 24 11:17 instance
-rw-r--r-- 1 mcc users 6 May 24 11:17 iscolored
-rw------- 1 mcc users 672K May 24 11:17 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstools
Input is EGFr-PT-10421, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r284-csrt-152749174800274
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME EGFr-PT-10421-CTLFireability-00
FORMULA_NAME EGFr-PT-10421-CTLFireability-01
FORMULA_NAME EGFr-PT-10421-CTLFireability-02
FORMULA_NAME EGFr-PT-10421-CTLFireability-03
FORMULA_NAME EGFr-PT-10421-CTLFireability-04
FORMULA_NAME EGFr-PT-10421-CTLFireability-05
FORMULA_NAME EGFr-PT-10421-CTLFireability-06
FORMULA_NAME EGFr-PT-10421-CTLFireability-07
FORMULA_NAME EGFr-PT-10421-CTLFireability-08
FORMULA_NAME EGFr-PT-10421-CTLFireability-09
FORMULA_NAME EGFr-PT-10421-CTLFireability-10
FORMULA_NAME EGFr-PT-10421-CTLFireability-11
FORMULA_NAME EGFr-PT-10421-CTLFireability-12
FORMULA_NAME EGFr-PT-10421-CTLFireability-13
FORMULA_NAME EGFr-PT-10421-CTLFireability-14
FORMULA_NAME EGFr-PT-10421-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1527925487660

Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,2.70216e+16,1.25867,45472,2,405,5,248526,6,0,766,201279,0


Converting to forward existential form...Done !
original formula: !(FALSE)
=> equivalent forward existential formula: [(Init * !(FALSE))] != FALSE
(forward)formula 0,1,1.25924,45472,1,0,5,248526,7,0,766,201279,0
FORMULA EGFr-PT-10421-CTLFireability-00 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: ((E((((mlk3_equals_1>=1)&&(rac_cdc42_equals_0>=1))&&((akt_equals_0>=1)&&(tsc1_tsc2_equals_0>=1))) U (((ras_equals_1>=1)&&(rasgap_equals_1>=1))||((akt_equals_1>=1)&&(aktd_equals_0>=1)))) * (((((cfos_equals_1>=1)&&(erk12_equals_1>=1))&&(jnk_equals_0>=1))&&(p90rsk_equals_0>=1)) + (AX(((erbb12_equals_0>=1)&&(shp1d_equals_0>=1))) + (((erbb14_equals_1>=1)&&(shc_equals_0>=1))&&(!((ca_equals_0>=1)&&(ip3_equals_1>=1))))))) + !(EG(((sos1_eps8_e3b1_equals_1>=1)||(((erbb12_equals_0>=1)&&(shp1d_equals_0>=1))||((ras_equals_1>=1)&&(rasgap_equals_1>=1)))))))
=> equivalent forward existential formula: [FwdG((Init * !((E((((mlk3_equals_1>=1)&&(rac_cdc42_equals_0>=1))&&((akt_equals_0>=1)&&(tsc1_tsc2_equals_0>=1))) U (((ras_equals_1>=1)&&(rasgap_equals_1>=1))||((akt_equals_1>=1)&&(aktd_equals_0>=1)))) * (((((cfos_equals_1>=1)&&(erk12_equals_1>=1))&&(jnk_equals_0>=1))&&(p90rsk_equals_0>=1)) + (!(EX(!(((erbb12_equals_0>=1)&&(shp1d_equals_0>=1))))) + (((erbb14_equals_1>=1)&&(shc_equals_0>=1))&&(!((ca_equals_0>=1)&&(ip3_equals_1>=1))))))))),((sos1_eps8_e3b1_equals_1>=1)||(((erbb12_equals_0>=1)&&(shp1d_equals_0>=1))||((ras_equals_1>=1)&&(rasgap_equals_1>=1)))))] = FALSE
Reverse transition relation is NOT exact ! Due to transitions erbb11_equals_0_to_erbb11_equals_1_when_erbb1_equals_1_and_hbegf_equals_1_and_shp1d_equals_0, erbb11_equals_1_to_erbb11_equals_0_when_shp1d_equals_1, shp1_equals_0_to_shp1_equals_1_when_erbb11_equals_1, shp1_equals_1_to_shp1_equals_0_when_erbb11_equals_0, shp1d_equals_0_to_shp1d_equals_1_when_shp1_equals_1, shp1d_equals_1_to_shp1d_equals_0_when_shp1_equals_0, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :65/133/6/204
Hit Full ! (commute/partial/dont) 183/0/20
(forward)formula 1,1,5.14406,139344,1,0,296,869906,376,147,4592,612063,359
FORMULA EGFr-PT-10421-CTLFireability-01 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: A(AX(FALSE) U AF(((grb2_equals_0>=1)&&(sos1_equals_1>=1))))
=> equivalent forward existential formula: [((Init * !(EG(!(!(EG(!(((grb2_equals_0>=1)&&(sos1_equals_1>=1))))))))) * !(E(!(!(EG(!(((grb2_equals_0>=1)&&(sos1_equals_1>=1)))))) U (!(!(EX(!(FALSE)))) * !(!(EG(!(((grb2_equals_0>=1)&&(sos1_equals_1>=1))))))))))] != FALSE
(forward)formula 2,0,5.16151,140136,1,0,296,869980,384,149,4754,616273,368
FORMULA EGFr-PT-10421-CTLFireability-02 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EG(!(E(((rac_cdc42_equals_0>=1)&&(sos1_eps8_e3b1_equals_1>=1)) U FALSE)))
=> equivalent forward existential formula: [FwdG(Init,!(E(((rac_cdc42_equals_0>=1)&&(sos1_eps8_e3b1_equals_1>=1)) U FALSE)))] != FALSE
(forward)formula 3,1,6.19359,175896,1,0,296,1.10574e+06,389,149,4865,811031,372
FORMULA EGFr-PT-10421-CTLFireability-03 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (((FALSE + A(((((erbb34_equals_0>=1)&&(gab1_equals_1>=1))&&(pi3k_equals_0>=1))&&(ras_equals_0>=1)) U ((erbb34_equals_1>=1)&&(grb2_equals_0>=1)))) + EF((sos1_eps8_e3b1_equals_1>=1))) * E(EF(((erbb24_equals_1>=1)&&(shc_equals_0>=1))) U (((akt_equals_1>=1)&&(bad_equals_1>=1))&&((erk12_equals_1>=1)&&(nucerk12_equals_0>=1)))))
=> equivalent forward existential formula: [(FwdU((Init * ((FALSE + !((E(!(((erbb34_equals_1>=1)&&(grb2_equals_0>=1))) U (!(((((erbb34_equals_0>=1)&&(gab1_equals_1>=1))&&(pi3k_equals_0>=1))&&(ras_equals_0>=1))) * !(((erbb34_equals_1>=1)&&(grb2_equals_0>=1))))) + EG(!(((erbb34_equals_1>=1)&&(grb2_equals_0>=1))))))) + E(TRUE U (sos1_eps8_e3b1_equals_1>=1)))),E(TRUE U ((erbb24_equals_1>=1)&&(shc_equals_0>=1)))) * (((akt_equals_1>=1)&&(bad_equals_1>=1))&&((erk12_equals_1>=1)&&(nucerk12_equals_0>=1))))] != FALSE
(forward)formula 4,0,6.19432,175896,1,0,296,1.10584e+06,390,149,4866,811032,372
FORMULA EGFr-PT-10421-CTLFireability-04 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EF(A(((jnk_equals_1>=1)&&(p70s6_1_equals_0>=1)) U FALSE))
=> equivalent forward existential formula: [((FwdU(Init,TRUE) * !(EG(!(FALSE)))) * !(E(!(FALSE) U (!(((jnk_equals_1>=1)&&(p70s6_1_equals_0>=1))) * !(FALSE)))))] != FALSE
(forward)formula 5,0,6.19866,176160,1,0,297,1.10648e+06,392,149,4869,811409,375
FORMULA EGFr-PT-10421-CTLFireability-05 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AF(EG(((akt_equals_1>=1)&&(bad_equals_1>=1))))
=> equivalent forward existential formula: [FwdG(Init,!(EG(((akt_equals_1>=1)&&(bad_equals_1>=1)))))] = FALSE
(forward)formula 6,0,6.19955,176424,1,0,297,1.10648e+06,397,149,4869,811409,376
FORMULA EGFr-PT-10421-CTLFireability-06 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AF(!(AX(TRUE)))
=> equivalent forward existential formula: [FwdG(Init,!(!(!(EX(!(TRUE))))))] = FALSE
(forward)formula 7,0,6.1996,176424,1,0,297,1.10648e+06,397,149,4869,811409,376
FORMULA EGFr-PT-10421-CTLFireability-07 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (FALSE * EX(FALSE))
=> equivalent forward existential formula: [(EY((Init * FALSE)) * FALSE)] != FALSE
(forward)formula 8,0,6.19962,176424,1,0,297,1.10648e+06,397,149,4869,811409,376
FORMULA EGFr-PT-10421-CTLFireability-08 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EX(E(!((((akt_equals_0>=1)&&(mtor_ric_equals_1>=1))&&(pi34p2_equals_1>=1))) U FALSE))
=> equivalent forward existential formula: [(FwdU(EY(Init),!((((akt_equals_0>=1)&&(mtor_ric_equals_1>=1))&&(pi34p2_equals_1>=1)))) * FALSE)] != FALSE
(forward)formula 9,0,6.19964,176424,1,0,297,1.10648e+06,397,149,4869,811409,376
FORMULA EGFr-PT-10421-CTLFireability-09 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Jun 02, 2018 7:44:49 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
Jun 02, 2018 7:44:49 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Jun 02, 2018 7:44:49 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 123 ms
Jun 02, 2018 7:44:49 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 208 places.
Jun 02, 2018 7:44:49 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 378 transitions.
Jun 02, 2018 7:44:49 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 36 ms
Jun 02, 2018 7:44:50 AM fr.lip6.move.gal.instantiate.DomainAnalyzer computeVariableDomains
INFO: Found a total of 56 fixed domain variables (out of 208 variables) in GAL type EGFr_PT_10421
Jun 02, 2018 7:44:50 AM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: Found a total of 56 constant array cells/variables (out of 208 variables) in type EGFr_PT_10421
Jun 02, 2018 7:44:50 AM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: pp2b_equals_0,epr_equals_1,nrg4_equals_1,sos1r_equals_0,ar_equals_0,erbb1_equals_1,bir_equals_1,ship2_equals_1,egf_equals_1,pp2b_equals_1,eps8r_equals_1,nrg2b_equals_1,nrg1b_equals_0,erbb2_equals_1,erbb3_equals_1,erbb1_equals_0,mtorr_equals_0,pten_equals_1,csrc_equals_1,ship2_equals_0,pp2a_equals_1,hbegf_equals_0,tgfa_equals_0,nrg1b_equals_1,erbb4_equals_0,erbb3_equals_0,nrg4_equals_0,btc_equals_1,nrg2a_equals_1,eps8r_equals_0,mkp_equals_0,btc_equals_0,sos1r_equals_1,tgfa_equals_1,pi3kr_equals_0,epr_equals_0,pten_equals_0,erbb4_equals_1,ar_equals_1,csrc_equals_0,mtorr_equals_1,hbegf_equals_1,nrg3_equals_1,pdk1_equals_1,erbb2_equals_0,nrg2b_equals_0,nrg3_equals_0,mkp_equals_1,nrg1a_equals_1,nrg1a_equals_0,nrg2a_equals_0,egf_equals_0,bir_equals_0,pp2a_equals_0,pdk1_equals_0,pi3kr_equals_1,
Jun 02, 2018 7:44:50 AM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Removed 56 constant variables :pp2b_equals_0=1, epr_equals_1=1, nrg4_equals_1=1, sos1r_equals_0=1, ar_equals_0=0, erbb1_equals_1=1, bir_equals_1=1, ship2_equals_1=0, egf_equals_1=1, pp2b_equals_1=0, eps8r_equals_1=0, nrg2b_equals_1=1, nrg1b_equals_0=0, erbb2_equals_1=1, erbb3_equals_1=1, erbb1_equals_0=0, mtorr_equals_0=1, pten_equals_1=0, csrc_equals_1=0, ship2_equals_0=1, pp2a_equals_1=0, hbegf_equals_0=0, tgfa_equals_0=0, nrg1b_equals_1=1, erbb4_equals_0=0, erbb3_equals_0=0, nrg4_equals_0=0, btc_equals_1=1, nrg2a_equals_1=1, eps8r_equals_0=1, mkp_equals_0=1, btc_equals_0=0, sos1r_equals_1=0, tgfa_equals_1=1, pi3kr_equals_0=0, epr_equals_0=0, pten_equals_0=1, erbb4_equals_1=1, ar_equals_1=1, csrc_equals_0=1, mtorr_equals_1=0, hbegf_equals_1=1, nrg3_equals_1=1, pdk1_equals_1=1, erbb2_equals_0=0, nrg2b_equals_0=0, nrg3_equals_0=0, mkp_equals_1=0, nrg1a_equals_1=1, nrg1a_equals_0=0, nrg2a_equals_0=0, egf_equals_0=0, bir_equals_0=0, pp2a_equals_0=1, pdk1_equals_0=0, pi3kr_equals_1=1
Jun 02, 2018 7:44:50 AM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Simplified 1018 expressions due to constant valuations.
Jun 02, 2018 7:44:50 AM fr.lip6.move.gal.instantiate.Simplifier simplifyFalseTransitions
INFO: Removed 174 false transitions.
Jun 02, 2018 7:44:50 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 178 ms
Jun 02, 2018 7:44:50 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 2 ms
Jun 02, 2018 7:44:50 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 1 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="EGFr-PT-10421"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/EGFr-PT-10421.tgz
mv EGFr-PT-10421 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstools"
echo " Input is EGFr-PT-10421, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r284-csrt-152749174800274"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;