Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.........................................................
/home/mcc/execution
total 180K
-rw-r--r-- 1 mcc users 3.2K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.9K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 15K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.7K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.4K May 26 09:26 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 26 09:26 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K May 26 09:26 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.0K May 26 09:26 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.7K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 115 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 353 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.4K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 16K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 17 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 21K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstools
Input is GPPP-PT-C0100N0000000100, examination is LTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r248-blw7-152732549700090
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0100N0000000100-LTLFireability-00
FORMULA_NAME GPPP-PT-C0100N0000000100-LTLFireability-01
FORMULA_NAME GPPP-PT-C0100N0000000100-LTLFireability-02
FORMULA_NAME GPPP-PT-C0100N0000000100-LTLFireability-03
FORMULA_NAME GPPP-PT-C0100N0000000100-LTLFireability-04
FORMULA_NAME GPPP-PT-C0100N0000000100-LTLFireability-05
FORMULA_NAME GPPP-PT-C0100N0000000100-LTLFireability-06
FORMULA_NAME GPPP-PT-C0100N0000000100-LTLFireability-07
FORMULA_NAME GPPP-PT-C0100N0000000100-LTLFireability-08
FORMULA_NAME GPPP-PT-C0100N0000000100-LTLFireability-09
FORMULA_NAME GPPP-PT-C0100N0000000100-LTLFireability-10
FORMULA_NAME GPPP-PT-C0100N0000000100-LTLFireability-11
FORMULA_NAME GPPP-PT-C0100N0000000100-LTLFireability-12
FORMULA_NAME GPPP-PT-C0100N0000000100-LTLFireability-13
FORMULA_NAME GPPP-PT-C0100N0000000100-LTLFireability-14
FORMULA_NAME GPPP-PT-C0100N0000000100-LTLFireability-15

=== Now, execution of the tool begins

BK_START 1527972932858

Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock
Read 16 LTL properties
Checking formula 0 : !((G(("((ATP>=1)&&(Gluc>=1))")U("(_3PG>=1)"))))
Formula 0 simplified : !G("((ATP>=1)&&(Gluc>=1))" U "(_3PG>=1)")
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.
// Phase 1: matrix 22 rows 33 cols
invariant :c1 + c2 = 700
invariant :NADplus + _1_3_BPG + _3PG + _2PG + PEP + Pyr = 200
invariant :Pi + _1_3_BPG + _3PG + _2PG + PEP + Pyr + 700'start + Lac = 700
invariant :-302'Ru5P + 751'Xu5P + -210902'R5P + -210151'S7P + -451'E4P + 300'F6P + -300'G6P + -300'_1_3_BPG + 300'ADP + 300'Pyr + 210000'start + 300'Lac + -2'b2 + 1053'a2 + -300'c2 = 210000
invariant :-2'Ru5P + 1051'Xu5P + -210602'R5P + -209851'S7P + 300'GAP + -151'E4P + 600'F6P + 600'FBP + 300'DHAP + -2'b2 + 1053'a2 + -300'c2 = 0
invariant :NADH + -1'_1_3_BPG + -1'_3PG + -1'_2PG + -1'PEP + -1'Pyr = 0
invariant :300'ATP + 302'Ru5P + -751'Xu5P + 210902'R5P + 210151'S7P + 451'E4P + -300'F6P + 300'G6P + 300'_1_3_BPG + -300'Pyr + -300'Lac + 2'b2 + -1053'a2 + 300'c2 = 120000
invariant :4214'Ru5P + -4207'Xu5P + 1688414'R5P + 1684207'S7P + 4207'E4P + 4200'G6P + 2400'_1_3_BPG + 2400'_3PG + 2400'_2PG + 2400'PEP + 2400'Pyr + 1680000'start + 2400'Lac + 4200'Gluc + 14'b2 + -8421'a2 + 2400'c2 = 1680000
invariant :2'GSSG + GSH = 200
invariant :b1 + b2 = 300
invariant :NADPplus + NADPH = 200
invariant :a1 + a2 = 200
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Compilation finished in 470 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 37 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, [](((LTLAP0==true))U((LTLAP1==true))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 34 ms.
FORMULA GPPP-PT-C0100N0000000100-LTLFireability-00 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, [](X(X(<>(<>((LTLAP1==true)))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 18 ms.
FORMULA GPPP-PT-C0100N0000000100-LTLFireability-01 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, (LTLAP2==true), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 14 ms.
FORMULA GPPP-PT-C0100N0000000100-LTLFireability-02 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, <>([](X(X(<>((LTLAP3==true)))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Unexpected exception when executing ltsmin :CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, <>([](X(X(<>((LTLAP3==true)))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
255
sparsehash FATAL ERROR: failed to allocate 31 groups

BK_STOP 1527973602945

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Jun 02, 2018 8:55:34 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
Jun 02, 2018 8:55:34 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Jun 02, 2018 8:55:34 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 51 ms
Jun 02, 2018 8:55:34 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 33 places.
Jun 02, 2018 8:55:34 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 22 transitions.
Jun 02, 2018 8:55:34 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 6 ms
Jun 02, 2018 8:55:34 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 27 ms
Jun 02, 2018 8:55:34 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 2 ms
Jun 02, 2018 8:55:34 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSLTLTools
INFO: Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 1 ms
Jun 02, 2018 8:55:35 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 22 transitions.
Jun 02, 2018 8:55:35 PM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver computeAndDeclareInvariants
INFO: Computed 12 place invariants in 9 ms
Jun 02, 2018 8:55:35 PM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver init
INFO: Proved 33 variables to be positive in 67 ms
Jun 02, 2018 8:55:35 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may disable matrix : 22 transitions.
Jun 02, 2018 8:55:35 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of disable matrix completed :0/22 took 1 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Jun 02, 2018 8:55:35 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete disable matrix. took 1 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Jun 02, 2018 8:55:35 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may enable matrix : 22 transitions.
Jun 02, 2018 8:55:35 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete enable matrix. took 0 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Jun 02, 2018 8:55:35 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeCoEnablingMatrix
INFO: Computing symmetric co enabling matrix : 22 transitions.
Jun 02, 2018 8:55:36 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Finished co-enabling matrix. took 914 ms. Total solver calls (SAT/UNSAT): 163(141/22)
Jun 02, 2018 8:55:36 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeDoNotAccord
INFO: Computing Do-Not-Accords matrix : 22 transitions.
Jun 02, 2018 8:55:38 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Completed DNA matrix. took 1548 ms. Total solver calls (SAT/UNSAT): 44(0/44)
Jun 02, 2018 8:55:38 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 3080ms conformant to PINS in folder :/home/mcc/execution
pins2lts-mc, 0.000: Registering PINS so language module
pins2lts-mc, 0.000: Loading model from ./gal.so
pins2lts-mc, 0.000: library has no initializer
pins2lts-mc, 0.000: loading model GAL
pins2lts-mc, 0.000: completed loading model GAL
pins2lts-mc, 0.000: LTL layer: formula: <>([](X(X(<>((LTLAP3==true))))))
pins2lts-mc, 0.000: "<>([](X(X(<>((LTLAP3==true))))))" is not a file, parsing as formula...
pins2lts-mc, 0.000: Using Spin LTL semantics
pins2lts-mc, 0.009: buchi has 2 states
pins2lts-mc, 0.009: Weak Buchi automaton detected, adding non-accepting as progress label.
pins2lts-mc, 0.010: DFS-FIFO for weak LTL, using special progress label 38
pins2lts-mc, 0.010: There are 39 state labels and 1 edge labels
pins2lts-mc, 0.010: State length is 34, there are 25 groups
pins2lts-mc, 0.010: Running dfsfifo using 1 core (sequential)
pins2lts-mc, 0.010: Using a tree table with 2^27 elements
pins2lts-mc, 0.010: Successor permutation: rr
pins2lts-mc, 0.010: Global bits: 2, count bits: 0, local bits: 0
pins2lts-mc, 0.085: 841 levels 1000 states 4779 transitions
pins2lts-mc, 0.132: 1685 levels 2000 states 9191 transitions
pins2lts-mc, 0.171: 2813 levels 4000 states 14201 transitions
pins2lts-mc, 0.206: 2813 levels 8000 states 20032 transitions
pins2lts-mc, 0.270: 2813 levels 16000 states 31852 transitions
pins2lts-mc, 0.388: 2813 levels 32000 states 55548 transitions
pins2lts-mc, 0.618: 2813 levels 64000 states 117099 transitions
pins2lts-mc, 1.043: 2813 levels 128000 states 244004 transitions
pins2lts-mc, 1.856: 2813 levels 256000 states 523957 transitions
pins2lts-mc, 3.422: 2813 levels 512000 states 1108795 transitions
pins2lts-mc, 6.358: 2813 levels 1024000 states 2311478 transitions
pins2lts-mc, 12.663: 2813 levels 2048000 states 4737470 transitions
pins2lts-mc, 24.528: 2813 levels 4096000 states 9673334 transitions
pins2lts-mc, 49.020: 2813 levels 8192000 states 19609907 transitions
pins2lts-mc, 102.570: 2813 levels 16384000 states 39710479 transitions
pins2lts-mc, 107.703: Error: tree leafs table full! Change -s/--ratio.
pins2lts-mc, 107.705:
pins2lts-mc, 107.705:
pins2lts-mc, 107.705: Explored 16451006 states 39863862 transitions, fanout: 2.423
pins2lts-mc, 107.705: Total exploration time 107.700 sec (107.700 sec minimum, 107.700 sec on average)
pins2lts-mc, 107.705: States per second: 152748, Transitions per second: 370138
pins2lts-mc, 107.705:
pins2lts-mc, 107.705: Progress states detected: 1
pins2lts-mc, 107.705: Redundant explorations: -0.0564
pins2lts-mc, 107.705:
pins2lts-mc, 107.705: Queue width: 8B, total height: 2814, memory: 0.02MB
pins2lts-mc, 107.705: Tree memory: 381.6MB, 24.3 B/state, compr.: 17.6%
pins2lts-mc, 107.705: Tree fill ratio (roots/leafs): 12.0%/99.0%
pins2lts-mc, 107.705: Stored 22 string chucks using 0MB
pins2lts-mc, 107.705: Total memory used for chunk indexing: 0MB
pins2lts-mc, 107.705: Est. total memory use: 381.6MB (~1024.0MB paged-in)
java.lang.RuntimeException: Unexpected exception when executing ltsmin :CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, <>([](X(X(<>((LTLAP3==true)))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
255
at fr.lip6.move.gal.application.LTSminRunner.checkProperty(LTSminRunner.java:167)
at fr.lip6.move.gal.application.LTSminRunner.access$9(LTSminRunner.java:122)
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:91)
at java.lang.Thread.run(Thread.java:748)
ITS-tools command line returned an error code 1

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0100N0000000100"
export BK_EXAMINATION="LTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0100N0000000100.tgz
mv GPPP-PT-C0100N0000000100 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstools"
echo " Input is GPPP-PT-C0100N0000000100, examination is LTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r248-blw7-152732549700090"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;