Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.....................
/home/mcc/execution
total 4.8M
-rw-r--r-- 1 mcc users 4.3K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 21K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.9K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 15K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.8K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.1K May 26 09:26 LTLCardinality.txt
-rw-r--r-- 1 mcc users 14K May 26 09:26 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K May 26 09:26 LTLFireability.txt
-rw-r--r-- 1 mcc users 11K May 26 09:26 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 113 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 351 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.4K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 8 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 4.7M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstools
Input is Diffusion2D-PT-D40N010, examination is LTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r236-blw3-152732477100076
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D40N010-LTLFireability-00
FORMULA_NAME Diffusion2D-PT-D40N010-LTLFireability-01
FORMULA_NAME Diffusion2D-PT-D40N010-LTLFireability-02
FORMULA_NAME Diffusion2D-PT-D40N010-LTLFireability-03
FORMULA_NAME Diffusion2D-PT-D40N010-LTLFireability-04
FORMULA_NAME Diffusion2D-PT-D40N010-LTLFireability-05
FORMULA_NAME Diffusion2D-PT-D40N010-LTLFireability-06
FORMULA_NAME Diffusion2D-PT-D40N010-LTLFireability-07
FORMULA_NAME Diffusion2D-PT-D40N010-LTLFireability-08
FORMULA_NAME Diffusion2D-PT-D40N010-LTLFireability-09
FORMULA_NAME Diffusion2D-PT-D40N010-LTLFireability-10
FORMULA_NAME Diffusion2D-PT-D40N010-LTLFireability-11
FORMULA_NAME Diffusion2D-PT-D40N010-LTLFireability-12
FORMULA_NAME Diffusion2D-PT-D40N010-LTLFireability-13
FORMULA_NAME Diffusion2D-PT-D40N010-LTLFireability-14
FORMULA_NAME Diffusion2D-PT-D40N010-LTLFireability-15

=== Now, execution of the tool begins

BK_START 1527957745064

Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock
Read 16 LTL properties
Checking formula 0 : !((G(G("(cAMP__2_25_>=1)"))))
Formula 0 simplified : !G"(cAMP__2_25_>=1)"
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Reverse transition relation is exact ! Faster fixpoint algorithm enabled.
Compilation finished in 165335 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 141 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, []([]((LTLAP0==true))), --buchi-type=spotba], workingDir=/home/mcc/execution]
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
20085 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,201.632,2377332,1,0,6,1.43379e+07,19,0,61449,1.43023e+06,18
an accepting run exists (use option '-e' to print it)
Formula 0 is FALSE accepting run found.
FORMULA Diffusion2D-PT-D40N010-LTLFireability-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 1 : !((X(G((X("(cAMP__33_29_>=1)"))U(G("(cAMP__17_7_>=1)"))))))
Formula 1 simplified : !XG(X"(cAMP__33_29_>=1)" U G"(cAMP__17_7_>=1)")
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
3531 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,236.94,2378396,1,0,11,1.43379e+07,26,0,66246,4.25241e+06,44
an accepting run exists (use option '-e' to print it)
Formula 1 is FALSE accepting run found.
FORMULA Diffusion2D-PT-D40N010-LTLFireability-01 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Checking formula 2 : !((("(cAMP__10_5_>=1)")U((F("(cAMP__11_38_>=1)"))U(F("(cAMP__5_32_>=1)")))))
Formula 2 simplified : !("(cAMP__10_5_>=1)" U (F"(cAMP__11_38_>=1)" U F"(cAMP__5_32_>=1)"))
WARNING : LTSmin timed out (>225 s) on command CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, []([]((LTLAP0==true))), --buchi-type=spotba], workingDir=/home/mcc/execution]
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, ((LTLAP3==true))U((<>((LTLAP4==true)))U(<>((LTLAP5==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
WARNING : LTSmin timed out (>225 s) on command CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, ((LTLAP3==true))U((<>((LTLAP4==true)))U(<>((LTLAP5==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, X(<>((LTLAP6==true))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 652 ms.
FORMULA Diffusion2D-PT-D40N010-LTLFireability-03 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, X(X(X((LTLAP7==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 984 ms.
FORMULA Diffusion2D-PT-D40N010-LTLFireability-04 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, ((<>((LTLAP8==true)))U([]((LTLAP9==true))))U([](((LTLAP10==true))U((LTLAP11==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
WARNING : LTSmin timed out (>225 s) on command CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, ((<>((LTLAP8==true)))U([]((LTLAP9==true))))U([](((LTLAP10==true))U((LTLAP11==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, X((<>(X((LTLAP12==true))))U(X(<>((LTLAP13==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 655 ms.
FORMULA Diffusion2D-PT-D40N010-LTLFireability-06 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, []((LTLAP14==true)), --buchi-type=spotba], workingDir=/home/mcc/execution]
WARNING : LTSmin timed out (>225 s) on command CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, []((LTLAP14==true)), --buchi-type=spotba], workingDir=/home/mcc/execution]
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, ((LTLAP15==true))U(([]((LTLAP16==true)))U([]((LTLAP17==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
WARNING : LTSmin timed out (>225 s) on command CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, ((LTLAP15==true))U(([]((LTLAP16==true)))U([]((LTLAP17==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, (<>((LTLAP18==true)))U((X((LTLAP19==true)))U(<>((LTLAP20==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 626 ms.
FORMULA Diffusion2D-PT-D40N010-LTLFireability-09 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, <>(X(X([]((LTLAP13==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 623 ms.
FORMULA Diffusion2D-PT-D40N010-LTLFireability-10 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, X([](<>([](X((LTLAP21==true)))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 617 ms.
FORMULA Diffusion2D-PT-D40N010-LTLFireability-11 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, (LTLAP22==true), --buchi-type=spotba], workingDir=/home/mcc/execution]
WARNING : LTSmin timed out (>225 s) on command CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, (LTLAP22==true), --buchi-type=spotba], workingDir=/home/mcc/execution]
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, X(([]([]((LTLAP23==true))))U(<>((LTLAP24==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 626 ms.
FORMULA Diffusion2D-PT-D40N010-LTLFireability-13 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, X(X((X((LTLAP25==true)))U(<>((LTLAP26==true))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 630 ms.
FORMULA Diffusion2D-PT-D40N010-LTLFireability-14 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, --when, --ltl, X(<>(X(<>(<>((LTLAP27==true)))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
LTSmin run took 633 ms.
FORMULA Diffusion2D-PT-D40N010-LTLFireability-15 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Retrying LTSmin with larger timeout 1800 s
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, ((LTLAP3==true))U((<>((LTLAP4==true)))U(<>((LTLAP5==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
WARNING : LTSmin timed out (>1800 s) on command CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, ((LTLAP3==true))U((<>((LTLAP4==true)))U(<>((LTLAP5==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, --ltl, ((<>((LTLAP8==true)))U([]((LTLAP9==true))))U([](((LTLAP10==true))U((LTLAP11==true)))), --buchi-type=spotba], workingDir=/home/mcc/execution]

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Jun 02, 2018 4:42:26 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
Jun 02, 2018 4:42:26 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Jun 02, 2018 4:42:27 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 422 ms
Jun 02, 2018 4:42:27 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 1600 places.
Jun 02, 2018 4:42:27 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 12324 transitions.
Jun 02, 2018 4:42:28 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 1045 ms
Jun 02, 2018 4:42:28 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 95 ms
Jun 02, 2018 4:42:28 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSLTLTools
INFO: Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 4 ms
Jun 02, 2018 4:42:29 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 12324 transitions.
Jun 02, 2018 4:42:29 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (12324) to apply POR reductions. Disabling POR matrices.
Jun 02, 2018 4:42:30 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 1335ms conformant to PINS in folder :/home/mcc/execution

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D40N010"
export BK_EXAMINATION="LTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D40N010.tgz
mv Diffusion2D-PT-D40N010 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstools"
echo " Input is Diffusion2D-PT-D40N010, examination is LTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r236-blw3-152732477100076"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;