Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..........................
/home/mcc/execution
total 208K
-rw-r--r-- 1 mcc users 4.2K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.7K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:49 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:49 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.5K May 26 09:26 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 26 09:26 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K May 26 09:26 LTLFireability.txt
-rw-r--r-- 1 mcc users 7.9K May 26 09:26 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.7K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 23K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 109 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 347 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 13K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:49 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:49 instance
-rw-r--r-- 1 mcc users 6 May 15 18:49 iscolored
-rw-r--r-- 1 mcc users 33K May 15 18:49 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is Angiogenesis-PT-01, examination is LTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r201-qhx1-152732197900002
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-00
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-01
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-02
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-03
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-04
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-05
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-06
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-07
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-08
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-09
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-10
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-11
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-12
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-13
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-14
FORMULA_NAME Angiogenesis-PT-01-LTLFireability-15

=== Now, execution of the tool begins

BK_START 1527414167386

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph8937678954799901380.txt, -o, /tmp/graph8937678954799901380.bin, -w, /tmp/graph8937678954799901380.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph8937678954799901380.bin, -l, -1, -v, -w, /tmp/graph8937678954799901380.weights, -q, 0, -e, 0.001], workingDir=null]
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLFireability.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLFireability.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLFireability.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLFireability.ltl -c -stutter-deadlock
Read 16 LTL properties
Checking formula 0 : !(("((i1.u6.KdStarGStarP3kStarP3>=1)&&(i5.u12.Pip2>=1))"))
Formula 0 simplified : !"((i1.u6.KdStarGStarP3kStarP3>=1)&&(i5.u12.Pip2>=1))"
built 19 ordering constraints for composite.
built 14 ordering constraints for composite.
built 24 ordering constraints for composite.
built 14 ordering constraints for composite.
built 8 ordering constraints for composite.
built 24 ordering constraints for composite.
Reverse transition relation is NOT exact ! Due to transitions k55, i0.u2.k2, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :14/48/2/64
Computing Next relation with stutter on 4 deadlock states
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
5 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.175645,17052,1,0,1152,161,926,1654,188,384,7103
an accepting run exists (use option '-e' to print it)
Formula 0 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 1 : !((F(X(G(F(X("(i3.u10.GStarPgP3>=1)")))))))
Formula 1 simplified : !FXGFX"(i3.u10.GStarPgP3>=1)"
Computing Next relation with stutter on 4 deadlock states
4 unique states visited
4 strongly connected components in search stack
5 transitions explored
4 items max in DFS search stack
1 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.188623,17792,1,0,1214,161,967,1746,189,384,7426
an accepting run exists (use option '-e' to print it)
Formula 1 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-01 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 2 : !((F(F((X("(i3.u10.KdStarGStarPgP3>=1)"))U(X("(i3.u10.KdStarGStarPgP3>=1)"))))))
Formula 2 simplified : !FX"(i3.u10.KdStarGStarPgP3>=1)"
Computing Next relation with stutter on 4 deadlock states
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
1 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.198819,18060,1,0,1535,161,983,2129,190,384,8508
an accepting run exists (use option '-e' to print it)
Formula 2 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-02 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 3 : !((X(X("(i2.u1.DAGE>=1)"))))
Formula 3 simplified : !XX"(i2.u1.DAGE>=1)"
Computing Next relation with stutter on 4 deadlock states
5 unique states visited
5 strongly connected components in search stack
5 transitions explored
5 items max in DFS search stack
1 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.208447,18060,1,0,1583,161,988,2157,190,384,8827
an accepting run exists (use option '-e' to print it)
Formula 3 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-03 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 4 : !((X("((i0.u4.KdStarGStarP3>=1)&&(i3.u10.Pg>=1))")))
Formula 4 simplified : !X"((i0.u4.KdStarGStarP3>=1)&&(i3.u10.Pg>=1))"
Computing Next relation with stutter on 4 deadlock states
4 unique states visited
4 strongly connected components in search stack
4 transitions explored
4 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.211234,18060,1,0,1583,161,996,2157,190,384,8863
an accepting run exists (use option '-e' to print it)
Formula 4 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-04 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 5 : !(("((i5.u0.Pip3>=1)&&(i5.u0.Akt>=1))"))
Formula 5 simplified : !"((i5.u0.Pip3>=1)&&(i5.u0.Akt>=1))"
Computing Next relation with stutter on 4 deadlock states
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.21195,18060,1,0,1583,161,1010,2157,194,384,8870
an accepting run exists (use option '-e' to print it)
Formula 5 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-05 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 6 : !((F(G((G("((i2.u7.KdStarGStarPgStar>=1)&&(i5.u12.Pip2>=1))"))U(X("((i1.u3.GStarP3kP3>=1)&&(i0.u4.KdStar>=1))"))))))
Formula 6 simplified : !FG(G"((i2.u7.KdStarGStarPgStar>=1)&&(i5.u12.Pip2>=1))" U X"((i1.u3.GStarP3kP3>=1)&&(i0.u4.KdStar>=1))")
Computing Next relation with stutter on 4 deadlock states
3 unique states visited
2 strongly connected components in search stack
4 transitions explored
3 items max in DFS search stack
1 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.245735,19796,1,0,2255,164,1062,3144,194,416,11577
an accepting run exists (use option '-e' to print it)
Formula 6 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-06 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 7 : !(("((u5.KdStarGStarP3kStar>=1)&&(i5.u12.Pip2>=1))"))
Formula 7 simplified : !"((u5.KdStarGStarP3kStar>=1)&&(i5.u12.Pip2>=1))"
Computing Next relation with stutter on 4 deadlock states
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.249101,19796,1,0,2255,164,1067,3144,194,416,11583
an accepting run exists (use option '-e' to print it)
Formula 7 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-07 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 8 : !((G((X(G("(u9.KdStarPgStarP2>=1)")))U("(u9.KdStarPgStarP2>=1)"))))
Formula 8 simplified : !G(XG"(u9.KdStarPgStarP2>=1)" U "(u9.KdStarPgStarP2>=1)")
Computing Next relation with stutter on 4 deadlock states
4 unique states visited
4 strongly connected components in search stack
4 transitions explored
4 items max in DFS search stack
1 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.25232,19796,1,0,2255,164,1079,3144,194,416,11599
an accepting run exists (use option '-e' to print it)
Formula 8 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-08 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 9 : !((X(F(X(("(u9.KdStarPg>=1)")U("(i5.u12.PtP2>=1)"))))))
Formula 9 simplified : !XFX("(u9.KdStarPg>=1)" U "(i5.u12.PtP2>=1)")
Computing Next relation with stutter on 4 deadlock states
4 unique states visited
4 strongly connected components in search stack
4 transitions explored
4 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.258044,19796,1,0,2465,164,1099,3413,194,420,12091
an accepting run exists (use option '-e' to print it)
Formula 9 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-09 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 10 : !((F(X(G(X(G("(i1.u6.KdStarGStarP3kStarP3P2>=1)")))))))
Formula 10 simplified : !FXGXG"(i1.u6.KdStarGStarP3kStarP3P2>=1)"
Computing Next relation with stutter on 4 deadlock states
4 unique states visited
3 strongly connected components in search stack
5 transitions explored
4 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.262928,20008,1,0,2465,164,1102,3413,194,420,12137
an accepting run exists (use option '-e' to print it)
Formula 10 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-10 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 11 : !((X((G("((i0.u2.GP3>=1)&&(i0.u4.KdStar>=1))"))U(G("(i2.u7.KdStarGStarPg>=1)")))))
Formula 11 simplified : !X(G"((i0.u2.GP3>=1)&&(i0.u4.KdStar>=1))" U G"(i2.u7.KdStarGStarPg>=1)")
Computing Next relation with stutter on 4 deadlock states
4 unique states visited
4 strongly connected components in search stack
4 transitions explored
4 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.269491,20156,1,0,2465,164,1139,3413,194,420,12216
an accepting run exists (use option '-e' to print it)
Formula 11 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-11 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 12 : !((G("((i2.u7.KdStarGStarPgStar>=1)&&(i5.u12.Pip2>=1))")))
Formula 12 simplified : !G"((i2.u7.KdStarGStarPgStar>=1)&&(i5.u12.Pip2>=1))"
Computing Next relation with stutter on 4 deadlock states
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.274282,20156,1,0,2465,164,1153,3413,194,420,12222
an accepting run exists (use option '-e' to print it)
Formula 12 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-12 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 13 : !(("(i3.u8.KdStarGStarPgStarP3P2>=1)"))
Formula 13 simplified : !"(i3.u8.KdStarGStarPgStarP3P2>=1)"
Computing Next relation with stutter on 4 deadlock states
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.275826,20156,1,0,2465,164,1157,3413,194,420,12230
an accepting run exists (use option '-e' to print it)
Formula 13 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-13 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 14 : !((F((F(G("((u5.KdStarGStarP3kStar>=1)&&(i5.u12.Pip2>=1))")))U(("((u9.KdStarPgStar>=1)&&(i5.u12.Pip2>=1))")U("((i0.u4.KdStarGStarP3>=1)&&(i3.u10.Pg>=1))")))))
Formula 14 simplified : !F(FG"((u5.KdStarGStarP3kStar>=1)&&(i5.u12.Pip2>=1))" U ("((u9.KdStarPgStar>=1)&&(i5.u12.Pip2>=1))" U "((i0.u4.KdStarGStarP3>=1)&&(i3.u10.Pg>=1))"))
Computing Next relation with stutter on 4 deadlock states
2 unique states visited
2 strongly connected components in search stack
2 transitions explored
2 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.283387,20156,1,0,2669,164,1189,3659,194,420,13104
an accepting run exists (use option '-e' to print it)
Formula 14 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-14 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 15 : !((F("(i2.u1.DAGE>=1)")))
Formula 15 simplified : !F"(i2.u1.DAGE>=1)"
Computing Next relation with stutter on 4 deadlock states
2 unique states visited
2 strongly connected components in search stack
2 transitions explored
2 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,0.291847,20156,1,0,2913,164,1220,4000,194,420,13838
an accepting run exists (use option '-e' to print it)
Formula 15 is FALSE accepting run found.
FORMULA Angiogenesis-PT-01-LTLFireability-15 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
WARNING : LTS min runner thread was asked to interrupt. Dying gracefully.

BK_STOP 1527414185382

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 27, 2018 9:43:02 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 27, 2018 9:43:02 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 27, 2018 9:43:02 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 58 ms
May 27, 2018 9:43:02 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 39 places.
May 27, 2018 9:43:02 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 64 transitions.
May 27, 2018 9:43:02 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 29 ms
May 27, 2018 9:43:02 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 27, 2018 9:43:02 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 123 ms
May 27, 2018 9:43:02 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 54 ms
Begin: Sun May 27 09:43:03 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Sun May 27 09:43:03 2018
network size: 39 nodes, 138 links, 128 weight
quality increased from -0.0310669 to 0.420563
end computation: Sun May 27 09:43:03 2018
level 1:
start computation: Sun May 27 09:43:03 2018
network size: 13 nodes, 69 links, 128 weight
quality increased from 0.420563 to 0.494049
end computation: Sun May 27 09:43:03 2018
level 2:
start computation: Sun May 27 09:43:03 2018
network size: 7 nodes, 39 links, 128 weight
quality increased from 0.494049 to 0.494049
end computation: Sun May 27 09:43:03 2018
End: Sun May 27 09:43:03 2018
Total duration: 0 sec
0.494049
May 27, 2018 9:43:03 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 27, 2018 9:43:03 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 31 ms
May 27, 2018 9:43:03 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 27, 2018 9:43:03 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 39 redundant transitions.
May 27, 2018 9:43:03 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/LTLFireability.pnml.gal : 6 ms
May 27, 2018 9:43:03 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSLTLTools
INFO: Time to serialize properties into /home/mcc/execution/LTLFireability.ltl : 2 ms
May 27, 2018 9:43:03 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 64 transitions.
May 27, 2018 9:43:03 AM org.smtlib.impl.Script execute
WARNING: Script execution failed on command (define-fun _enabledsrc__52 ((src (Array Int Int))) Bool (>= (select src 3) 1)) with error
May 27, 2018 9:43:03 AM org.smtlib.impl.Script execute
WARNING: Script execution failed on command (define-fun _enabled__52 ((step Int)) Bool (_enabledsrc__52 (select s step))) with error (error "Error writing to Z3 solver: java.io.IOException: Stream closed")
Skipping mayMatrices nes/nds Error when declaring system variables to SMT solver.(error "Error writing to Z3 solver: java.io.IOException: Stream closed")
java.lang.RuntimeException: Error when declaring system variables to SMT solver.(error "Error writing to Z3 solver: java.io.IOException: Stream closed")
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.init(NextBMCSolver.java:93)
at fr.lip6.move.gal.gal2smt.bmc.KInductionSolver.init(KInductionSolver.java:59)
at fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver.init(NecessaryEnablingsolver.java:71)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.printLabels(Gal2PinsTransformerNext.java:471)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.printDependencyMatrix(Gal2PinsTransformerNext.java:209)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.buildBodyFile(Gal2PinsTransformerNext.java:85)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.transform(Gal2PinsTransformerNext.java:830)
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:71)
at java.lang.Thread.run(Thread.java:748)
May 27, 2018 9:43:03 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 401ms conformant to PINS in folder :/home/mcc/execution

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-01"
export BK_EXAMINATION="LTLFireability"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-01.tgz
mv Angiogenesis-PT-01 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is Angiogenesis-PT-01, examination is LTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r201-qhx1-152732197900002"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;