Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
....................
/home/mcc/execution
total 952K
-rw-r--r-- 1 mcc users 3.3K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.5K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 14K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.9K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.8K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 13K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.9K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 7.6K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 111 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 349 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.3K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 7 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rwxr-xr-x 1 mcc users 786K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is SquareGrid-PT-100510, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r165-smll-152705516300202
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME SquareGrid-PT-100510-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1527495202411

Flatten gal took : 510 ms
Applied a total of 0 rules in 224 ms. Remains 1380 /1380 variables (removed 0) and now considering 1640/1640 (removed 0) transitions.
// Phase 1: matrix 1640 rows 1380 cols
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph6742531945710739084.txt, -o, /tmp/graph6742531945710739084.bin, -w, /tmp/graph6742531945710739084.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph6742531945710739084.bin, -l, -1, -v, -w, /tmp/graph6742531945710739084.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
built 97 ordering constraints for composite.
built 38 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 38 ordering constraints for composite.
built 38 ordering constraints for composite.
built 72 ordering constraints for composite.
built 38 ordering constraints for composite.
built 38 ordering constraints for composite.
built 72 ordering constraints for composite.
built 38 ordering constraints for composite.
built 38 ordering constraints for composite.
built 38 ordering constraints for composite.
built 72 ordering constraints for composite.
built 90 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 38 ordering constraints for composite.
built 72 ordering constraints for composite.
built 38 ordering constraints for composite.
built 72 ordering constraints for composite.
built 56 ordering constraints for composite.
built 38 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 38 ordering constraints for composite.
built 72 ordering constraints for composite.
built 38 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 72 ordering constraints for composite.
built 38 ordering constraints for composite.
Compilation finished in 22040 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 100 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 28, 2018 8:13:25 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 28, 2018 8:13:25 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 28, 2018 8:13:25 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 315 ms
May 28, 2018 8:13:25 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 1380 places.
May 28, 2018 8:13:25 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 1640 transitions.
May 28, 2018 8:13:25 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 77 ms
May 28, 2018 8:13:26 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 506 ms
May 28, 2018 8:13:26 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 13 ms
May 28, 2018 8:13:26 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 1640 transitions.
May 28, 2018 8:13:32 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 28, 2018 8:13:32 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 1640 transitions.
May 28, 2018 8:13:32 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (1640) to apply POR reductions. Disabling POR matrices.
May 28, 2018 8:13:32 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 650 ms
May 28, 2018 8:13:33 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 909ms conformant to PINS in folder :/home/mcc/execution
May 28, 2018 8:13:33 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 773 ms
Begin: Mon May 28 08:13:33 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Mon May 28 08:13:33 2018
network size: 1380 nodes, 6640 links, 3280 weight
quality increased from -0.00104848 to 0.497011
end computation: Mon May 28 08:13:33 2018
level 1:
start computation: Mon May 28 08:13:33 2018
network size: 540 nodes, 2220 links, 3280 weight
quality increased from 0.497011 to 0.880232
end computation: Mon May 28 08:13:33 2018
level 2:
start computation: Mon May 28 08:13:33 2018
network size: 100 nodes, 460 links, 3280 weight
quality increased from 0.880232 to 0.902765
end computation: Mon May 28 08:13:33 2018
level 3:
start computation: Mon May 28 08:13:33 2018
network size: 45 nodes, 233 links, 3280 weight
quality increased from 0.902765 to 0.90769
end computation: Mon May 28 08:13:33 2018
level 4:
start computation: Mon May 28 08:13:33 2018
network size: 32 nodes, 162 links, 3280 weight
quality increased from 0.90769 to 0.90769
end computation: Mon May 28 08:13:33 2018
End: Mon May 28 08:13:33 2018
Total duration: 0 sec
0.90769
May 28, 2018 8:13:34 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 28, 2018 8:13:34 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 170 ms
May 28, 2018 8:13:34 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 28, 2018 8:13:35 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 1600 redundant transitions.
May 28, 2018 8:13:35 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 42 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="SquareGrid-PT-100510"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/SquareGrid-PT-100510.tgz
mv SquareGrid-PT-100510 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is SquareGrid-PT-100510, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r165-smll-152705516300202"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;