Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
....................
/home/mcc/execution
total 6.0M
-rw-r--r-- 1 mcc users 21K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 72K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 117K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 341K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 34K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 23K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 78K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 22K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 83K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 104 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 342 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 55K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 197K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 7.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 21K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 4.9M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is SafeBus-PT-15, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r153-smll-152685551200251
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME SafeBus-PT-15-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1527444876293

Flatten gal took : 1543 ms
Applied a total of 0 rules in 216 ms. Remains 606 /606 variables (removed 0) and now considering 4771/4771 (removed 0) transitions.
Normalized transition count is 1412
// Phase 1: matrix 1412 rows 606 cols
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph638120918968657984.txt, -o, /tmp/graph638120918968657984.bin, -w, /tmp/graph638120918968657984.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph638120918968657984.bin, -l, -1, -v, -w, /tmp/graph638120918968657984.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
built 184 ordering constraints for composite.
built 952 ordering constraints for composite.
built 3978 ordering constraints for composite.
Compilation finished in 84868 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 89 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 27, 2018 6:14:38 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 27, 2018 6:14:38 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 27, 2018 6:14:39 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 506 ms
May 27, 2018 6:14:39 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 621 places.
May 27, 2018 6:14:39 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 4771 transitions.
May 27, 2018 6:14:40 PM fr.lip6.move.gal.instantiate.DomainAnalyzer computeVariableDomains
INFO: Found a total of 15 fixed domain variables (out of 621 variables) in GAL type SafeBus_PT_15
May 27, 2018 6:14:40 PM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: Found a total of 15 constant array cells/variables (out of 621 variables) in type SafeBus_PT_15
May 27, 2018 6:14:40 PM fr.lip6.move.gal.instantiate.Simplifier printConstantVars
INFO: msgl_6,msgl_9,msgl_7,msgl_1,msgl_8,msgl_14,msgl_3,msgl_10,msgl_4,msgl_15,msgl_5,msgl_12,msgl_2,msgl_13,msgl_11,
May 27, 2018 6:14:40 PM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Removed 15 constant variables :msgl_6=1, msgl_9=1, msgl_7=1, msgl_1=1, msgl_8=1, msgl_14=1, msgl_3=1, msgl_10=1, msgl_4=1, msgl_15=1, msgl_5=1, msgl_12=1, msgl_2=1, msgl_13=1, msgl_11=1
May 27, 2018 6:14:40 PM fr.lip6.move.gal.instantiate.Simplifier simplifyConstantVariables
INFO: Simplified 210 expressions due to constant valuations.
May 27, 2018 6:14:41 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 1539 ms
May 27, 2018 6:14:41 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 107 ms
May 27, 2018 6:14:41 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 4771 transitions.
May 27, 2018 6:14:43 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 27, 2018 6:14:44 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 4771 transitions.
May 27, 2018 6:14:44 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (4771) to apply POR reductions. Disabling POR matrices.
May 27, 2018 6:14:44 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 842 ms
May 27, 2018 6:14:44 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 940ms conformant to PINS in folder :/home/mcc/execution
May 27, 2018 6:14:45 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 659 ms
Begin: Sun May 27 18:14:45 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Sun May 27 18:14:45 2018
network size: 606 nodes, 9998 links, 9542 weight
quality increased from -0.0190819 to 0.260935
end computation: Sun May 27 18:14:45 2018
level 1:
start computation: Sun May 27 18:14:45 2018
network size: 23 nodes, 343 links, 9542 weight
quality increased from 0.260935 to 0.313554
end computation: Sun May 27 18:14:45 2018
level 2:
start computation: Sun May 27 18:14:45 2018
network size: 11 nodes, 119 links, 9542 weight
quality increased from 0.313554 to 0.313554
end computation: Sun May 27 18:14:45 2018
End: Sun May 27 18:14:45 2018
Total duration: 0 sec
0.313554
May 27, 2018 6:14:45 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 27, 2018 6:14:46 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 595 ms
May 27, 2018 6:14:46 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 27, 2018 6:14:56 PM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 12684 redundant transitions.
May 27, 2018 6:14:56 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 43 ms
ITS-tools command line returned an error code 134

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="SafeBus-PT-15"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/SafeBus-PT-15.tgz
mv SafeBus-PT-15 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is SafeBus-PT-15, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r153-smll-152685551200251"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;