Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
......................................................................................................................
/home/mcc/execution
total 568K
-rw-r--r-- 1 mcc users 9.5K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 45K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 5.3K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 28K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.4K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.5K May 26 09:27 LTLCardinality.txt
-rw-r--r-- 1 mcc users 20K May 26 09:27 LTLCardinality.xml
-rw-r--r-- 1 mcc users 3.1K May 26 09:27 LTLFireability.txt
-rw-r--r-- 1 mcc users 14K May 26 09:27 LTLFireability.xml
-rw-r--r-- 1 mcc users 9.7K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 42K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 116 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 354 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.6K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 16K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 5.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 16K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 290K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is QuasiCertifProtocol-PT-10, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r141-qhx2-152673582600076
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME QuasiCertifProtocol-PT-10-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1527896822341

Flatten gal took : 323 ms
Constant places removed 27 places and 1 transitions.
Iterating post reduction 0 with 27 rules applied. Total rules applied 27 place count 523 transition count 175
Performed 2 Post agglomeration using F-continuation condition.
Constant places removed 2 places and 0 transitions.
Iterating post reduction 1 with 2 rules applied. Total rules applied 29 place count 521 transition count 173
Applied a total of 29 rules in 143 ms. Remains 521 /550 variables (removed 29) and now considering 173/176 (removed 3) transitions.
// Phase 1: matrix 173 rows 521 cols
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph3450452774064018915.txt, -o, /tmp/graph3450452774064018915.bin, -w, /tmp/graph3450452774064018915.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph3450452774064018915.bin, -l, -1, -v, -w, /tmp/graph3450452774064018915.weights, -q, 0, -e, 0.001], workingDir=null]
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.
// Phase 1: matrix 173 rows 521 cols
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
built 47 ordering constraints for composite.
built 25 ordering constraints for composite.
built 25 ordering constraints for composite.
built 25 ordering constraints for composite.
built 25 ordering constraints for composite.
built 25 ordering constraints for composite.
built 25 ordering constraints for composite.
built 25 ordering constraints for composite.
built 25 ordering constraints for composite.
built 25 ordering constraints for composite.
built 25 ordering constraints for composite.
built 25 ordering constraints for composite.
built 25 ordering constraints for composite.
built 25 ordering constraints for composite.
built 24 ordering constraints for composite.
built 25 ordering constraints for composite.
built 25 ordering constraints for composite.
built 25 ordering constraints for composite.
built 25 ordering constraints for composite.
built 25 ordering constraints for composite.
built 25 ordering constraints for composite.
built 24 ordering constraints for composite.
built 25 ordering constraints for composite.
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Compilation finished in 8048 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 161 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
LTSmin run took 800375 ms.
FORMULA QuasiCertifProtocol-PT-10-ReachabilityDeadlock-0 TRUE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
ITS tools runner thread asked to quit. Dying gracefully.

BK_STOP 1527897984414

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
Jun 01, 2018 11:47:05 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
Jun 01, 2018 11:47:05 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Jun 01, 2018 11:47:06 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 141 ms
Jun 01, 2018 11:47:06 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 550 places.
Jun 01, 2018 11:47:06 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 176 transitions.
Jun 01, 2018 11:47:06 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 60 ms
Jun 01, 2018 11:47:06 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 278 ms
Jun 01, 2018 11:47:06 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 14 ms
Jun 01, 2018 11:47:07 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 176 transitions.
Jun 01, 2018 11:47:08 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
Jun 01, 2018 11:47:08 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 89 ms
Jun 01, 2018 11:47:08 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 112 ms
Jun 01, 2018 11:47:08 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 173 transitions.
Begin: Fri Jun 1 23:47:08 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Fri Jun 1 23:47:08 2018
network size: 521 nodes, 4778 links, 158 weight
quality increased from -0.00489483 to 0.57398
end computation: Fri Jun 1 23:47:08 2018
level 1:
start computation: Fri Jun 1 23:47:08 2018
network size: 77 nodes, 1432 links, 158 weight
quality increased from 0.57398 to 0.774186
end computation: Fri Jun 1 23:47:08 2018
level 2:
start computation: Fri Jun 1 23:47:08 2018
network size: 23 nodes, 484 links, 158 weight
quality increased from 0.774186 to 0.778581
end computation: Fri Jun 1 23:47:08 2018
End: Fri Jun 1 23:47:08 2018
Total duration: 0 sec
0.778581
Jun 01, 2018 11:47:08 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
Jun 01, 2018 11:47:08 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 113 ms
Jun 01, 2018 11:47:09 PM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver computeAndDeclareInvariants
INFO: Computed 0 place invariants in 31 ms
Jun 01, 2018 11:47:09 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
Jun 01, 2018 11:47:09 PM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 131 redundant transitions.
Jun 01, 2018 11:47:09 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 18 ms
Jun 01, 2018 11:47:11 PM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver init
INFO: Proved 521 variables to be positive in 2655 ms
Jun 01, 2018 11:47:11 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may disable matrix : 173 transitions.
Jun 01, 2018 11:47:11 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of disable matrix completed :0/173 took 0 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Jun 01, 2018 11:47:11 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete disable matrix. took 31 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Jun 01, 2018 11:47:11 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may enable matrix : 173 transitions.
Jun 01, 2018 11:47:11 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete enable matrix. took 23 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Jun 01, 2018 11:47:11 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeCoEnablingMatrix
INFO: Computing symmetric co enabling matrix : 173 transitions.
Jun 01, 2018 11:47:14 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(19/173) took 3167 ms. Total solver calls (SAT/UNSAT): 1350(1350/0)
Jun 01, 2018 11:47:18 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(39/173) took 6326 ms. Total solver calls (SAT/UNSAT): 2300(2300/0)
Jun 01, 2018 11:47:21 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(69/173) took 9707 ms. Total solver calls (SAT/UNSAT): 2888(2888/0)
Jun 01, 2018 11:47:24 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of co-enabling matrix(125/173) took 12730 ms. Total solver calls (SAT/UNSAT): 3008(3008/0)
Jun 01, 2018 11:47:26 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Finished co-enabling matrix. took 14694 ms. Total solver calls (SAT/UNSAT): 3010(3010/0)
Jun 01, 2018 11:47:26 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeDoNotAccord
INFO: Computing Do-Not-Accords matrix : 173 transitions.
Jun 01, 2018 11:52:52 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Completed DNA matrix. took 326428 ms. Total solver calls (SAT/UNSAT): 577(0/577)
Jun 01, 2018 11:52:53 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 344690ms conformant to PINS in folder :/home/mcc/execution

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="QuasiCertifProtocol-PT-10"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/QuasiCertifProtocol-PT-10.tgz
mv QuasiCertifProtocol-PT-10 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is QuasiCertifProtocol-PT-10, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r141-qhx2-152673582600076"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;