Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..................
/home/mcc/execution
total 22M
-rw-r--r-- 1 mcc users 16K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 51K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 271K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 795K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.2K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.7K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 16K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 3.2K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 13K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 13K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 37K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 110 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 348 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 494K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 1.3M May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 15K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 30K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 7 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 19M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is PolyORBNT-PT-S10J60, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r129-smll-152673531800391
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME PolyORBNT-PT-S10J60-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1527597739455

Flatten gal took : 3693 ms
Constant places removed 10 places and 0 transitions.
Reduce isomorphic transitions removed 10110 transitions.
Performed 68 Post agglomeration using F-continuation condition.
Iterating post reduction 0 with 10188 rules applied. Total rules applied 10188 place count 1224 transition count 2742
Constant places removed 68 places and 0 transitions.
Iterating post reduction 1 with 68 rules applied. Total rules applied 10256 place count 1156 transition count 2742
Performed 64 Pre agglomeration using Quasi-Persistent + HF-interchangeable + Divergent Free condition.
Pre-agglomeration after 2 with 64 Pre rules applied. Total rules applied 10256 place count 1156 transition count 2678
Constant places removed 64 places and 0 transitions.
Iterating post reduction 2 with 64 rules applied. Total rules applied 10320 place count 1092 transition count 2678
Performed 2 Post agglomeration using F-continuation condition.
Constant places removed 2 places and 0 transitions.
Iterating post reduction 3 with 2 rules applied. Total rules applied 10322 place count 1090 transition count 2676
Applied a total of 10322 rules in 811 ms. Remains 1090 /1234 variables (removed 144) and now considering 2676/12920 (removed 10244) transitions.
Normalized transition count is 2667
// Phase 1: matrix 2667 rows 1090 cols
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph8621926485119219727.txt, -o, /tmp/graph8621926485119219727.bin, -w, /tmp/graph8621926485119219727.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph8621926485119219727.bin, -l, -1, -v, -w, /tmp/graph8621926485119219727.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
built 109 ordering constraints for composite.
built 1004 ordering constraints for composite.
built 1638 ordering constraints for composite.
built 433 ordering constraints for composite.
Compilation finished in 49865 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 77 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 29, 2018 12:42:21 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 29, 2018 12:42:21 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 29, 2018 12:42:22 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 1114 ms
May 29, 2018 12:42:22 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 1234 places.
May 29, 2018 12:42:23 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 12920 transitions.
May 29, 2018 12:42:27 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 3688 ms
May 29, 2018 12:42:27 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 242 ms
May 29, 2018 12:42:30 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 12920 transitions.
May 29, 2018 12:42:33 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 29, 2018 12:42:33 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 2676 transitions.
May 29, 2018 12:42:33 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (2676) to apply POR reductions. Disabling POR matrices.
May 29, 2018 12:42:34 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 473 ms
May 29, 2018 12:42:34 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 639ms conformant to PINS in folder :/home/mcc/execution
May 29, 2018 12:42:34 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 456 ms
Begin: Tue May 29 12:42:34 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Tue May 29 12:42:34 2018
network size: 1090 nodes, 11370 links, 5352 weight
quality increased from -0.0127738 to 0.332308
end computation: Tue May 29 12:42:34 2018
level 1:
start computation: Tue May 29 12:42:34 2018
network size: 76 nodes, 3020 links, 5352 weight
quality increased from 0.332308 to 0.497447
end computation: Tue May 29 12:42:34 2018
level 2:
start computation: Tue May 29 12:42:34 2018
network size: 37 nodes, 247 links, 5352 weight
quality increased from 0.497447 to 0.497447
end computation: Tue May 29 12:42:34 2018
End: Tue May 29 12:42:34 2018
Total duration: 0 sec
0.497447
May 29, 2018 12:42:35 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 29, 2018 12:42:35 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 449 ms
May 29, 2018 12:42:35 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 29, 2018 12:42:39 PM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 6818 redundant transitions.
May 29, 2018 12:42:39 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 65 ms
ITS-tools command line returned an error code 134

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="PolyORBNT-PT-S10J60"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/PolyORBNT-PT-S10J60.tgz
mv PolyORBNT-PT-S10J60 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is PolyORBNT-PT-S10J60, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r129-smll-152673531800391"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;