Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...................
/home/mcc/execution
total 19M
-rw-r--r-- 1 mcc users 21K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 63K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 48K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 140K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.2K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.5K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 15K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 12K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 38K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 110 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 348 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 256K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 668K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 3.0K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 6.4K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 7 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 18M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is PolyORBNT-PT-S10J30, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r129-smll-152673531700377
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME PolyORBNT-PT-S10J30-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1527586280837

Flatten gal took : 3603 ms
Constant places removed 10 places and 0 transitions.
Reduce isomorphic transitions removed 10110 transitions.
Performed 38 Post agglomeration using F-continuation condition.
Iterating post reduction 0 with 10158 rules applied. Total rules applied 10158 place count 654 transition count 1902
Constant places removed 38 places and 0 transitions.
Iterating post reduction 1 with 38 rules applied. Total rules applied 10196 place count 616 transition count 1902
Performed 34 Pre agglomeration using Quasi-Persistent + HF-interchangeable + Divergent Free condition.
Pre-agglomeration after 2 with 34 Pre rules applied. Total rules applied 10196 place count 616 transition count 1868
Constant places removed 34 places and 0 transitions.
Iterating post reduction 2 with 34 rules applied. Total rules applied 10230 place count 582 transition count 1868
Performed 2 Post agglomeration using F-continuation condition.
Constant places removed 2 places and 0 transitions.
Iterating post reduction 3 with 2 rules applied. Total rules applied 10232 place count 580 transition count 1866
Applied a total of 10232 rules in 479 ms. Remains 580 /664 variables (removed 84) and now considering 1866/12050 (removed 10184) transitions.
Normalized transition count is 1857
// Phase 1: matrix 1857 rows 580 cols
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph2011387028979738229.txt, -o, /tmp/graph2011387028979738229.bin, -w, /tmp/graph2011387028979738229.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph2011387028979738229.bin, -l, -1, -v, -w, /tmp/graph2011387028979738229.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
built 36 ordering constraints for composite.
built 1338 ordering constraints for composite.
built 620 ordering constraints for composite.
built 130 ordering constraints for composite.
Compilation finished in 31367 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 59 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
LTSmin run took 750868 ms.
FORMULA PolyORBNT-PT-S10J30-ReachabilityDeadlock-0 TRUE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT

BK_STOP 1527587076935

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 29, 2018 9:31:22 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 29, 2018 9:31:22 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 29, 2018 9:31:24 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 1099 ms
May 29, 2018 9:31:24 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 664 places.
May 29, 2018 9:31:24 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 12050 transitions.
May 29, 2018 9:31:28 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 3597 ms
May 29, 2018 9:31:28 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 243 ms
May 29, 2018 9:31:30 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 12050 transitions.
May 29, 2018 9:31:32 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 29, 2018 9:31:33 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 1866 transitions.
May 29, 2018 9:31:33 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (1866) to apply POR reductions. Disabling POR matrices.
May 29, 2018 9:31:33 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 356 ms
May 29, 2018 9:31:33 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 523ms conformant to PINS in folder :/home/mcc/execution
May 29, 2018 9:31:33 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 350 ms
Begin: Tue May 29 09:31:33 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Tue May 29 09:31:33 2018
network size: 580 nodes, 6030 links, 3732 weight
quality increased from -0.0195946 to 0.299869
end computation: Tue May 29 09:31:33 2018
level 1:
start computation: Tue May 29 09:31:33 2018
network size: 45 nodes, 1483 links, 3732 weight
quality increased from 0.299869 to 0.441277
end computation: Tue May 29 09:31:33 2018
level 2:
start computation: Tue May 29 09:31:33 2018
network size: 13 nodes, 79 links, 3732 weight
quality increased from 0.441277 to 0.441277
end computation: Tue May 29 09:31:33 2018
End: Tue May 29 09:31:33 2018
Total duration: 0 sec
0.441277
May 29, 2018 9:31:33 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 29, 2018 9:31:34 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 405 ms
May 29, 2018 9:31:34 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 29, 2018 9:31:36 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 5828 redundant transitions.
May 29, 2018 9:31:36 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 30 ms
ITS-tools command line returned an error code 134

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="PolyORBNT-PT-S10J30"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/PolyORBNT-PT-S10J30.tgz
mv PolyORBNT-PT-S10J30 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is PolyORBNT-PT-S10J30, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r129-smll-152673531700377"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;