Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...................
/home/mcc/execution
total 19M
-rw-r--r-- 1 mcc users 8.9K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 33K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 43K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 140K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.2K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 5.0K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 24K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 68K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 12K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 40K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 110 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 348 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 233K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 618K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 5.4K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 7 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 18M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is PolyORBNT-PT-S10J20, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r129-smll-152673531700370
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME PolyORBNT-PT-S10J20-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1527581020741

Flatten gal took : 3560 ms
Constant places removed 10 places and 0 transitions.
Reduce isomorphic transitions removed 10110 transitions.
Performed 28 Post agglomeration using F-continuation condition.
Iterating post reduction 0 with 10148 rules applied. Total rules applied 10148 place count 464 transition count 1622
Constant places removed 28 places and 0 transitions.
Iterating post reduction 1 with 28 rules applied. Total rules applied 10176 place count 436 transition count 1622
Performed 24 Pre agglomeration using Quasi-Persistent + HF-interchangeable + Divergent Free condition.
Pre-agglomeration after 2 with 24 Pre rules applied. Total rules applied 10176 place count 436 transition count 1598
Constant places removed 24 places and 0 transitions.
Iterating post reduction 2 with 24 rules applied. Total rules applied 10200 place count 412 transition count 1598
Performed 2 Post agglomeration using F-continuation condition.
Constant places removed 2 places and 0 transitions.
Iterating post reduction 3 with 2 rules applied. Total rules applied 10202 place count 410 transition count 1596
Applied a total of 10202 rules in 336 ms. Remains 410 /474 variables (removed 64) and now considering 1596/11760 (removed 10164) transitions.
Normalized transition count is 1587
// Phase 1: matrix 1587 rows 410 cols
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph4324061513398480091.txt, -o, /tmp/graph4324061513398480091.bin, -w, /tmp/graph4324061513398480091.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph4324061513398480091.bin, -l, -1, -v, -w, /tmp/graph4324061513398480091.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
built 9 ordering constraints for composite.
built 90 ordering constraints for composite.
built 506 ordering constraints for composite.
built 1238 ordering constraints for composite.
Compilation finished in 27960 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 59 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
LTSmin run took 374148 ms.
FORMULA PolyORBNT-PT-S10J20-ReachabilityDeadlock-0 TRUE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
ITS tools runner thread asked to quit. Dying gracefully.

BK_STOP 1527581435733

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 29, 2018 8:03:42 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 29, 2018 8:03:42 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 29, 2018 8:03:43 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 993 ms
May 29, 2018 8:03:43 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 474 places.
May 29, 2018 8:03:44 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 11760 transitions.
May 29, 2018 8:03:48 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 3555 ms
May 29, 2018 8:03:48 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 207 ms
May 29, 2018 8:03:50 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 11760 transitions.
May 29, 2018 8:03:51 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 29, 2018 8:03:51 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 1596 transitions.
May 29, 2018 8:03:51 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (1596) to apply POR reductions. Disabling POR matrices.
May 29, 2018 8:03:51 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 344 ms
May 29, 2018 8:03:52 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 402ms conformant to PINS in folder :/home/mcc/execution
May 29, 2018 8:03:52 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 273 ms
Begin: Tue May 29 08:03:52 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Tue May 29 08:03:52 2018
network size: 410 nodes, 4250 links, 3192 weight
quality increased from -0.0246811 to 0.266178
end computation: Tue May 29 08:03:52 2018
level 1:
start computation: Tue May 29 08:03:52 2018
network size: 35 nodes, 1013 links, 3192 weight
quality increased from 0.266178 to 0.389052
end computation: Tue May 29 08:03:52 2018
level 2:
start computation: Tue May 29 08:03:52 2018
network size: 4 nodes, 16 links, 3192 weight
quality increased from 0.389052 to 0.389052
end computation: Tue May 29 08:03:52 2018
End: Tue May 29 08:03:52 2018
Total duration: 0 sec
0.389052
May 29, 2018 8:03:52 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 29, 2018 8:03:52 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 259 ms
May 29, 2018 8:03:52 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 29, 2018 8:03:54 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 5498 redundant transitions.
May 29, 2018 8:03:54 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 41 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="PolyORBNT-PT-S10J20"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/PolyORBNT-PT-S10J20.tgz
mv PolyORBNT-PT-S10J20 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is PolyORBNT-PT-S10J20, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r129-smll-152673531700370"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;