Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...................
/home/mcc/execution
total 16M
-rw-r--r-- 1 mcc users 6.9K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 25K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 193K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 580K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.9K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 5.6K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 37K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 109K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 7.8K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 26K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 113 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 351 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 164K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 514K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 2.8K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 5.9K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 10 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 15M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is PolyORBLF-PT-S06J06T06, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r129-smll-152673531600251
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME PolyORBLF-PT-S06J06T06-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1527479299575

Flatten gal took : 2905 ms
Constant places removed 6 places and 0 transitions.
Reduce isomorphic transitions removed 8070 transitions.
Performed 78 Post agglomeration using F-continuation condition.
Iterating post reduction 0 with 8154 rules applied. Total rules applied 8154 place count 694 transition count 2592
Constant places removed 78 places and 0 transitions.
Iterating post reduction 1 with 78 rules applied. Total rules applied 8232 place count 616 transition count 2592
Performed 78 Pre agglomeration using Quasi-Persistent + HF-interchangeable + Divergent Free condition.
Pre-agglomeration after 2 with 78 Pre rules applied. Total rules applied 8232 place count 616 transition count 2514
Constant places removed 78 places and 0 transitions.
Iterating post reduction 2 with 78 rules applied. Total rules applied 8310 place count 538 transition count 2514
Symmetric choice reduction at 3 with 12 rule applications. Total rules 8322 place count 538 transition count 2514
Constant places removed 12 places and 12 transitions.
Iterating post reduction 3 with 12 rules applied. Total rules applied 8334 place count 526 transition count 2502
Symmetric choice reduction at 4 with 2 rule applications. Total rules 8336 place count 526 transition count 2502
Constant places removed 2 places and 12 transitions.
Iterating post reduction 4 with 2 rules applied. Total rules applied 8338 place count 524 transition count 2490
Performed 54 Post agglomeration using F-continuation condition.
Constant places removed 54 places and 0 transitions.
Iterating post reduction 5 with 54 rules applied. Total rules applied 8392 place count 470 transition count 2436
Applied a total of 8392 rules in 757 ms. Remains 470 /700 variables (removed 230) and now considering 2436/10740 (removed 8304) transitions.
Normalized transition count is 2400
// Phase 1: matrix 2400 rows 470 cols
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph115098635719872821.txt, -o, /tmp/graph115098635719872821.bin, -w, /tmp/graph115098635719872821.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph115098635719872821.bin, -l, -1, -v, -w, /tmp/graph115098635719872821.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
built 23 ordering constraints for composite.
built 90 ordering constraints for composite.
built 456 ordering constraints for composite.
built 246 ordering constraints for composite.
Compilation finished in 43186 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 67 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
LTSmin run took 47302 ms.
FORMULA PolyORBLF-PT-S06J06T06-ReachabilityDeadlock-0 TRUE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
ITS tools runner thread asked to quit. Dying gracefully.

BK_STOP 1527479402796

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 28, 2018 3:48:21 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 28, 2018 3:48:21 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 28, 2018 3:48:22 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 719 ms
May 28, 2018 3:48:22 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 700 places.
May 28, 2018 3:48:23 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 10740 transitions.
May 28, 2018 3:48:26 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 2901 ms
May 28, 2018 3:48:26 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 227 ms
May 28, 2018 3:48:27 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 10740 transitions.
May 28, 2018 3:48:30 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 28, 2018 3:48:30 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 2436 transitions.
May 28, 2018 3:48:30 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (2436) to apply POR reductions. Disabling POR matrices.
May 28, 2018 3:48:30 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 512 ms
May 28, 2018 3:48:30 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 594ms conformant to PINS in folder :/home/mcc/execution
May 28, 2018 3:48:31 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 388 ms
Begin: Mon May 28 03:48:31 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Mon May 28 03:48:31 2018
network size: 470 nodes, 6798 links, 4872 weight
quality increased from -0.0162027 to 0.476342
end computation: Mon May 28 03:48:31 2018
level 1:
start computation: Mon May 28 03:48:31 2018
network size: 32 nodes, 310 links, 4872 weight
quality increased from 0.476342 to 0.478712
end computation: Mon May 28 03:48:31 2018
level 2:
start computation: Mon May 28 03:48:31 2018
network size: 9 nodes, 49 links, 4872 weight
quality increased from 0.478712 to 0.500879
end computation: Mon May 28 03:48:31 2018
End: Mon May 28 03:48:31 2018
Total duration: 0 sec
0.500879
May 28, 2018 3:48:31 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 28, 2018 3:48:32 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 343 ms
May 28, 2018 3:48:32 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 28, 2018 3:48:33 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 1000 redundant transitions.
May 28, 2018 3:48:33 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 28 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="PolyORBLF-PT-S06J06T06"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/PolyORBLF-PT-S06J06T06.tgz
mv PolyORBLF-PT-S06J06T06 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is PolyORBLF-PT-S06J06T06, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r129-smll-152673531600251"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;